Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------TOE2(3)                          <---------At4g35610        --------->AHL20(2)                            --------->At4g35610 ----->ANAC58                               <----------ID1                   <----------DOF2 ----->ANAC58                              --------->DAG2           --------->ANAC58 --->TOE2(2)            ------->TEIL      ---------->DOF2           --------->ANAC58    <-------TEIL --->TOE1(2)         <---------ATHB12  --------->TOE2(3)        --------->ANAC46  <---------TOE2(3)   aggaaaacaatttaagaaatgcaatgaatttcaaaactataccataaagccaagatagatgactaaacacaaggaaaaccttttaagaaatgcattggag  4397700                                                  --------->ANAC58                                     --------->ICU4                                    <----------DOF2                                 --------->ARR11(3)       <---------ANAC55(2)  <---------ICU4<------MYB46(1)             ---------->DOF2     <---------ARR11(3)     <---------ATHB12    --------->YAB1   <------MYB83          --------->TOE2(3)  ---------->DOF2      --------->ANAC58      <---------AHL20(2) <---------WOX13(1)  <-----------GT1      <------ZmHOX2a(1)   <---------GLK1(1)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   tttaaaactatacattaaagccataggatgacaaaggtctttatgaaatctcaagtcaataagtaagtttctatataaacatcatcaccgtagattggtt  4397800                                                                                      <---------ANAC58                                                                                     <-------TEIL                                                                                    <xxxxxxxxxxxxxxxx                                                                                <---------ALFIN1                                                                            --------->ZAT18                                                                            <-------TEIL           <-                                                                            <---------ZAT18----------                                                                        <---------------AtSPL8     <-           --------->ZAT6                                               --------------->AtSPL8 <-----     <-------TEIL                               --------->YAB1          <---------ICU4<---------ANAC58 <---------TOE2(3)                     --------->ARR14(2)       --------->YAB1 --------->ANAC46------ <---------YAB1                     --------->YAB1         <----------DOF2  --------->ZAT14---------- <---------TOE1(3)            --------->YAB1<---------AtLEC2   <---------YAB1--------->ANAC46  <-----   tttatggttcataacacttgaattgaaatgtattgtaatcaaatttgcattgatactatgactttataatagaataagtacaccacattcgtgtctgtac  4397900 xxxxxxxsmallRNA(se3) ---------DOF2 ----->AtSPL8                             <----------DOF2 --------DAG2                        <---------ZAT14 ----ZAT14                     <----------DOF2 --->ZAT14            --------->ANAC46   <---------DAG2                  --------->HSFB2a(2) ----->AtSPL3      --------->ZAT18   <---------ZAT18    <-------TEIL------->TEIL ----------->GT1   <- ----ZAT18     --------------->AtSPL8--------->ZAT18 <------ZmHOX2a(1)   <---------HSFB2a(2)    <----   actttataggtatacaatatgtacaccaaaatactttagtacacctttttatgtaggatacatatatatgtacttgtagaaaaatgtaattttctaaatt  4398000                                                      ==============================HOX2a_HOX2a                                                     --------->CCA1(2)                                                     <------ZmHOX2a(2)                                                     ===============================HOX2a_HOX2a                                                    --------->AGP1                             --------->TOE2(3)      <---------ARR11(3)                             <---------MYB59        <---------AGP1                             <---------DAG2   --------->ANAC58                           <-----------------AGL1   --------->ARR11(3)                       <-----------GT1        --------->ANAC46                                -------                  <---------AHL20(2)          --------->ANAC58                          =============                 <---------ARR11(3)      ------->GAMYB------>ZmHOX2a(2)                 --------->TGA1a                 --------->AHL20(1)     --------->MYB46(3)         ----------->GT1      --------->O2<                 <---------AHL20(1)     <---------MYB52(2)   --------->AHL20(2)      *TSS<-----------HVH21 ---------->DOF2<---------CCA1(2)     ----------->RAV1(1)<---------TOE2(3)   ------>ZmHOX2a(1)<------ --------YAB1   ----------->TBP <------------CBF    <---------ARR14(2)     <-----------------AGL1   < ---TEIL      ------>ZmHOX2a(1)--------->ATHB12     --------->ARR14(2)--------->AHL20(2)--------->bZIP60(2)   catgaaagagaaactcctatatatttgactaccttattggcaacaaacaagacagatctaagattaaaaagattaaatcctgttatggccatgtcagacc  4398100                                                       --------->At4g35610                                                       <---------At4g35610                                                       ----------->RAV1(2)         <---------RVE1(1)                             <---------ZAT2         <---------CCA1(1)                             --------->ZAT2        --------->ARR11(3)                          <---------At5g28300        <---------ARR11(3)                      <---------ICU4      ----------->ARR10          --------->ALFIN1  <-----------GT1 -->ARR14(2)                   --------->ALFIN1 --------->ATHB51                           --------->ANAC58 ==========bZIP_DOF   <---------ANAC46          <--------HAHB4                   --------->At4g35610 ----------DOF2       <---------ANAC58         <---------YAB1                    <---------At4g35610 ---ARR14(2)<---------------AtSPL8             --------->ICU4       --------->TOE1(2)      --------->ANAC58 ---------WOX13(1)    <---------ANAC58       --------->YAB1    <---------WRKY38(1)     --------->ARR11(3)   tgcttgatgagatatttgtacatatcgtgagaagagtggggaaggcatcataattacagctggggtcaattctacgagggggaagcagaggtctcgcact  4398200                                                                                                 <---                                                                                                 <---                        --------->ANAC58               <---------ZAT2                            ----                 <---------YAB1              <---------ANAC58                               ---------                 --------->ICU4              <---------ANAC58                         <---------ATHB12           --------->MYB52(1)<---------ARR14(2)        <---------At4g35610     <-----------GT1  <----         --------->TOE2(2)   --------->GLK1(2)  --------->WRKY38(1)           ---------->DOF2  ------         --------->TOE2(3)   --------->ARR14(2)<----------CDC5            ----------->GT1   xxxxxxxxx         <---------MYB59--------->ANAC58   <---------ANAC46             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------ANAC55(2) --------->WOX13(1)<-------GAMYB <---------------AGL15--------->ANAC46----   agtatacaatacctaagtgatgatggaagccaatctggatgagttgtgcgttgagcctgctcatatttttggcaaatcgataaaccccatcaatgggtat  4398300                       <----------DOF2                      ------>ZmHOX2a(2)      --------->ZAT2 <------ZmHOX2a(2)      --------->At4g35610     <---------HSFC1(1)      <---------At4g35610     --------->HSFB2a(2)      <---------ZAT2<---------AGP1 ------ARR14(2)     <---------ARR14(2)                     ------->GAMYB ------ARR11(3)     <---------ARR11(3)                    --------->MYB46(3)                  xxxxxxx ----->ARR11(3)     --------->ARR11(3)                  ------>MYB46(1)                       xxxxxxx -->GT1             --------->ARR14(2)         <---------ANAC55(2)               ----------->ARR10 -----CCA1(2)      <---------CCA1(2)           <---------YAB1  --------->GLK1(2) <---------YAB1 ----->ARR10      ----------->ARR10     <-----------GT1 ------>MYB83             <---------TOE2(3) xxxxxxxxxxxxxx>smallRNA(i2)  <---------HSFB2a(2)       --------->MYB52(1)       <---------TOE1(3) ----->ARR14(2)  <--------P   --------->HSFC1(1)     --------->ANAC46 --------->TOE2(3)--------->At4g35610   atcttcgaagctggactgggtagatctttcttcgagaagtgtttacattacgaaaacccaacgacaatctaatctaaatcgctaagattagctacaagag  4398400                <----------DOF2                                                               <------ZmHOX2a(1)          --------->ALFIN1                                                              <---------ANAC58         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          --------->ANAC55(2)      <---------HSFB2a(2)                                                               <---------ANAC58     ------>ZmHOX2a(2)                                               ------->MYC3       <---------ANAC46   --------->ARR11(3)                              <---------ICU4    <-------MYC2       <---------ANAC55(2)   <---------ARR11(3)   <---------AtMYB61         <---------ATHB12   ------->MYC2   <----------DOF2 xxxxxxxxxxxxxxxx>smallRNA(se3)                 --------->WOX13(1)   <-------MYC3  <---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(si3)         ---------->ID1    ----------->RAV1(1)      <---------ANAC58   aacatgatctagatggggctttggcaatggtcgcttctcttggtccctattaatcagtcccaacatttgcatatgcaatgttcttgctttgcgtaaggat  4398500                               --------->SPL7                             --------->TOE2(2)                             --------->TOE1(2)               --------->AHL20(1)                     =                             <---------SPL7                  <---------AHL20(1)                   ---                    <---------ANAC58                         <---------ARR11(3)             ------>ZmHOX2a(1)                    <---------ANAC58                         --------->ARR11(3)             <--------                  <---------YAB1                        ----------->GT1             <-----------GT1 <               ------->TEIL------->TEIL             <---------LBD16        --------->MYB52(1)   -----   gtctgtaattgcaaatgaacatgcttgtgaacgtacgaaggaaatttgagaaattggggagaaaatattccaaaacccaagggattctaccctccttcac  4398600  Previous    Next  AGI:  At4g07583.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 4398085    to: 4398724    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version