Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->ANAC58                        --------->ANAC58                     ---------->DOF2                 ----------->HVH21                --------->LBD16               <---------ANAC58               --------->ANAC55(2)               <---------ANAC58                                                               <------               <---------ANAC55(2)                                               --------->ARR11(3)            --------->ARR14(2)                    --------->ZAT14                <-----------ARR10 -->TEIL    <---------ARR14(2)                    <---------ZAT18                --------->GLK1(2)   tcacttcttcgttgaatccgtgacaaaggcaattcgtttacaaatctcttcgttcactcaggctccagtcgagtcccttagagcatcttggctctgtttc  4135100                                                                                      --------->LBD16                                                                                    <---------LBD16                                                                             --------->ANAC58                                                                             --------->ANAC46                                                                             --------->ANAC58                                <-----------------AGL1                 --------->DEAR3(2)                             <---------ANAC58                          --------->MYB46(3)         <---------ANAC46    <---------ANAC58                   ---------->DOF2   <---------ARR14(2) -----HVH21           ----------->RAV1(1)              <---------ARR11(3)  ---------->DOF2         <-   aggtcttatcagcgtgaatgtccccaacatggcttccaagagaggccaactcatcaacatattctacaaaggaacagacaagccaaaccggaatcaactt  4135200             --------->At5g28300            <---------ZAT6       <---------ZAT2       <---------At4g35610                                                                          -     <---------ZAT18         <---------ARR11(3)                                             ---------   <---------At4g35610     --------->ANAC58                                        ------->GAMYB----- --------REM1(1)           --------->ANAC58<---------ICU4        <----------DOF2  --------->ANAC46<--   gatgcagcgagctactgtaacttcatgacaagaactactagtgaagcattacttctcatcaccaatgctttaacttgtctttcaacgcagggatttgaca  4135300                                                                                        <---------ALFIN1                                                                                       --------->MYB46(3)                                                                                   <---------ALFIN1                                                                                  <---------ALFIN1                                                                                <---------ALFIN1                                                                                <---------ATERF1(1)                                --------->ANAC58                               <---------ALFIN1                           <------NtERF2                                       <---------ATERF1(1)                          ------>NtERF2                                       --------->DEAR3(1)                          <---------At5g28300                                 <---------ATERF1(1)                         <---------ALFIN1                                     <---------ALFIN1              <---------At4g35610                                            <---------ATERF1(1)              --------->At4g35610                                           --------->DEAR3(1)              ----------->RAV1(2)  ---------->DOF2                       --------->ANAC58              <---------ZAT2 --------->LBD16                             --------->ANAC58       <---- -------->MYB52(1)       --------->DEAR3(1)                              --------->ANAC46       ----- -->HVH21     --------->ZAT2--------->DEAR3(1)                          <xxxxxxxxxxxxxxxxsmallRNA(i) ----->DOF2 <-----------RAV1(2) --------->ANAC58                   ------>ZmHOX2a(1) --------->ANAC46 -------MYB52(2)        --------->MYB46(3)                    <---------At4g35610<---------ALFIN1   aagaacgaagaatttcagctgagatagccaccgcgagcaaagagactctcgtttcaacaatttctgctcctatccaagccccccccccctccaccctcat  4135400                         --------->LBD16                        --------->ANAC58                        --------->ANAC58                          <---------GLK1(2)                        --------->ANAC46                        <---------YAB1                -------                    <---------ANAC58                            *TSS               ------>ZmHOX2a(2)            <---------ANAC46                  ---------->DOF2 --------->YAB1      <------ZmHOX2a(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->ANAC58       --------->ICU4      --------->ARR11(3) -----At4g35610     <---------ANAC58  --------->ANAC46       --------->ARR14(2)  <---------AGP1 <---- ---->At4g35610   <---------YAB1      --------->ANAC58       <---------ARR14(2)  <---------ARR11(3)   cagagaccagaatggagtctatgcttgcgcaacttcttgcaggccaaacaaagcttgatagcaaatatgattctctctccatagatctcaatagcaagat  4135500                                 <---------HSFC1(2)                                 --------->HSFC1(2)                <------ZmHOX2a(1)<---------At4g35610                                <----------DOF2       --------->ANAC46         --------->ANAC58                                <---------GLK1(2)      --------->ZAT14       --------->ANAC58                                  <---------YAB1    <----  --------->ANAC58          --------->ANAC46                                --------->YAB1      <----  --------->ANAC58    --------->GLK1(1)                                    <---------ATHB12  <------- -->ATHB12   <---------LBD16--------->ANAC58                             --------->WOX13(1)  -------- -----WOX13(1)<---------TOE1(2) --------->ANAC58   <----------DOF2<-----------GT1--------->GLK1(2)  -   tgacactctacgctctcaggaacgaattccaaggaagctacttgatcatggaacttttgtacttagtttcaccatcaatcacgattctttcccaagagct  4135600                      --------->ARR14(2)                                      <----------DOF2      ------>ZmHOX2a(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->TOE2(3)    --------->ARR11(3)------->TEIL                     <---------ANAC58    ------>MYB46(1) ------DOF2           <---------ARR14(2)               <---------ANAC58    ------>MYB83     <-------- -----DAG2       <---------ANAC46               <---------ANAC58           -------->P<---------YAB1 - --ARR11(3)      <---------ZAT6        <-------GAMYB   <---------ANAC46  <---------MYB59    <-------- ->ARR11(3)   >>>>>>>ZML2 --------->At4g35610   <---------ANAC58  --------->YAB1<---------ICU4      < -------->ANAC55(2)   --------->GLK1(2)<---------At4g35610       <---------ATHB12  <-----------GT1 <-   ttatgtgatctcggttctagtgtgaatctgatgcctcgttcagttgctatgcgtcttgggtattccaatcttgagcctacctttattactcttgtcttgg  4135700                                                   <---------WOX13(1)                              <---------YAB1     --------->ATHB12                          --------->GLK1(1)     --------->ICU4              --------->GLK1(1)     <---------TOE2(3)  ---------->DOF2 -ANAC58   --------->ANAC46--------->ICU4       <---------YAB1 -------->ARR14(2)        <---------GLK1(1)   --------->YAB1 -ANAC58-------->P--------->HSFB2a(2)         <---------ICU4          ------>ZmHOX2a(1) ---------ARR14(2)<-----------RAV1(2)        --------->ICU4     --------->ATHB12          <---------DAG2 --------CCA1(2)  <---------HSFB2a(2)        <---------ATHB12  <---------YAB1<----------DOF2  <------   catatcgttctacccgaattccagatggaattcttattgatgttcccatgatgattggaaagagcatgattcctatacactttgtagtcttgccttatga  4135800                                  ------>ZmHOX2a(1)                                <---------HSFC1(2)                                ------>ZmHOX2a(2)                                --------->HSFC1(2)                               <------ZmHOX2a(2)                       ------>ZmHOX2a(1)             =================HOX2a_HOX2a     --------->At4g35610             <-------TEIL     --------->ARR11(3)             ============================HOX2a_HOX2a             ------>ZmHOX2a(2)<---------ARR11(3)            <------ZmHOX2a(2) <---------ARR14(3)            =============================HOX2a_HOX2a            ==================HOX2a_HOX2a     <---------ZAT2           --------->ARR14(2) --------->ARR14(2)                                                    -           <---------ARR14(2) <---------ARR14(2)                               --------->ARR14(2)  <-          <------ZmHOX2a(1)  --------->GLK1(1)--------->ZAT2  --------->ARR11(3)                  ---          =============================HOX2a_HOX2a       --------->YAB1        <---------ARR14(2) <--          ============================HOX2a_HOX2a       <---------ATHB12      <------ZmHOX2a(1)<-----        <---------TOE2(3)    <---------GLK1(1)<---------At4g35610             =======================    <---------At4g35610===============HOX2a_HOX2a     --------->WOX13(1)      =======================    --------->At4g35610================HOX2a_HOX2a   <xxxxxxxxxxxxxxxxsmallRNA(i)         <---------- ---YAB1<---------TOE1(3)   ----------->ARR10 ----------->RAV1(2)   <---------HSFB2a(2)xxxxxxxxxxxxxx   gaaggaagctaaggatccattaatcctagggagatccttcttgcagacagctggagcaatcatagatgttcgacaagggaggatagggctgaatgttggc  4135900 ----->ZmHOX2a(2) -----ZmHOX2a(2)                                 <xxxxxxxxxxxxxxxxsmallRNA(i) ------>ARR11(3)                            --------->YAB1 -------ARR11(3)                           <---------ATHB12 -NtERF2                             --------->MYB52(1)                             <---------At4g35610 ======HOX2a_HOX2a                --------->ANAC58                        <----------DOF2 =====HOX2a_HOX2a                 --------->ANAC58                     --------->GLK1(2) -RAV1(1)                      --------->WRKY18(1) ----------->GT1    <---------GLK1(2)  <----------DOF2 xxxxxxxxx>smallRNA(se3)  <----------DOF2  <------ZmHOX2a(2)       <---------WOX13(1)  --------->At4g35610   gatcttactatgcagttcgatatgaacactttggtcaagaaaccgatcatagaagggaaaaccttcttgatagattctttcacttcatcagctttagata  4136000  Previous    Next  AGI:  At4g07334.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 3.4e-97 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family) Range:  from: 4135464    to: 4139519    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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