Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                  <--                                                                                                  ---                                                                                               ------                                                                                               <-----                                                                                             <-------                                                                                           --------->ARR14(2)                                                                                           <---------ARR14(2)                                                                                         <---------MYB46(3)                                                                                        --------->ALFIN1                     <------NtERF2                                                    <---------ANAC46                    <---------MYB46(3)                                                --------->O2<--                   <---------ANAC46                                                   <---------O2---                   --------->ALFIN1                                                   <---------TGA1a           <---------HSFB2a(2)                                       <---------GLK1(1)--------->TGA1a           --------->HSFB2a(2)                                  <-------GAMYB         <---------bZIP60(2)          <---------LBD16                                       ================================MYC_MYB   <---------MYB46(3)<---------ANAC46       <---------YAB1   <---------ANAC58        xxxxxxxxxxxxxxxx -->At4g35610   <---------AtMYB61           <---------TOE2(3)<---------ANAC58      <---------TOE2(1) ---ZAT2 ====================================HOX2a_HOX2a     <---------ANAC46      <---------TOE1(1) ---At4g35610   --------->ALFIN1  ----------->HVH21     --------->ALFIN1          --------->SPL7<---- -HVH21  ------>ZmHOX2a(1)<-------TEIL------>ZmHOX2a(2)<---------ARR14(2)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   catagtcgttcctctggaatggtgggggtacaatcgctgatcgattaacatagaacaggtctggcctgttgaaatccccaagagtacgacgtggttccgc  4160500                                 <------NtERF2                                     <---------At4g35610                             <------MYB46(1)                                       --------->ZAT2                            <---------AtMYB61                                      --------->At4g35610     <------ZmHOX2a(1)     <--------P                                            xxxxxxxxxxxxxxxxxxxx -------->RAV1(2)        <-----------RAV1(1)               ----------->HVH21    <---------ZAT2 -------At4g35610        --------->ALFIN1        <---------MYB52(1)             <---------At4g35610 ------>At4g35610   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->SPL7       --------->ALFIN1 --->LBD16         <---------ARR14(2)           <-------GAMYB  ------>NtERF2 <---------ANAC46 ----At4g35610     --------->GLK1(2)           <-----------RAV1(1)           <---------ANAC58 --LBD16  --------->At4g35610<------MYB83 ------>NtERF2<---------ANAC46      <---------ANAC58    ---- -------ZAT2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------SPL7   --------->At4g35610    <---- ------>ZAT2       --------->ARR14(2)    <---------ALFIN1xxxxxxxxxxxxxxxx>smallRNA(s)      <---------AtMYB61 >smallRNA(i)     <---------GLK1(2)   <---------ETT(2) <---------ANAC58  <---------At4g35610  <------ -------RAV1(2)  <------ZmHOX2a(1)--------->ETT(2)     <---------ANAC58 ------->TEIL   <xxxxxxxxxxxxx   agctggaggaatagctgtaggaatctggtgttggtgtcgatcgacacctctgttgtgtcgttcgacaccgattgcatctgcgtgctgctcccgatggtgt  4160600                                 <---------AtMYB61                         <---------At4g35610                         --------->ZAT2                            --------->ZAT2                         --------->At4g35610                       --------->At4g35610     --------->DEAR3(1)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------At4g35610  --------->ANAC58                      <---------At4g35610                       <---------ZAT2       <---------ETT(2)                      <---------ZAT2                         <---------ANAC58        --------->ANAC58     ------>NtERF2 <---------ANAC58            ------>NtERF2 <---------ANAC46        ----------->HVH21 <---------ETT(2)  <---------ANAC46        <---------ETT(2)  <---------ANAC58   <------NtERF2 xxx>smallRNA(le3) <---------ANAC58     <XXXXXXXXXXXXXXXXXXXXMIR401<---------At4g35610   ------>NtERF2 ----->ETT(2)  --------->At4g35610     --------->ETT(2)  --------->At4g35610  <---------REM1(1) --NtERF2      <---------At4g35610  <---------ANAC46     <---------At4g35610  <-----------RAV1(1) ---ANAC46    ------->TEIL   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ALFIN1<-----------HVH21 xxxxxxxsmallRNA(fl3)--------->ALFIN1 <------NtERF2     ------->TEIL       <---------AtMYB61      ---   cgatcgacaccgattgcatctgcgtgctgctcccgatggtgtcgatcgacaccaattgcatctgcgtgctgctcccgatggtgtcgctcgacaccgagcc  4160700                                                                <------ZmHOX2a(1)                                                        <---------MYB52(1)                                                        ------>ZmHOX2a(1)                                                   <---------ANAC58                                                   <---------ANAC58                                            ------>ZmHOX2a(1)  <------MYB46(1)                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              --------->At4g35610         ------>ZmHOX2a(2)    <------MYB83 --------->ARR11(3) ------    ------->TEIL        <---------AtLEC2  =============================HOX2a_HOX2a             ------   --------->REM1(1)   --------->ZAT18    =====================HOX2a_HOX2a  <---------ARR11(3) <xxxxx ------>AtLEC2<---------At4g35610       <---------ARR11(3)   <--------P    --------->YAB1----------->HVH21   atgctgcatctctagcagctaattgtgcattgagacgcgcttgatcctcatttgcgtccttaggtaggatgagtccatgatcatccaatctctgaccagc  4160800                                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                                         xxxxxxxxxxxxxxxx>smallRNA(s)                                                   <---------At4g35610                                                   --------->At4g35610                                                xxxxxxxxxxxxxxxx>smallRNA(s)                     <---                                              <---------At4g35610                                <---                      <---------CCA1(2)       --------->At4g35610                                <---                   ------>ZmHOX2a(1)          --------->ZAT2                                <--------        <---------ANAC58                   <---------At4g35610                             <--------P >MYB83 <---------ANAC58                  <-----------HVH21             *TSS               <---------WOX13(1) >MYB46(1)        --------->TOE2(3) ------>ZmHOX2a(1)  xxxxxxxxxxxxxxxx>smallRNA(s)       <-------GAMYB xxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <-----------HVH21            <---------MYB46(3)   ctcattgtaggcctgcccatcctcatctctcaaaactccttctgcatcagctctgatgactctgtcagccattgctaatttctgagttttttggttgatg  4160900 ------ANAC58                                       ---------->DOF2                     --------->ANAC58 ------ANAC46       <<<<<<<ZML2              <---------HSFB2a(2)                        --------->ANAC58 ------ANAC58    <---------HSFB2a(2)         --------->HSFB2a(2)           ----------->GT1  <-------- -MYB46(3)       --------->HSFB2a(2)      ------>ZmHOX2a(1)  ----------->GT1            --------->ANAC46   cgttcaagttttcccaagtctagaacagacaagttgataagctccttctgtaaacaaaggggtgagtaacaaaatagaagtaaaaactatacgaaatctc  4161000                         --------->ARR11(3)                --------->KAN4(2)       ------>NtERF2               <---------ICU4          --------->ANAC58              --------->ICU4           --------->ANAC46              <---------YAB1         ------->GAMYB            --------->YAB1          --------->DEAR3(1)           <---------ANAC55(2)       ==========            <---------ICU4          --------->MYB46(3)           <---------ANAC58          <------ZmHOX2a(2)           --------->ICU4<---------ARR11(3)                      <---------ANAC58         <---------ARR11(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->ANAC58          <---------ANAC46         --------->ARR11(3) -ARR11(3) <---------ATHB12    --------->HSFB2a(2)             <---------AHL20(2)         xxxxxxxxxxx   taaactaaactcaatgatgattcccaagaacttcggcaacgacgccaaatttgatattgttcaaattacttgaactactctctcaaataagagatcaatt  4161100                         <---------ARR11(3)                         --------->ARR11(3)                        <---------GLK1(1)                    --------->ANAC46                   <---------LBD16                  --------->MYB52(1)               --------->ARR14(2)                                              <---------ZAT6            ------>ZmHOX2a(2)                                                ----------->GT1      ---         <------ZmHOX2a(1)                                         <---------ZAT2      ---------->DOF2       <---------TOE2(3)--------->GLK1(1)                          --------->ZAT2     --------->AHL20(2) ===============HOX2a_HOX2a                             <---------TOE2(3)   --------->ICU4  <-------- xxxxxxxxxxxx>smallRNA(si3) <----------DOF2 ----------->GT1   <---------TOE2(3)----------->GT1  -----   gcagtattttaggatcgaattcacggagttcttttgttcaaacaatgagttaaatgttgagattaagctagcagggtaatagtgaaaataaaagagaaca  4161200                                                                                       ------>ZmHOX2a(2)                                                                                      <------ZmHOX2a(2)                                                                                     --------->ARR14(2)                                                                                     --------->ARR11(3)                                                                                     <---------AGP1                       <---------ANAC58                                              <---------ARR14(2)                       <-------GAMYB                                                 --------->AGP1                       <---------ANAC58                                              <---------ARR11(3)                      <------MYB46(1)             <------ZmHOX2a(1)             --------->MYB52(2)   ---------->DOF2    <------MYB83          --------->ARR11(3)              <---------MYB46(3)      < -------->GT1        <---------AtMYB61  ---------->DOF2                 --------->ATHB12     -------- --ID1           --------->ATHB12   <---------AHL20(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)< ----->DOF2    <---------WOX13(1)  --------->AHL20(2)      --------->ARR14(2) <--------P   <---------ZAT6   aagtaaaaagacagtagattgatttggttgtgaacgatttaataaagagctaggaacaaagtattctcagaaaactattggttagtagatctagtgaaag  4161300                                                                  --------->HSFC1(2)                                                                  --------->HSFB2a(1)                                                                  <---------HSFB2a(1)                                                              --------->ANAC58                                                              --------->ANAC58                                                              --------->ANAC46                                                             ------>NtERF2                                                             --------->LBD16                                                            <---------ANAC46                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                          --------->SPL7                                                         --------->ALFIN1                                                         ----------->HVH21                                                <-----------RAV1(1)                                 -                                             --------->MYB52(1)   <---------HSFC1(2)              ---                                       <---------TOE2(3)<---------SPL7                  --------->YAB1                                     -------->HAHB4  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ---------                                     <---------ICU4 <---------DEAR3(1)                  <---------ICU4                                    <---------ATHB51<---------MYB46(3)            <---------At4g35610 ------MYB46(1)                  --------------->AGL15 <---------ANAC58    <---------ARR11(3)  ------ -->DOF2          --------->TOE2(3) --------->ICU4 --------->ALFIN1        --------->ARR14(2)<------- ------MYB83    <---------YAB1   <---------------AGL15 <---------ANAC58   <---------CCA1(2)<---------   ctaggttttaaacgaactattcttaaactcaaactctaattatggaataactggtgggcgtgccgcgaaactccctatatctgtagctaataataaccgg  4161400  Previous    Next  AGI:  At4g07339.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 3.1e-75 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 4157877    to: 4160872    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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