Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <---------ANAC58             --------->YAB1                        --------->ANAC46                 <----------DOF2        <---------ZAT2                             --------->ANAC58                 <---------DAG2        <---------At4g35610                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ZAT14        --------->ZAT2                  ----------->HVH21--------->DEAR3(1)      <---------ALFIN1   -        --------->At4g35610         <---------ALFIN1  <---------ALFIN1       <---------ZAT2    <xxxxx      <---------ALFIN1              --------->AtMYB61 --------->DEAR3(1)     --------->ZAT2   ------>ZmHOX2a(2)    ----------->RAV1(1)            --------->MYB46(3)--------->MYB46(3)      <---------At4g35610    <    <---------ALFIN1          --------->AtMYB61<-----------HVH21             --------->At4g35610  ---  <-----------HVH21    --------->ZAT14--------->ANAC46--------->AtMYB61  --------->LBD16<---------ANAC58  ------>NtERF2 <---------ALFIN1--------->MYB46(3) --------->ANAC58    <---------LBD16  --------->ANAC55(2)   actcggccacagctctcatcacctctccactaccacaaccactcgaccccttcacaccaccgtcttctcttcttccgcgagctccactttacttgatccc  4040700                                                <---------ETT(2)                                             ------->GAMYB                                            <<<<<<<<<TAC1                                           ------>MYB46(1)                                           ------>MYB83                                         <---------MYB111(1)            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  --------->ETT(2)                                    < --------->YAB1                          --------->MYB46(3)                                         < -------->MYB46(3)                     -------->P                                                   - xxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->At4g35610                                    <---------ANAC58 ---------ATHB12                    <---------At4g35610                                    <---------ANAC58 ------>WOX13(1)                ------>ZmHOX2a(2)     <---------ATHB12    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   caatcaccatcttcttcatcgtttcatcactcgatcgcatctaccaactgtctacaatcactcgacttcttctcacatcatctcatcaccaattcgtgtc  4040800                                                                                                -----         --------->WOX13(1)                                                                   -------      <-----------HVH21                                                             ------>ZmHOX2a(1)      <-----------TGA1                                         <------MYB46(1) --------->HSFC1(2)     --------->ANAC46       --------->At4g35610                <------MYB83    --------->HSFB2a(1) <---------ALFIN1           <---------At4g35610             <---------MYB52(1) <---------At4g35610 ---------REM1(2)        ----------->RAV1(2)               <---------SPL7      <---------ZAT2 ------- ---------ZAT14        ------->GAMYB     --------->ZAT18  <---------ANAC58     <---------HSFB2a(1) -------->ZAT14       --------->MYB46(3)<------ZmHOX2a(1) <---------ANAC58     <---------HSFC1(2)   tctacactcgtcattcactactcgaccgcctgctctctccaaggacactactcgaccttgtcgttcggtttactagaccgaagctcctgcatagcctcgt  4040900                                                                  ----------->GT1                                                              ---------->DOF2            --------->ANAC58                           ------->GAMYB         <---------ATHB12                             <---------MYB111(1)        --------->ANAC46                              <---------MYB52(2)        --------->ANAC58                --------->YAB1--------->MYB46(3)              --------->AHL20(2)        --------->ANAC58             --------->TOE2(3)<---------MYB55(2)              <---------AHL20(2)   <-----------GT1                   --------->HSFB2a(2)-------->P<----------ID1     --------->AHL20(2) ----->ID1  --------->ANAC58   ------>NtERF2      <------ZmHOX2a(2)            --------->AHL20(2) -->O2<---------ALFIN1  --------->ZAT14 <---------ICU4<---------MYB111(2)     --------->AHL20(2) -->bZIP60(2)    <---------ALFIN1    --------->YAB1   <---------MYB46(2)  --------->AHL20(2)   cgttttcaccactcaagctccatcgcttcactcggccttccataatcactcgatcaactacccataaaacgaaaaaaaaaataaaaaaaaaatttcaaaa  4041000                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                 <---------ANAC46                                                 <---------ANAC58                                                 <---------ANAC58                     --------->TOE2(3)                                               <---------MYB46(3)                   <---------TOE1(3)                                              <---------AtMYB61                    <-----------GT1                                            <---------ANAC46                 --------->ANAC55(2)             ----------->HVH21              <---------ANAC58                <---------TOE2(3)           --------->ANAC46                 <-----------RAV1(1)            --------->MYB52(1)        --------->ARR14(2)                  <---------ANAC58             <---------MYB52(2)        --------->ZAT14                 <----------DOF2                  --------->MYB46(3)<---------YAB1    <---------AtMYB61                  <---------ANAC58          <-----------RAV1(1)<---------TOE2(3)  <----------DOF2    --------->ZAT14   <---------ANAC58      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ccggctttggtatactcgaccggtttactcgacctgtttttgctttgtgtggtttgtgtttttggttttgttggaactaacgtattaacgtttatttttg  4041100                                               ------>ZmHOX2a(1)                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                           --------->ARR14(2)                                 <---------ZAT14                                 --------->ZAT14                   --------->ANAC55(2)     --------->GLK1(2)                   <---------ANAC46        <---------ARR14(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)                   <---------ANAC58  <xxxxxxxxxxxxxxxxsmallRNA(i)                   <---------ANAC58  --------->ALFIN1     <---------YAB1                  --------->ZAT18         <----------DOF2   *TSS <<<<<<<<<<<<<<<<<LFY  ------->TEIL           <---------At4g35610<----        <---------ANAC58  ----------->GT1  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        ------>ZmHOX2a(1)        <---------ANAC58--------->ICU4   xxxxxxxxxxxxxxxx>smallRNA(i)       ------->TEIL  <---------ZAT18 <-------TEIL      <---------ANAC55(2)--------->ZAT14xxxxxxxxxxxxxxxx>smallRNA(i)     <-----------RAV1(1)   agttacatttgctttcaagtttcgtaatgagtaactacagtggagaatcctctatggaccctgattacaatgtggatgaagctaagtcctggtgcgctag  4041200                                                            --------->TGA2(2)                                                          --------->ANAC58                                                          --------->ANAC46                