Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->bZIP60(1)                            --------->TGA1a                    <---------At4g35610                            <---------O2                  <---------O2                            --------->O2                  --------->O2                          ------>NtERF2                 ------>NtERF2                          <---------RAP2.6(3)          --------->DEAR3(1)                         --------->DEAR3(1)           <------NtERF2                      ------>ZmHOX2a(1)              <---------RAP2.3(1)                    --------->At4g35610              <---------DEAR3(2)                --------->At4g35610                    ----------->RAV1(2)              ------>NtERF2            <------NtERF2                    <---------At4g35610              <---------ATERF1(1)     ------>NtERF2               ------>MYB46(1)                      <---------DEAR3(1)       --------->LBD16             <---------MYB59<---------ANAC46        <---------At1g77200      <---------ATERF1(1)             <---------MYB111(1)                   <------NtERF2            --------->ATERF1(2)            --------->HSFB2a(1)                    --------->ATERF1(1)      <---------ATERF1(2)           ------->TEIL --------->DEAR3(2)        <---------SPL7            <---------DEAR3(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)                    <-----------HVH21         --------->DEAR3(1) ---------MYB59-------->P----------->HVH21        ------>NtERF2--------->At4g35610     <---------At4g35610 ---->DOF5.7(2)------>MYB83<------NtERF2 ------>NtERF2--------->ATERF1(1)  --------->ATERF1(1)      - -----MYB52(1) =======================MYC_MYB     <---------ATERF1(1)      <---------LBD16         <- --GAMYB   <-----------ARR10<---------TGA1a      --------->DEAR3(1)       <---------RAP2.3(1)    <---   taccaaaatcgcgaacctactctcctgccgacgtgattttctccgacttcgccgtcggcgacttgagcttcgatttcgccggcgatttgagctctaattt  4336200                                                                                            ------>ZmHOX2a(2)                                   --------->ANAC46                                        <------ZmHOX2a(2)                               <xxxxxxxxxxxxxxxxsmallRNA(s)                          <---------ARR14(2)                            <---------At4g35610                                      --------->ARR14(2)                            --------->ZAT2 --------->GLK1(2)--------->At4g35610 ----------->GT1          --------->At4g35610<---------ANAC58               <---------At4g35610--------->DAG2          <---------At4g35610<---------ANAC58             --------->ZAT18     ---------->DOF2       <<<<<<<<<AtCCA1      <---------HSFC1(2)            <---------ZAT18 ------->GAMYB   --------->ARR14(2)       <<<<<<<<<AtLHY       --------->HSFB2a(1)      ---------->DOF2     --------->ANAC46 <---------ARR14(2) -------->DEAR3(1)          --------->HSFC1(2) --------->At4g35610=================================HOX2a_HOX2a --------LBD16              --------->At4g35610<---------At4g35610------>ZmHOX2a(1) <---------GLK1(1) --------GT1        <---------GLK1(1) <xxxxxxxxxxxxxxxxsmallRNA(s)================================HOX2a_HOX2a   caccggcgagttagcttccaagatagccgtagcttccaagccgataatctgctcccaaagtgagcttcctcttcaacggcaaaagtaaatccgatctcgt  4336300                                      ----------->GT1                                      <---------MYB46(3)                                    <-------GAMYB                                   --------->MYB52(2)                         <-----------RAV1(1)                       <---------ANAC58            <---------AHL20(2)                       <---------ANAC58           --------->AHL20(2)                     --------->ARR11(3)         --------->TOE2(3)             <-------GAMYB             <---------TOE2(3)  ------------>MYB.PH3(2)                      <---------MYB46(3)   xxx   tttcatatgtagattaatgtgaatttcttgttggagttagttgttaataacataaaattgttgtattgttcattctgggctgttgtatcgttttgaatca  4336400                                                                                  --------->YAB1                                                                                 <---------AHL20(2)                                                                  ----------->GT1<---------YAB1                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->AHL20(2)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->CCA1(2)                            <---------YAB1              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           <---------ZAT6  <---------TOE2(3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ZAT14        <-----------GT1            <---------ARR14(2)       --------->ARR11(3)   --------->ZAT14 --------->YAB1----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    ---------->DOF2 xxxxxxxxxxxxxxxxxxx>smallRNA(se3)         --------->LBD16<----------ID1      <---------ARR11(3)   gagagtttagtgagtgttcaatcgaaatttacgatttgtgaaacccagaattgacgaactgggacaaatggtaaaactgagatataatagtataagcggt  4336500                                                                                               <-----                                                                     <---------AHL20(2)    <---------ANAC46                                                                     --------->AHL20(2)    --------->ANAC55(1)                                                                     --------->ATHB51      <---------ANAC55(1)                                                                     <---------ICU4        --------->ANAC55(2)                                                                     <--------HAHB4        <---------ANAC55(2)                                                                ------------>CBF           <---------ANAC58                              ----------->GT1               <---------------AtSPL8         --------->ANAC58                           <---------ZAT2              --------->YAB1-------->ATHB1        --------->ANAC46                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------------->AtSPL8         <---------ANAC58                       <------ZmHOX2a(1)               --------->AHL20(2)                  --------->ANAC58                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------YAB1<---------ATHB51  <---------ICU4                <-------TEIL --------->ALFIN1       --------->YAB1  --------->ICU4    --------->ATHB12               --------->CCA1(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->YAB1      <---------AHL20(2) <-----------RAV1(2)     ----------->GT1<-------TEIL         --------->ICU4     <----------DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------------->AtSPL3  <---------WOX13(1)   acaagtgttttattgagatacaataggacaggtggtacaaatggtattagtgagttataatataggtacaattatttctaaatctgaatgattacgtaat  4336600            --------->AHL20(2)            <---------AHL20(2)           <---------AHL20(2)                        --------->YAB1           --------->AHL20(1)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           --------->AHL20(2)     *TSS     --------->ANAC58                                      ----       <---------AHL20(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             <---       <---------YAB1      <------ZmHOX2a(1)        <-------TEIL                                >>>>>     --------->YAB1     <-----------RAV1(2)--------->ANAC58                               --------->ATHB12    <---------YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <---------At4g35610   <-----------TBP xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <<<<<<<<<<<<<<<<<LFY    xxxxxxxxxxxxxx -------CBF<---------AHL20(1)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------YAB1 <---------YAB1   tgtgtttttataatttatttgtaattacaggagacgatgaagaacaagcacacattcatacaatttgacaatgggtattattcagaagagcatgagtgga  4336700                                            ----------->ARR10        --------->GLK1(1)                                        ----------->GT1              --------->CCA1(2)                                       <---------TOE2(3)            <---------ARR14(2)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     ---------->DOF2                --------->ARR11(3)          <----------DOF2         <-----------HVH21                 --------->ARR14(2)          <---------------AGL15  --------->ANAC58                   <---------ARR11(3) ----->GLK1(1)     <---------ANAC46 <---------WRKY12                --------->ARR11(1)              < ------GLK1(1)   ----------->GT1 --------->bZIP60(2)              ----------->ARR10              <xxx >>>>>GATA-1    --------->ALFIN1 --------->ANAC46               ---------->DOF2--------->ATHB12  ---- xxxxxxxxx>smallRNA(si3)         --------->ANAC58              XXXXXXXXXXXXXXXXXXXX>MIR835-3P    ----   tttcaaacaattctttaagtggtgtattgttgagcacgtcaaaggtaacatactctatgttagtagaaaagatatgcaagaagattggaatagatgaaac  4336800      ----------->GT1      <------MYB83     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <------MYB46(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <----------DOF2 --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------------AGL15 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                 --------------->AGL15 xxxxxxxxxxxxxsmallRNA(i)   --------->AtLEC2                        ----------------->AGL3 ----->TOE2(3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------YAB1          ------->GAMYB ----->TOE1(3)  ----------->GT1------->TEIL               <---------At4g35610       --------->MYB52(1)   ctcaaggaaggtgaaattgagttatattctatgcacatctcagagacagacatctattgtagatgatgatgcctttttaagttatctaacggtagtgaat  4336900                                                                                                xxxxx                                                                                                xxxxx                                                                                               <-----                                                                                               ------                            <---------AtMYB61                                                <------MYB83                         --------->ALFIN1                                                    <------MYB46(1)                        <-------MYC3                                                        <--------                        ------->MYC3        --------->ARR14(2)                              <--------                        ------->MYC2        <---------ARR14(2)                             <---------MYB52(1)                        <-------MYC2        --------->GLK1(2)                             <-------GAMYB                      ------->TEIL         <---------GLK1(2)                              xxxxxxxxxxx                 <----------DOF2       ---------->DOF2                                    <---------At4g35610               --------->ZAT2   ----------->GT1        --------->ALFIN1              xxxxxxxxxxxxxxxx   gctaagagaattagaccagctttgaacgtggaggtagtaaataaagaatctgagagggtggaacaaatttcaagggtagagagaagaagttcagttggtg  4337000        <------ZmHOX2a(1)    <---------YAB1  <---------ICU4  -------->HAHB4  --------->YAB1 --------->ICU4                                                         <------ZmHOX2a(1) <---------ATHB51                                                    <-----------RAV1(2)      ------- xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   --------->ZAT14      --------->YAB1 xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----ZAT6                                                       --------->GLK1(2)       --------->ICU4 ----->GT1                                                  <------ZmHOX2a(1)     <---------ANAC58 -MYB46(3)               <---------REM1(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxx -AtMYB61          ------->TEIL              ----------->TGA1   <---------ARR14(2)<---------ANAC58  - xxxxxxxxxxxx>smallRNA(i2)              <---------ANAC46   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <- xxxxxxx>smallRNA(si3)  <---------TOE2(3)    ----------->HVH21  --------->ARR14(2)<---------ANAC46 <-   ttaattatgaggagttgaatgcatttgatgtagagaatggtggagtagtgacgatttttagaggagaaactgcaggaggtaattgtgtgaatgatgaacc  4337100  Previous    Next  AGI:  At4g07522.1    Description:  transposable element gene. Mutator-like transposase family, has a 2.0e-76 P-value blast match to O22278 /203-375 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 4336634    to: 4339122    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version