Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                                                                             ------>NtERF2                                                                                             --------                                                                                            ---------                                                                                            ---------                                                                                           <------NtERF2                                                                                           --------->ATERF1(1)                                                                                           --------->RAP2.3(1)                                                                                          <---------At4g35610                                                                                          <---------ATERF1(1)                                                                                          --------->At4g35610                                                                                          ------>NtERF2                                                                                          --------->ABI4(1)                                                                                         --------->RAP2.3(3)                                                                                         --------->DEAR3(1)                                                                                         --------->RAP2.3(2)                                                                                         <---------DEAR3(1)                         <------NtERF2                                                  --------->ATERF1(1)                        ------>NtERF2                                                   --------->RRTF1(1)                       --------->ATERF1(2)                                              --------->DEAR4(2)                       <---------ATERF1(2)                                              --------->ORA47(2)                       <---------RAP2.6(2)                                              --------->ERF1                       --------->ANAC46                                                 --------->RAP2.3(1)                      --------->RAP2.6(3)                                           ---------->DOF2                     <---------WRKY18(1)                                            <---------DOF5.7(2)                    --------->WRKY12                                               ----------->HVH21                    ----------->HVH21                                              --------->ARR14(2)                   <--------P                                                      <---------ARR14(2)                   <---------WOX13(1)                                             --------->At5g28300             <---------ARR14(2)                                                   <------NtERF2            <------NtERF2<---------At4g35610                                     <---------DEAR3(2)           <---------RAP2.3(1)                                                   <---------MYB46(3)           <---------DEAR3(2)                                                   <---------ANAC46          <---------RAP2.6(2)                                                  <------NtERF2---------          <---------DREB2C(2)                                <---------ANAC58  ------>NtERF2---------          <---------DEAR3(1)                                 <---------ANAC58  <---------ABI4(1)          --------->ETT(1)                                   <---------bZIP60(2)<---------DEAR3(1)          <---------RAP2.3(3)                                <---------ANAC46<---------DEAR3(1)          <---------RAP2.3(2)         --------->PCF2      ----------->HVH21 <---------LBD16--------->ORA47(2)         --------->RAP2.6(3)--------->At4g35610      <---------ZAT6        --------->ANAC46--------->DEAR3(2) -DOF2  <-----------HVH21--------->At4g35610      --------->STY1(1)<----------DOF2--------->DOF5.7(2)   ttcttcgccttgtcggctctggttgacggcagacgaattggacccattctgcctagggttatgacgcgtctttgtactcgcggcggtaacgccgccgacc  4368200                                                     <---------HSFC1(2)                                                     --------->HSFB2a(1)                                                     <---------HSFB2a(1)                                                     --------->HSFC1(2)                                       <----------DOF2                                      <---------ANAC58       --------->ANAC58               <---------ANAC46       --------->ANAC58               <---------ANAC58  --------->HSFB2a(2)              <--------P   --------->LBD16  <---------HSFB2a(2)             <-------GAMYB<---------HSFB2a(2) --------->YAB1 --ALFIN1                        <---------MYB46(3) --------->GLK1(2) ->ORA47(1)                     <---------AtMYB61   <---------KAN4(2)                               - -->HVH21                     <-----------RAV1(1)   --------->ARR14(2)          --------->ETT(2)    - >DREB2C(2)                  <------------AtMYB77   <---------ARR14(2) <----------DOF2     <------ZmHOX2a(1) >DEAR3(1)              <---------ANAC58       --------->HSFB2a(2)<------ZmHOX2a(2)       <----------ID1 >DEAR4(1)              <---------ANAC58      <---------LBD16     ================================HOX2a_HOX2a   tcgtctcgaacgaaatttcatcgttgtcgtaactgtggttgcttttattctgggaatcttcgaagtcgatcatctttcgatttcgacagagaaggacgag  4368300                                                                                            <--------                                                                                        <---------ARR11(3)                ---------->DOF2                                                         --------->ARR11(3)         ---------->DOF2              ------------------------>ANAC81  ----------->GT1  <---------GLK1(2)    ---------->DOF2         <------ZmHOX2a(2)                         --------->YAB1  <xxxxxxxxxxxxxx -------->CCA1(2)          --------->ARR14(2)              <------ZmHOX2a(1)     <----------ID1 -------->At4g35610        <---------ARR14(2)          --------->TOE1(2)       ---------->DOF2    ---   agagatgaaagaaaagagcaaagaaggcagatcgagtaagagggaatagaagagaaacgaaggagatagcaataagaaaaaaaaagacgagatttttcta  4368400                                                                       <---------TGA1a                                                                       <---------ANAC55(2)                                                                       --------->bZIP60(1)                                                                       --------->TGA2(1)                                                                       ==============================                                                                       <---------ANAC46                                                                       <---------TGA2(1)                                                                       >>>>>>>>>>HY5                                                                       <---------bZIP60(2)                                                                       --------->O2                                                                     <---------TGA2(2)                                                                    ----------->HVH21                                                                    ----------->TGA1                                                                  ===================================                                                                  <---------ANAC46                                                                  --------->ANAC55(2)                                                                  <---------ANAC55(2)                                                                  <---------ANAC58                                                                  <---------TGA1a                                                                  <---------ANAC58                                                                  <---------bZIP60(1)                                                                  <---------bZIP60(2)                                                                  --------->bZIP60(1)                                                                  --------->TGA1a                                                                  --------->O2                                                                  <---------O2--------->ALFIN1                                                               ----------->HVH21                                                               --------->WRKY12                                                             --------->At4g35610                                                             <---------At4g35610                                                             ===============MYC_MYB--------->ALFIN1                          ==================================================bZIP_DOF                 --------->At5g28300                    <---------ANAC46<-----------HVH21                ----------->GT1                       <---------ANAC58 <---------O2<---------AtMYB61              <---------ZAT18                         <---------ANAC46 <---------bZIP60(1)              --------->ZAT14                 ==============================bZIP_DOF<---------O2   --   --------->ANAC46    --------->YAB1         <----------DOF2<-------GAMYB  <---------O2          <-- ---GT1  ---------->DOF2  ---------->DOF2     ===================================bZIP_DOF  ---------- xxxxxxxsmallRNA(fl3) <---------AHL20(2)  <-----------GT1    ====================MYC_MYB   <xxxxxxxxx ------>ZAT6  --------->ZAT18    <------ZmHOX2a(1)    <---------ANAC58 --------->TGA1a--------->ALFIN1   cctctacaaaacaaagcgcagtaaataataaaggaggagagaagttacctttagagtcgtgtgagttgacgtgacgtcaagtggagaggtgggaagttat  4368500                                                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                                                            --------->At4g35610                                                                            <---------At4g35610                                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                                          --------->ZAT18                                                                          <---------ZAT14                                                                          --------->ABI4(2)                                                                          --------->ZAT14                                                                          <---------ZAT18                                                                         --------->ALFIN1                                                                      --------->ALFIN1                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                  <---------At4g35610               -                                                                  --------->At4g35610               -                                                 ----------->RAV1(2)  <---------DEAR3(1)           xx                                     ------>ZmHOX2a(2)          <-----------RAV1(2)               ---                                    <------ZmHOX2a(2)  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         ---       <---------ICU4              --------->ARR11(3)  <xxxxxxxxxxxxxxxxsmallRNA(i)               <--       --------->YAB1              <---------ARR14(2)  ------>ZmHOX2a(2)<---------SPL7      <xxxxxxxx =========bZIP_DOF                 <---------ARR11(3)<---------ARR14(2)<---------ANAC58    <xxxxxxxxx =========bZIP_DOF                 --------->ARR14(2)--------->ARR14(2)<---------ANAC58    <---------ALFIN1 -------->DOF2                    <---------GLK1(1)xxxxxxxxxxxxxxxx>smallRNA(s)       --------->ANAC58 -------AHL20(2)                  --------->GLK1(1)----------->HVH21 <-------TEIL     --------->ANAC58 ->GT1--------->ICU4        ------>ZmHOX2a(2)    <------NtERF2 <---------MYB52(1)   --------->CCA1(2) xxxxxxxxxxxxsmallRNA(fl3) <------ZmHOX2a(2)    ------>NtERF2 <-----------HVH21xxxxxxxxxxxxxxxxxxxxxx   ttaaagccatcatcaccacaatttttgagatcgcagagatcccttcttcgcgcctgatctggaccgtcagatgcggtgcgctgaagagacgctccatctc  4368600           xxxxxxxxxxxxxxxx>smallRNA(i)           --------->At4g35610           <---------At4g35610           <---------ZAT2           --------->ZAT2                <---------ARR11(3)      --------->ANAC46                   --------->ARR11(3)      --------->bZIP60(2)            --------->ANAC46      <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------HSFB2a(2)      <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->HSFB2a(2)    <---------ALFIN1          <---------ARR11(1) --------->ORA47(1)           --------->ARR14(2)                   <---------AHL20(2) <---------RAP2.6(3)          <---------ARR14(2)                  <---------AHL20(2)                - -------->DEAR3(1)            <-----------ARR10           --------->At4g35610                    ---- -------->RAP2.6(2)           ------->TEIL               --------->GLK1(2)                      <xxxx xxxxxxxxxxxxxx>smallRNA(i)  <---------ARR14(1)         <---------GLK1(2)                      xxxxxx ------>ZAT2*TSS           <---------ANAC46            <------ZmHOX2a(1)                   ------>ZmHOX2a(1) ------>At4g35610          <---------ANAC58          <---------TOE1(3)                     ========== -------At4g35610          <---------ANAC58          <---------TOE2(3)                    --------->TOE2(3) xxxxxxxxxxxxxxxsmallRNA(si3)<---------CCA1(2)       --------->ANAC55(2)          <---------ANAC46  - xxxxxxxxxsmallRNA(fl3)    <---------ANAC55(2)    <---------MYB52(1)       <------------CBF<xxxxxxxxx x>smallRNA(si3)           --------->ANAC55(2)   <-------GAMYB    --------->AHL20(2)      --------->TOE1(3)   agccgtccacatcagcagcgacttatctcgcgtatctactcgaaatctttcggttaaggaatctgaaattaaatcgaaattgttgagtttatcctcaaaa  4368700                             ----------->HVH21      ------>ZmHOX2a(2)     <---------MYB59    --------->ARR11(3)     --------->ANAC55(2)    <---------ARR11(3)     xxxxxxxxxxxxxxxx>smallRNA(i) ----->MYB83          --------->At4g35610                                     <---------ANAC46 ----->DEAR3(2)   <-----------GT1          <------NtERF2                     --------->ALFIN1      <- xxxxxxxxxxxxsmallRNA(s)   ----------->RAV1(2)       --------->ARR14(2)    --------->ALFIN1       <-- xxxxxxxxxx>smallRNA(i)   -------->P       <---------At4g35610   --------->ANAC58                 --- ============HOX2a_HOX2a <-----------GT1   --------->At4g35610   --------->ANAC58     <-----------RAV1(1) ----->MYB46(1)  --------->YAB1          --------->ZAT18         --------->ANAC46<------NtERF2    <-- xxxxxxxsmallRNA(i) --------->YAB1       <---------ZAT18 ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ccgactgatcttatcacatttatcatcttacctgacctatatgtccgctcatcgagttcctctactcactcaatgggctggggggcaaatgttggggctg  4368800                                                                                      <---------ANAC58                                                                                      <---------bZIP60(2)                                                                                      <---------ANAC58                                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                   ----------->HVH21                                                                                   <xxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  <---------MYB52(2)                                                                                 ====================                                                                                 --------->At4g35610                                                                                 ----------->RAV1(2)                                                                                 --------->ZAT2                                                                                 <---------ZAT2                                                                                 <---------At4g35610                                                                                ------->TEIL                                                                             --------->ANAC58                                                                             --------->ANAC58                                                                             --------->ANAC46     xxx                                                                            ------>MYB46(1)       ---                                                                            ------>MYB83          ---            <---------ARR14(2)                                             xxxxxxxxxxxxxxxx>smallRNA(i)            --------->ARR14(2)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           --------->GLK1(1)                           ------>MYB46(1)    <---------SPL7       ------          <------ZmHOX2a(1)                            ------>MYB83       --------->AtMYB61--------->ZAT18        --------->LBD16                                --------->ANAC58 <-----------ARR10  <---------ZAT18       <---------HSFB2a(2)              ----------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ---       --------->HSFB2a(2)             <---------ZAT18 --------->ANAC58<------ZmHOX2a(1) --------->PCF2    --------->ANAC46                 --------->At4g35610  --------->ZAT18 --------->TOE1(2)--------->RAP2.3(3)  xxxxxxxxxxxxxxxx>smallRNA(i)  ------>MYB46(1)      ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-----------------AGL1         --------->ANAC58     --------->AtMYB61xxxxxxxxxxxxxxxx>smallRNA(le3)x --------GLK1(1)                --------->ANAC58     <---------ALFIN1 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -------GLK1(2)   <-------PIF5  ------>MYB83---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxx ------>ARR14(2)  ------->PIF5  --------->ANAC46 --------->ZAT18    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -------ARR14(2) ----------->RAV1(2) <---------At4g35610xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)---------   gattcccctccaggaatccacctgcaaaaataccaagccagcccacaaaagcccaccaagcccaccaagtagaggacctacgcagctgacgagcccacat  4368900                                                                                                   --                                                                                                  <--                                                                                                  <--                                                                                                  ---                                 <---------At4g35610                                             <---                                 --------->At4g35610                                             <---                                 --------->ANAC55(2)                                             <---                                 ----------->RAV1(2)                                             ----                                 <---------ANAC55(2)                                             <---                             <-----------HVH21                                                  -----                       --------->ANAC58                                                         <----          <---------ANAC58   <xxxxxxxxxxxxxxxxsmallRNA(s)                                       <----  xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                             ----- xxxxxxsmallRNA(le3)   --------->ANAC58                                                         ----- xxxx>smallRNA(fl3)  ---------->DOF2                                                            <---- ===RAV   <---------ANAC58<xxxxxxxxxxxxxxxxsmallRNA(s)                                         ------ xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              --------->CCA1(2)  <------ZmHOX2a(1)           ------ ------>ANAC58      --------->ARR14(2)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            ------ ------>ANAC58   <-----------RAV1(2)       ----------->GT1     --------->TOE1(2)               ------ --->ARR14(2)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->YAB1                <-----------RAV1(2) ------>ANAC46  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ICU4             xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ALFIN1< xxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------REM1(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<------ -->RAV1(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ICU4 --------->ICU4<-----------HVH21   acgcgaatgggtacttgggccagataagcccagtcacctgatgaagggagataagcgaataatgacctaggaactgatgagtagaggtgtcagacgggcc  4369000     <------NtERF2    ------>NtERF2  <------NtERF2  --------->ATERF1(1) <---------ALFIN1 <---------ATERF1(1) ------->SPL7 -------PCF5 ----NtERF2 ------>ATERF1(1) ------RAP2.6(3) ------SPL7 ------DEAR3(2) -->NtERF2                                       ------>NtERF2 ------ATERF1(1)                                ----------->HVH21 ---->DEAR3(1)                                 --------->ATERF1(1) -----DEAR3(1)                                 ------>NtERF2 -----ATERF1(2)                                <------NtERF2 ---->ATERF1(2)                          <---------ANAC58  <-----------------AGL1 ---->RAP2.6(2)            <---------ZAT18    --------->RAP2.6(2) -----RAP2.6(2)  <------NtERF2           <---------ANAC58  ----------------->AGL1 --->DEAR3(2)    ------>NtERF2         <-----------GT1 <--------P                                 <-- --->SPL7       --------->ANAC58   <----------DOF2 <---------ANAC46 <------ZmHOX2a(1)          ------ --->ATERF1(1)  --------->ANAC46  <-----------------AGL3 <------MYB83   <---------At4g35610    ------ --->RAP2.6(3)  --------->ANAC58  <-----------------AGL2 <------MYB46(1)--------->At4g35610    ------ ---------DEAR3(1)        --------->ALFIN1   <---------DEAR3(1)<---------MYB52(1)    <---------YAB1 < ---ATERF1(1)  <---------ZAT18 <----------DOF2<---------ATERF1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ggcccgcgcccatctagcccgcctcgcagtgggctttcttttttcgggccgcgacgggttggcccgtttaggaccgcagacaaaattatcagtgtccaag  4369100  Previous    Next  AGI:  At4g07530.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30810.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04070.1); similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G08113.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436) Range:  from: 4365347    to: 4368612    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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