Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------ALFIN1                                                                            ------>MYB46(1)                                                                          --------->AtMYB61                                                                         --------->HSFC1(2)                                                                         <---------At4g35610                                                                         <---------HSFC1(2)                                                                         <---------HSFB2a(1)                                                                         --------->HSFB2a(1)                                                                         --------->At4g35610                                                                      <---------ZAT18                      <---------YAB1                                --------->ANAC46                -                   <---------YAB1               <----------DOF2   --------->HSFB2a(2)              <-           --------->TOE2(3)          <---------ANAC58 >>>>>>>>>>>>>>>>>LFY ------>MYB83       <-----        <---------GLK1(2)             <---------ANAC58<-----------GT1 --------->ZAT18        --------   tgacttctcatattcttaaatatgcttattgacatgggttccttcccattcttttttttccactgtttctagggcaccttccccatccttgtgaatttaa  4446500     --------->ANAC55(2)     <---------ANAC58     <---------ANAC55(1)     <---------ANAC58     <---------ANAC55(2) ---------->GT1                                          <---------At4g35610<---------ICU4 --------TOE2(3)                          --------->TOE1(3)              --------->YAB1 ------GT1                                --------->TOE2(3)             <---------YAB1 ->AHL20(2)                              ----------------->AG         --------->YAB1        <--------   caaggttacatgtctattgacttagacggtttccatttgtcttaccttaaatgtctctgagctcttattctcttataatactttcttccatttcctttct  4446600                                                                --------->ANAC58                                                 <---------ANAC58            <---------MYB52(1)  --------->LBD16  --------->ANAC55(2)           ------>ZmHOX2a(1)    ------>ZmHOX2a(1)<---------ANAC55(2)    <---------DAG2<----------DOF2   --------->ZAT14             --------->ANAC46             --------    --------->TOE2(3)       --------->ARR14(2)   <---------ANAC58                            --------    --------->TOE1(3)--------->YAB1 <---------ZAT14----------->HVH21     ---------->DOF2     <------- --DOF2    <----------DOF2  <---------ARR14(2)<---------MYB52(1)--------->ANAC58        --------->ANAC46   caataaccttatcctttagcctttcatgactatcctggtatactgacccttacttgacacttcttaacgccatactaaagcgaatagaacacgagaatcc  4446700                                                                                                    -                                                                       <---------ICU4             ---                        ----------->GT1                              <---------AHL20(2)          ----         --------->HSFC1(1)                                        <---------AHL20(2)       ---------         --------->HSFB2a(2)                                       ----------->TBP        <----------         <---------HSFB2a(2)                                   --------->CCA1(2)       --------->ARR11(3) <-----------GT1   --------->ANAC58                           <---------ARR11(3)       <---------ARR11(3) ->ARR14(2)        --------->ANAC58                    --------->AHL20(2)   --------->ANAC55(2)  ---- ->GLK1(2)         --------->ANAC46                    <---------AHL20(2)   <---------ANAC55(2)  ---- --ARR14(2)    --------->YAB1              ---------->DOF2    --------->ARR11(3)   ---------->DOF2---   aaattacatttcgagaatcacaagaaatgtaattaagtcttcccaaaaagaaactaattaagtagatatataaaaatcacttaacaaaagatttactcaa  4446800                                                              <----------DOF2                                                          *TSS<---------DAG2                                                         ------>ZmHOX2a(2)    ---------->DOF2                                     --------->GLK1(1)   --------->YAB1                                       <------ZmHOX2a(2)  <---------ATHB12                                     <---------AGP1 --------->ANAC58                                      <---------ARR11(3) --------->ANAC58       --------->TOE2(3)              <-----------ARR10 -------->WOX13(1)   --------->ANAC58                  --------->AGP1   <---------ZAT2 --------->CBF       --------->ANAC58                  --------->ARR11(3) ----->ANAC58   <---------ICU4                         <---------ARR14(2) >ANAC46        --------->YAB1     <---------ANAC58    --------->ARR14(2)                <-----------GT1 -GT1      ------------>CBF  <---------AHL20(2)<---------ANAC58         <---------At4g35610        <- ----->ANAC46  <---------ATHB12    <---------ANAC58   <---------At4g35610      ---------->DOF2    --- ----->ANAC58--------->WOX13(1)    <---------ANAC46   <---------CCA1(2) --------->At4g35610     <---- ---->GAMYB<---------ATHB12 <---------YAB1     <---------ANAC58         --------->ZAT2 --------->YAB1   cgcaatcaaagaaatcaatcatcaagccttattatttgtgtgttaatatgcgtttcagatctcactttatgtgaagctgacaaaagaaattatactcttc  4446900                        ------->TEIL          <---------HSFC1(2)          --------->HSFC1(2)         --------->ANAC58                   --------->TOE1(3)         --------->ANAC58   <---------YAB1  --------->TOE2(3)       --------->ANAC58 -----ZmHOX2a(1)     <---------YAB1       -------->P                --------->ANAC58    <---------YAB1 ------>LBD16  <----------DOF2      --------->WRKY45          --------->MYB46(3)  <---------YAB1 ---- -------RAV1(2)<---------DAG2     <----------DOF2         ------>ZmHOX2a(1)     --------->YAB1 <-----   aggagattgagaagctactttttatgaatttttattctttgactaaccttaaaacatttcctcatccaacaaggaaaaccattgataattctaatagatt  4447000                  ----------->HVH21                --------->CCA1(2)               <---------ARR11(3)                                                     <---------DAG2         --------->At4g35610  --------->At4g35610                                 <---------ATHB12      <---------YAB1        --------->ZAT18          --------->ZAT18       <---------At4g35610 ----->ATHB12  --------->ARR11(3)      ---------->DOF2                     --------->At4g35610 ----WOX13(1)----------->ARR10<---------At4g35610--------->ATHB12<---------YAB1 --------->GLK1(1)   gatttgttatgagatgagatatgacataagtgagcagacagaaaagcacaatgagtggattactatgttgataatggagcagaaatcaatttttgatcag  4447100                                                                                             --------                                                                                          --------->At4g35610                                    <----------DOF2                                  <---------ICU4                        --------->At4g35610                                          --------->ATHB12                      <-----------RAV1(2)                                           --------->ICU4                     <---------ATHB12                       ----------->GT1         <---------YAB1---                   --------->WOX13(1)       <---------TOE2(3)                      --------->TOE2(3)-        <---------MYB46(3)--------->ALFIN1  <---------TOE1(3)             <---------LBD16 <---------At4g35610   ataatgggagtcgttgaaaatcaatcaggtggagttttctttgtttatggtttttgaggcactagtaaaacatttttgtggaaaacattattagctgcta  4447200                                                                  --------->MYB52(1)                                                                 <---------WRKY12                                                                 <---------WRKY38(1)                                                                 <---------ZAT14                                                                 --------->ZAT14                                                                ----------->HVH21         ----------->GT1                                       <-----------HVH21     ---------->DOF2                                     <-----------GT1  <------ZmHOX2a(2)                             <---------ICU4--------->LBD16 ->At4g35610                                   <-------TEIL <---------LBD16 ------>YAB1                             <XXXXXXXXXXXXXXXXXXXXMIR417             --------->YAB1    -- -------->At4g35610                  --------->ALFIN1 <----------DOF2    ----------->RAV1(1)     <---   tcagatcaaaagagaaaattgtgctcaatgctgcatcgagtgggatagattcattacttttacccggtgaacggacaacacattcaaaatttgttattcc  4447300                                                                    <---------HSFC1(2)                                                                    <---------HSFB2a(1)                                  <---------LBD16                   --------->HSFB2a(1)                            <---------ANAC55(2)                     <---------At4g35610                            --------->ANAC55(2)                <---------TOE2(3)                     --------->ANAC55(2)                   <---------TOE2(3)                     <---------ANAC58                    <---------AHL20(2)                         <                     <---------ANAC58                   --------->AHL20(2)     --------->YAB1       -           --------->YAB1 <---------ZAT14              <----------DOF2        <---------YAB1       <- ------->AHL20(2)    <---------ANAC46      <---------------AGL15    --------->HSFC1(2)             -- -------DOF2       <---------ALFIN1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     --------->YAB1     <-----   tttaaatccagaatgatacccctacgtgttcagtaactcggaatactgatattggtgatttaatgaaggaagcttctcttataatatgggatgaggcacc  4447400  Previous    Next  AGI:  At4g07662.1    Description:  transposable element gene. pseudogene, helicase -related, similar to putative helicase; blastp match of 45% identity and 5.1e-88 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)} Range:  from: 4446858    to: 4448546    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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