Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->MYB46(3)                                                          <--------               --------->ANAC46                                                  <---------CCA1(2)           ------>ZmHOX2a(1)        --------->ATHB12         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  - ------->MYB46(3)    --------->ATHB12                    <---------ICU4         <xxxxxxxxxxxxxxxxxxxx --->MYB83--------->ANAC46        ------>ZmHOX2a(1)   --------->YAB1      --------->AtMYB61 --------- --->MYB46(1)<---------ALFIN1    --------->TOE2(3) <----------DOF2  --------->ANAC46     ---------->DOF2   aaacaccattctcctccacccattgatttcgcaatccttcattgaaactctctctttcatcatctcattttcgcaacctctccatctctcacaaagcttc  4388900                                                                                                 <---                                                                                                -----      --------->ANAC46                                                     <------ZmHOX2a(2)    ----- -HSFC1(2)                   --------->ZAT14                   ---------->DOF2               ------>ZmHOX2a(1) -------->HSFC1(2)           <---------ZAT14        --------->YAB1         =========================HOX2a_HOX2a xxxsmallRNA(i2)       --------->ZAT6              <---------YAB1   <-----------GT1  <---------ZAT2<x >HSFC1(2)            <---------ATHB12            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      ---------   gaagtttcactccaaactctccctatcactcttcactaattcgttctcacttcatcatacttcaccaaagttactcgatcacttccaagctcatcctcaa  4389000                                                       <----------DOF2                  <---------DAG2 ------ATHB12                              <---------GLK1(2)<---------GLK1(1)           <----------DOF2 ---->ANAC58                               --------->ARR14(2)                        <---------AHL20(2) ---->ANAC58                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <-----------GT1 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->MYB52(1)    <-----------GT1      --------->AHL20(2) >TOE2(3)                      <---------ANAC55(2) <---------ALFIN1              <---------AHL20(2)   gcattcaatcggtttcaagctcaaaatttcatcacctaagaaaccgattccctccccctttgataccccttggagagttgtttttaattacttttttgaa  4389100                                                                                        --------->ZAT18                                                                                     <---------ANAC58                                                                          <---------ANAC58                                                                          <---------ANAC46          -                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                            ------>ZmHOX2a(1) ----------->HVH21     -                                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------ANAC58                                    --------->ANAC58      ------>ZmHOX2a(2) <-------GAMYB           -   <---------ALFIN1                 --------->ANAC58    --------->ARR11(3)<---------ANAC58  ---------  --------->MYB46(3)             --------->HSFB2a(2)<-------GAMYB       xxxxxxxxxxxxxxxx>smallRNA(s)<   actcaccaccatgtattcaagaaggaagagttcgtctcgagcaagaagatgctctgttgatcctgaagaagttgaggcgtttgacatgagtgccatgact  4389200                                                                        --------->AtLEC2                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                        --------->ANAC58               <---------ZAT2                                     <---------ETT(2)               --------->ZAT2                                  --------->At4g35610      <---------GLK1(2)                                    --------->ANAC46      --------->ARR14(2)                                   --------->ANAC58                       xxx      <---------ARR14(2)        ==========================HOX2a_HOX2a   --------->ANAC58      -------    <xxxxxxxxxxxxxxxxsmallRNA(i)<------ZmHOX2a(2)          --------->ANAC58*TSS    <xxxxxxxxxxxxxxxxsmallRNA(se3) -------->ANAC46           ---------->DOF2               <xxxxxxxxxxxxxxxxsmallRNA(i)        <------- -------->ANAC58     <---------ANAC58                 --------->At4g35610  ---------->DOF2  <-------- -------->ANAC58     <---------ANAC58                 <---------At4g35610 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -->HVH21     --------->ANAC58 --------->ARR11(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->ZAT2 ----------ID1--------->ANAC58 <---------ARR11(3)  <------ZmHOX2a(1)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   gaacgccaaattcgccaagctcgtcgtgccaaagatcaagcttgattcaaggaggaagctcaagccgctcgaccatgcaaagagaagaagtagctcgggg  4389300                                                                                                 ----                                                                                             <xxxxxxx                                                                                            ---------             <---------At4g35610                                                            ---------      <---------MYB46(3)     <xxxxxxxxxxxxxxxxsmallRNA(i)                        <---------LBD16 ----      --------->MYB52(2)--------->ZAT18           --------->DAG2             <------ZmHOX2a(2)   ---- xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <----------DOF2                  --------->ARR11(3)  <---- -->LBD16    --------->At4g35610      <---------ALFIN1                      <---------ARR11(3) <----- --LBD16  ---------->DOF2 ----------->RAV1(1)    ---------->DOF2      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -LBD16<-------GAMYB    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   gaagagggtcgttgaagctgaagaagagcaccatgaagaagcaccctttgaaaaagtggtttctgaagaagaggttgagatcatcggggatgatacccca  4389400                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                  <-- <-----------RAV1(1)                         --------->LBD16                                      --- -->MYB83          ------>MYB46(1)         ------->GAMYB   ========================================== xxxxxxxxxxxxxsmallRNA(i2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               --- >ANAC58           ------>MYB83          ------>MYB83      ========================================== >ANAC58          --------->ORA47(1)     -------->P        <---------------AGL15                  <-- ---->P          --------->DEAR3(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <----- -->MYB46(1)    --------->MYB46(3)       ------>MYB46(1)   --------------->AGL15              <------ -----ALFIN1    --------->DEAR3(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 ------- ----ALFIN1   --------->MYB52(1)       --------->DEAR3(1) ----------------->AGL1       --------->ZAT18   accctgttgggagaagaaaccgaccaagaaggaagagagagccaaccccgagcgagtactaccaatatttgaaagagttgaagtttgagggaactagata  4389500          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <------ZmHOX2a(1)      ----------->GT1 --------->YAB1 ------------->AGL15 --------------AGL15                                                                   -------------- ---------------AG                                                            --------->ATHB12 ---------------AGL3                                                          --------->YAB1 -------------->AG                                                           <-------TEIL    -------- ===============MADS_MADS                                               ----------->RAV1(1)<--------- -------------->AGL1                                              <---------ATHB12    ------>NtERF2 - ==============MADS_MADS           <-----------HVH21             <---------ARR14(2)<---------At4g35610 ---------------AGL1     <------MYB83                            --------->ARR14(2)--------->ZAT2  -- ----GLK1(1)             <------MYB46(1) --------->ALFIN1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  <- ---ARR14(2)        <---------ARR11(3) <---------ANAC46    xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---- -->ARR14(2)        --------->ARR11(3) <---------O2  <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->At4g35610   ccctcataaggaaacaatgcaagagcttggtatttgtggtcatgtggagtacttgatggaattggccaatcttgcaacattcattagctgccaatgtggg  4389600                <xxxxxxxxxxxxxxxxsmallRNA(i)                ------>NtERF2               >>>>>>>>>AtERF-4               >>>>>>>>>AtERF-3             --------->At4g35610             <---------ZAT2   ---------->DOF2 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                          <------- --->AGL1    <---------At4g35610                                                            --------- ->ALFIN1<------ZmHOX2a(1)                                                                  <-------- --RAV1(1)----------->ARR10              <-------TEIL             ---------->DOF2 <---------ARR14(3) -------->CCA1(2)               ------->GAMYB             --------->ARR11(1)      --------->ARR11(3) ------->ARR14(2)         --------->AtLEC2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(i) --------ARR14(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------YAB1            <---------ARR11(3) -----ANAC46 --------->ZAT2  <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ATHB12      <------ZmHOX2a(1)  <--   ggatacaaagaggagagctgccaactccttgcaaccctcaaggttcatttttgtgttgatgattcggagaaagaagagagaggaggtcttggttacataa  4389700                     <---------ZAT18                     --------->ZAT18                     --------->ARR14(2)                                                     ---------                     <---------ARR14(2)                         <---------STY1(1)          <---------YAB1                  <---------ANAC46               <---------------AGL15              <xxxxxxxxxxxxxxxxsmallRNA(s)                <---------ANAC46                 --------------->AGL15           --------->LBD16               <------NtERF2                    ----------------->AGL3        xxxxxxxxxxxxxxxxxxxxxxx   <---------TOE1(3) --------->ZAT14            <-----------------AGL2       <---------ARR14(2)   <---------TOE2(3) <---------ZAT14            <-----------------AGL3       --------->ARR14(2) --MYB59 <---------ANAC46                     <-----------GT1   --------->STY1(1)------>NtERF2 >ANAC55(2)<---------ANAC58                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ANAC46 -ANAC55(2)<---------ANAC58              --------->YAB1  <---------ANAC58    --------->GLK1(2) --------DOF2--------->ALFIN1           --------->ICU4   <---------ANAC58   <---------GLK1(1)   ctttcaaggttatgggtgtcgagtatactcttaacatatgcaatattgataccatttttgggttccctagtggagaaggaatccgccaagactatgatca  4389800  Previous    Next  AGI:  At4g07570.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 4389275    to: 4390722    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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