Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------ALFIN1                                            ----------->HVH21                                          --------->ANAC46                          xxxxxxxxxxxxxxxx>smallRNA(i)                                      ---------                        <---------ICU4  <---------ALFIN1                                   <---------ATHB12   --------->ATHB12  --------->YAB1    -------->P                                    xxxxxxxxxxxxxxxx --ID1            <----------DOF2  --------->ANAC46                           ---------->DOF2    <---   aaccctcattgaaactctctctttcatcatctcgttttcgcaacccctcacattgaagtcttcattccaaacccttcccctaaaacgctccctatcactc  4422300    --------->GLK1(2)    <---------ARR14(2)                                                    <---------ATHB12    --------->ARR14(2)                                           --------->ANAC58   <---------GLK1(2)                                    <-------TEIL    --------->WOX13(1) <---------TOE2(3)                           --------->HSFB2a(1) --------->ANAC58 >ZAT6                                  <---------HSFB2a(2)   ------>ZmHOX2a(1) xxxxxxx>smallRNA(si3)          ---------->DOF2    ---------->DOF2<---------ATHB12 -------DOF2         --------->YAB1     --------->HSFB2a(2)  --------->TOE2(3)   tttaagaatctgttccccttcaacaatacttcaccaaagttactcgaactctccaaagtccatcctcaagcattcaatcagtttcaaactcaaaatttca  4422400                                                                                  <---------AtLEC2                                                         <----------DOF2       --------->YAB1                        <----------DOF2   <-------GAMYB <---------ANAC58      <---------ATHB12            --------->ARR14(2)     <----------DOF2      <---------ANAC58     ------>MYB83            <---------GLK1(2)  ----------------->AGL1<---------WOX13(1)      ------>MYB46(1)   ------       --------->MYB52(1)    <-----------GT1      <---------YAB1           --------->AtMYB61   ------  ---------->DOF2<------------------------ANAC81  <---------AHL20(2)   --------->MYB46(3)      ------   tcaccaaagaaaccgattcccttctcctttgatacctctttgggagttgtttttaattgctttgttgaaactcaccaccaatcttcatggattcaacaag  4422500                                  --------->YAB1                                           <---------ZAT2                                  <---------ICU4                                           --------->ZAT2                            <-------GAMYB                                            xxxxxxxxxxxxxxxx                           <-----------RAV1(1)                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                       ------>ZmHOX2a(2)                                    --------->ANAC46                      <------ZmHOX2a(2)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <---------ARR11(3)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     --------->ARR14(2)                     --------->ATHB12--------->ANAC58                     <---------ARR14(2)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     --------->ARR11(3)               ----------->HVH21     --------->ANAC58     ----          <---------LBD16------>ZmHOX2a(1)          <-------GAMYB    <---------WRKY18(1)  --------->ANAC58 ----------->GT1     <---------ARR14(3)           <---------ANAC58<---------AtLEC2<---------GLK1(2) --->ANAC58          --------->ARR14(3)           <---------ANAC46<---------ANAC58<---------ARR14(2) --->ANAC58          <---------GLK1(2)            <---------ANAC58<---------ANAC58--------->ARR14(2) --->ANAC46        ----------->ARR10            xxxxxxxxxxxxxxxx>smallRNA(s)<----------ID1--------->ANAC58   gaagagtttatctcgggcaagaagatcctctgttgatcatgaagaagttgaggcgtttgacatgagtggcatgactgaacgccaaattcgccaagctcgc  4422600                                                 --------->AtLEC2                                        --------->At4g35610                                         <                                       --------->RAP2.6(2)                                    xxxxxxx                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                           <xxxxxxxx         <------ZmHOX2a(2)          --------->ANAC46                                   ---------->DOF2        --------->ARR11(3)          --------->ANAC58                                <-------GAMYB>>>>        <---------ARR11(3)          --------->ANAC58                               <---------MYB46(3)    ---------->DOF2            --------->At4g35610                                 --------->MYB52(2) >smallRNA(i)                  <---------At4g35610  *TSS                  ---------->DOF2 <---------At4g35610 ----->DEAR3(1)           --------->ALFIN1    <---------ATHB12           <------ZmHOX2a(1)--------->At4g35610   cgtgctcaaagatcaagcttgattcaaggtggaagctcaagccgctcaaccatgcacagagaagaagtagctcgaggaaagagggtcgttgaagctgaag  4422700                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                               <-----------RAV1(1)                                                                           --------->MYB46(3)                                                                          -------->P                                                                          ------>MYB83                            --------->MYB52(1)                            ------>MYB46(1)                           <---------ARR14(2)                           <---------MYB111(2)                   <----------DOF2                                      --------->MYB46(3)                  <---------DAG2                                        <---------MYB55(2)                  --------------->AGL15                                 --------->AtMYB61                  <---------------AGL15                                 --------->DEAR3(1)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                  <---------MYB111(1)     ----- <xxxxxxxxxxxxxxxxsmallRNA(i)                         <------ZmHOX2a(2) <---------MYB46(2)    ------- xxxxxxxxxxxxxxxsmallRNA(si3)                        --------->ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxx>smallRNA(se3)                       <---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(i2) --------->ARR14(2)--------->DAG2         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) >>>>>TBF1       ----------------->AGL3    ---------->DOF2<---------LBD16--------->MYB55(1)  --------   aagaacaccatgaagaggcaccttttgaagaaacggtttctgaagaaaaggttgagatcatcggggatgatacaccaacccctgttgggagaagaaaccg  4422800                            <---------------AtSPL8                     ------->GAMYB                                             --------->YAB1                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <---------------AGL15        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                --------------->AGL15      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    <-----------------AGL3      <------ZmHOX2a(1)--------->LBD16                                      <-----------------AGL1 xxxxsmallRNA(i2)  -------->P                                               <-----------------AG ---->ORA47(1)     ------>MYB46(1)                                        <---------At5g28300 -->DEAR3(2)       ------>MYB83      --------->YAB1                      <-----------GT1       xxxxxx ->MYB52(1)      --------->DEAR3(1) <---------YAB1               --------->ZAT18   --------->DAG2   gccaaggaggaagagagagccaaccccgagcgagtactatcaatatttgaaagagttgaagtttgagggaactagttaccctcataagggaacgatgcaa  4422900                                                                          <---------ANAC46                                                                 ----------------->AGL1       <xxxxxx                                           <---------ARR11(1)   ------>NtERF2                 ------>NtERF2                                           --------->GLK1(2)   >>>>>>>>>AtERF-4              >>>>>>>>                                           <---------ARR14(2)  >>>>>>>>>AtERF-3              >>>>>>>>                                           --------->ARR14(2)--------->At4g35610           <---------At4g35610                          --------->ANAC55(2)           --------->YAB1 --------->ALFIN1    <---------ZAT2                          <---------ANAC55(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)                --------->At4g35610                 <---------bZIP60(2)       <---------ARR11(3)--------->ZAT2            <------ZmHOX2a(1)                 <---------ANAC46          --------->ARR11(3)<---------ZAT2   --------->CCA1(2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-------TEIL <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->ZAT2              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)----------->RAV1(1)<-----------RAV1(1)----------->ARR10 xxxxxxxxxxxxxxxxx>smallRNA(i2)           <---------CCA1(2)  <---------At4g35610 ---------->DOF2   gagcgaggtatttgtggtgatgtggaatacttgatggaattggcaaatcttgcaacattcatgagctgccaatgtgggggatataaagaggagagctgcc  4423000                                                                      <---------MYB59                                                                     <---------ANAC55(2)                                                                     --------->ANAC55(2)                                                                    <-------TEIL                                                                 <---------ANAC58                 ---                                                                 <---------ANAC58                 <--                                                                 <---------ANAC46                 <--                                                           <---------ARR11(3)                     ---                  <-------TEIL                             <---------ARR14(3)                     ---    --------->AtLEC2                                       --------->ARR11(3)  ---------->DOF2    <-- xxxxxxxxxxsmallRNA(i)                                  ----------------------->TaNAC69(2)      xxxxx >AtERF-3 --------->TOE1(3)                ---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(i)         <----- >AtERF-4 --------->TOE2(3)      <---------YAB1         <------ZmHOX2a(1)  <----------DOF2   <-------   aactccttgcaacctcaaggttcatttctgtgttgatgattcagagaaagaagagagaggaggtcttgggtacataactttcaaagttagggatgtcgag  4423100                                                                     --------->YAB1                                                          ------>NtERF2       <---------ARR11(3)                                 --------->LBD16 ------>ARR14(2)                                         --------->ANAC46 -------ARR14(2)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------ZAT14                                         --------->GLK1(2) ------>ZAT14          <-----------GT1      --------->ALFIN1        <---------YAB1 ------>ZAT18     --------->TOE2(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------GLK1(1) -------ZAT18     --------->YAB1<---------ANAC46      <---------ARR14(2)             --------->GLK1(1) xxxxxxxxxxxxxxxxxx>smallRNA(fl3)      ----------------->AGL1<xxxxxxxxxxxxxxxxsmallRNA(s)  <--------- ----ANAC46      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ARR14(2)        <---------At4g35610 --ANAC46   <-----------GT1    <---------LBD16       <---------GLK1(1)          --------->At4g35610   tatactcttgatatttgccatcttaataccattttcgggttcccaagtggagaaggaatccgccaagactatgatcaagaagagctgaaatctctttgga  4423200  Previous    Next  AGI:  At4g07630.1    Description:  transposable element gene. pseudogene, hypothetical protein, contains Pfam profile PF03078: ATHILA ORF-1 family Range:  from: 4422652    to: 4425457    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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