Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                         <----------DOF2                                                        <----------DOF2                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                     <---------RAP2.6(2)             xxxxxxxxxxxxxxxx                                         <---------RAP2.6(2)xxxxxxxxxxxxxxxx>smallRNA(i)                                        --------->At4g35610xxxxxxxxxxxxxxxx>smallRNA(i) --------ARR14(2)                       --------->SPL7------>NtERF2      --------->LBD16 ------->ALFIN1           ------>ZmHOX2a(2)      xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxxxxxxx -----GAMYB             --------->ARR14(2)   ---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(i)         ---- ------MYB46(3)         <---------ARR14(2) <------NtERF2<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxx ------DEAR3(2)  ------>ZmHOX2a(2)     --------->ALFIN1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <--- -----DEAR3(1) --------->ARR11(3)   <---------------AtSPL3xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxx -----RAP2.6(2)<---------ARR11(3)--------->ICU4 xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ggtttgggcgaatgctcgatcttggggatcgagtaatgagggtgcggcaaagtttgcgcctttgtgtctatgctccgagtgatcaattggtcgagtagat  4393800                                                        ------>ZmHOX2a(2)                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                      --------->GLK1(2)                                                  ================================HOX2a_HOX2a                         <---------At4g35610      =============HOX2a_HOX2a            <---------ARR14(2)       <---------ANAC46 --------->ARR14(2)            --------->ARR14(2)       <---------ANAC58 <---------ARR14(2)                            <           <---------CCA1(2)         <---------ANAC58=============================HOX2a_HOX2a     xxx           ------>ZmHOX2a(1)        --------->ATHB12 <------ZmHOX2a(1)                            <xx      ------>ZmHOX2a(1)  --------->At4g35610      <------ZmHOX2a(1)                            <-----  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ALFIN1<------ZmHOX2a(2)                       <----- xxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 <xxxxxxxxx xx>smallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------WOX13(1)  <---------ZAT6 ----->HSFC1(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <---------YAB1       <xxxxxxxxxxx xxxxxxxxxxxx>smallRNA(fl3)       <--------P  --------->ICU4      <----------DOF2      <xxxxxxxxxxxxx ------HSFC1(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->LBD16        xxxxxxxxxxxxxxxxxxxx xxxxxxx>smallRNA(si3) <-----------RAV1(2)  xxxxxxxxxxxxxxxx>smallRNA(i)   <------ZmHOX2a(2) <-------   gcttcttcctctcctatctgtatgctcagatgtctggttgagtggggaatgaggaggatccgaagatgctttgatagatcaacaagtcttgtagagttgg  4393900                                              <---------ANAC46                       <xxxxxxxxxxxxxxx    <xxxxxxxxxxxxxxxxsmallRNA(i)              <---------ANAC58            <---------TOE1(3) <xxxxxxxxxxxxxxxxsmallRNA(i)                 <---------ANAC58        <---------At4g35610 xxxxxxxxxxxxxxxxsmallRNA(i)             --------->ALFIN1             --------->At4g35610 xxxxxxxxxxxxxxxxxx>smallRNA(le3)       =====================HOX2a_HOX2axxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxsmallRNA(i)              <------ZmHOX2a(1)             ----------->RAV1(2) -MYB46(1)                       ------>ZmHOX2a(2)               xxxxxxxxxxxxxxxx>smallRNA(i) -MYB83   ----------->GT1        ==============HOX2a_HOX2a   <---------At4g35610  <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxsmallRNA(fl3)   <---------ARR14(2)            --------->At4g35610<---------ANAC46 xxxxxxxxxxxsmallRNA(se3)      --------->ARR14(2)       --------->WOX13(1)<---------TOE2(3) xxxxxxsmallRNA(si3)          <------ZmHOX2a(1)       <------ZmHOX2a(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxx>smallRNA(fl3) <-----------HVH21   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <--------P------>ZmHOX2a(2) -P<---------MYB52(1)         ===============================HOX2a_HOX2a<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   tcacccttggtcgagtaaatcggtcgagtagaggatcgagtaggaggggcgagtagatcaatctgctgtttcatctgaggttgccttgatcgagtaagag  4394000              --------->ATERF1(1)             <---------ATERF1(1)                                                                   --             <---------At4g35610                                                                   --             ------>NtERF2                                                                  ---------          --------->ZAT14                <---------MYB46(3)                              --------->ANAC58          --------->At4g35610<---------ANAC46                           ------>ZmHOX2a(1)--------->ANAC46     --------->ZAT14        ------>NtERF2<XXXXXXXXXXXXXXXXXXXXMIR3440B-5P                --------->ANAC58     <---------ZAT14     --------->At4g35610                 ------>ZmHOX2a(1)         <xxxxxxxxxxxxx     --------->ZAT18     <---------At4g35610 <---------MYB46(3)  <-----------GT1       <xxxxxxxxxxxxx  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ALFIN1     <----------DOF2 <---------ALFIN1      -- xxxxxxsmallRNA(i2)------>ZmHOX2a(1)  <---------ANAC46      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --   ggtcgagtaaactgcagcctcctctatagctgcctagatcgagtggatgggtcgagtagagtcctttttacctccttctacacttgaaaacacaccaaaa  4394100              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          --------->ANAC58      <---------ANAC58      <---------ANAC46      <---------ANAC58 ------>ZmHOX2a(1)      <---------ANAC55(2) ------->AtLEC2     <---------YAB1 ------->ANAC58    --------->ARR11(3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              < >AtMYB61 --------->ANAC58                     ----------->GT1       <---------YAB1               --- xxxxxxxsmallRNA(le3)------>ZmHOX2a(2)         --------->At4g35610 --------->CCA1(2)    ---------->DOF2 xxxsmallRNA(s)    <---------ARR11(3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxx ------->ANAC46    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) - ------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ----------->GT1   ------------>CBF        ----   catgcaatgcgtatgcaagatgatcctagatgcctaagtatgcaaaataagctaaaatggtgcaaaatgatatgatacaatgagcaaatgcaaagctaaa  4394200                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                        --------->ALFIN1                                                                --------->MYB46(2)                                                              <<<<<<<<<MYB1   <---------YAB1                                             <<<<<<<<<MYB2 --------->YAB1                                               <---------MYB52(1) ---------YAB1         *TSS                         ---------->DOF2   <---------ANAC46 ------>YAB1   --------------->AGL15              --------->ANAC58    <---------ZAT2 xxxxxx>smallRNA(i2)  ----------->GT1   --------->YAB1       <-------GAMYB ---------->GT1<---------------AGL15   <---------YAB1    ------------>MYB.PH3(2)           ---------- ----->ICU4--------->ANAC46       <---------ZAT6  --------->ANAC58   --------->ALFIN1  <----------ID1   tgatgataaatacacacctaaaatgagtaaaatacagtgttatcatggagtcaagaaagagtcagttaggcgaggtggacatgtagagaagaacaaagaa  4394300                                                                                    ------->MYC3                                                                                    ------->MYC2                                                                                    <-------MYC2                                                                               --------->ANAC58                   <---------LBD16                                             --------->ANAC58                  --------->MYB52(1)                                         ---------->DOF2               <---------ICU4                                               --------->ZAT2              --------->ICU4                                                <---------ZAT2           --------->AHL20(2) --------->ZAT14                              --------->ANAC58     ----------->GT1<---------ANAC46              --------->ATHB12         --------->ANAC58   <-------GAMYB ----------->HVH21  --------->ARR11(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) >DOF2     <---------AHL20(2) <---------ZAT14    <-------TEIL----------->RAV1(1)    <-------MYC3   <-   gttgctgttgtaaataaatatgacggagacactatagagatgttgaagaaattcattgtggagcaacaaaaaaaacccagcaagcacgttgaagagagag  4394400                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       --------->ZAT14                                       --------->ZAT18                                       <---------ZAT14                                    <---------ANAC46         <------NtERF2                                    <---------MYB46(3)       --------->At4g35610                                   <---------AtMYB61         <---------At4g35610                                   --------->ALFIN1     --------->ANAC58                                  <---------ZAT14       --------->ANAC58                           <X              <---------TOE1(2)  <-----------RAV1(1)  ---------->DOF2                            <---      <---------MYB52(1)     ----------->HVH21  <------ZmHOX2a(2)                <------ZmHOX2a(1)--- --------MYB46(3)    <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ---------->DOF2   atggttcagttattcgagggtttgatcaaatgtgactgtggtggactgcgatctacaaaagccagcacaatggagaagaaacaggaagaagggaaagaca  4394500                    --------->ATHB12           --------->MYB46(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                            --------->TOE1(3)  <---------ZAT14  <---------YAB1                                                       --------->TOE2(3)  --------->ZAT14<------ZmHOX2a(1)                             <------NtERF2     --------->ZAT18 <<<<<<<<<<<<<<<<<LFY     ---------->DOF2               <------ZmHOX2a(1)       xxxxxxxxxxxxxxxx>smallRNA(i) XXXXXXXXXXXXXXXXXXXMIR869.1                       --------->GLK1(2)           --------->bZIP60(1)  - ------ZAT14 ---------->DOF2                 <---------ANAC46 ------>NtERF2    xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------>ZAT6 --------->MYB52(1)       <---------------AGL15  <----------ID1   <---------TOE2(3)     <   acactacaatggaaccaaaggatgatggaaaagacaataccccaatggagtagaatcaggaaggcgacaattctgatgttgaggtcactaccttagagac  4394600             --------->ANAC58             --------->ANAC58         <---------HSFB2a(2)         --------->HSFB2a(2)     --------->O2     --------->ANAC46     ===================================bZIP_DOF     <---------O2                    <---------ZAT14                                               <-     --------->TGA1a             <------ZmHOX2a(1)                                       <---------ANAC58     --------->bZIP60(2)     ---------->DOF2          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   -------     <---------TGA1a       <------ZmHOX2a(1)      --------->ALFIN1                       <---------ANAC58   <---------ALFIN1       <----------ID1       <------ZmHOX2a(1)                    <---------bZIP60(2) -------->ARR14(2)       ------------------------>ANAC81                           <----------------- ---------TCP20 <XXXXXXXXXXXXXXXXXXXXMIR838<------ZmHOX2a(1)                     ----------->HVH21 --   tggttccacgtcgagaggcaagaagaagaggaaaaggactgaagaggaaggagaggggtttgctctctatgagagaaacagatgggacgaggcttacaaa  4394700  Previous    Next  AGI:  At4g07580.1    Description:  transposable element gene. pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain Range:  from: 4394223    to: 4396258    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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