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                    ------>NtERF2                                                 --------->ZAT14                                                 <---------At4g35610                                                 --------->ZAT2                                                 <---------ZAT14                                                 --------->At4g35610                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                           --------->ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(i)                                           --------->ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <                                           --------->HSFB2a(1)           --------->At4g35610        <                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       xx         xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                        <x        ----------->RAV1(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------At4g35610      xxx        ===============================RAV <---------HSFB2a(1)  --------->YAB1                    <--     --------->ANAC58      <-----------RAV1(2) <xxxxxxxxxxxxxxxxsmallRNA(i)                  xxxxxxxx     --------->ANAC58    <----------DOF2  --------->SPL7  --------->ANAC58                ---------->DOF2   ---------->DOF2    <---------ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <------ZmHOX2a(1) -----WRKY18(1)   <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)   accgagaaagcaacatgtttaccagagcttcagggatgaattcgaacgctctgcagcccgacgtaatcagagaagagctgaaatcgctagaggaaagagg  4041300                 --------->At4g35610             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            --------->CCA1(2)   --------->GLK1(1)           <---------ARR11(3)   <---------GLK1(1)           --------->ARR14(2)  --------->ARR14(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                <---------HSFC1(2)           <---------ARR14(2)  <---------ARR14(2)                            <---------At4g35610           --------->ARR11(1)  --------->ARR11(3)                     <----------ID1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      <xxxxxxxxxxxxxxxxsmallRNA(i)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    <------NtERF2  --------->At4g35610         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  <---------ANAC46<xxxxxxxxxxxxxxxxsmallRNA(i)         ----------->ARR10  <---------TOE2(3)           <-----------HVH21    --------->HSFC1(2)  <-----------HVH21   <---------WOX13(1)              <xxxxxxxxxxxxxxxxsmallRNA(i)     xxxxxxxxxxxxxx <---------bZIP60(1)--------->ATHB12                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <xxxxx <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->ZAT2   xxxxxxx xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ZAT2 --------- xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <xxxxxxxxxxxxxxxxsmallRNA(i) --------->At4g35610 <xxx xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <xxxxxxxxxxxxxxxxsmallRNA(s) --------->HSFB2a(1)xxxxx xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->MYB46(3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxx -------DEAR3(1) <---------At4g35610       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------At4g35610 xxxxxxxxxxxxxxx>smallRNA(fl3)<------ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(i) ------->TEIL  xxxxxxxxxxx   gcgatgtcaagtagatatgagctgattgatgaggatatcgaaactgagtatgagccagagtcatggcgcaaggagacgaagctgctgaacaaacccgacg  4041400                                                                                         <--------P                                                                                        xxxxxxxxxxxxx                                                                                        <-------GAMYB                                                                                        xxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                  <---------At4g35610                                                                                  ----------->RAV1(2)                                                                                  xxxxxxxxxxxxxxxxxxx                                                             --------->LBD16      --------->At4g35610                                                          xxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxx                                                         --------->ARR14(2)       xxxxxxxxxxxxxxxxxxx             <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------ARR14(2)       <---------ZAT2    <            ----------->GT1                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <      --------->ALFIN1 <---------ARR11(3)       <---------SPL7<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <-- xxxxxxxxx>smallRNA(fl3)<-------TEIL         <---------LBD16<---------ANAC58     <xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxsmallRNA(fl3)                  --------->LBD16<---------ANAC58    <-----------RAV1(2) < xxxxxxxxxxxxxxxx>smallRNA(fl3)--------->At4g35610      <---------GLK1(1)<----------DOF2xxxxxxxxxxxxx -->HVH21  <------ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxx>smallRNA(i)< xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------WOX13(1)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->ZAT2 <xxx xxxxxxxxxxxxxxxx>smallRNA(se3)<---------At4g35610  <---------LBD16    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) x>smallRNA(fl3)      <---------GLK1(2)     <---------HSFB2a(2)        xxxxxxxxxxxxxxxx>smallRNA(i)<x xxxxxxxxxx>smallRNA(si3) <----------DOF2   --------->HSFB2a(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   aggttacagtggaggagtatatcaggttctttgagatgaatgacttctggggaacgcggtatccgtgctatgagactttagcccagctggggttactgga  4041500            xxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->GLK1(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------At4g35610      <xxxxxxxxxxxxxxxxxsmallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <-------TEIL  --------->ALFIN1 ------->PIF5 <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           xxxxxxxxxxxxxxxx>smallRNA(i) <-------PIF5     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxx>smallRNA(se3)                     <---------ANAC58 xxxxxxxx>smallRNA(si3)                     <---------ANAC58                                  xxxxxxx xxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               --------- xxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      --------- xxxxx>smallRNA(fl3)       <---------At4g35610                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxx>smallRNA(le3)   <-----------HVH21 <---------CCA1(2)<---------At4g35610        <---------ANAC58 xxxxxxxxxx>smallRNA(se3)  ----------->RAV1(2)         <---------At4g35610         --------->GLK1(2) x>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC46            xxxxxxxxxxxxxxxx>smallRNA(i) ---------ANAC58<---------HSFC1(1)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxx ---------ANAC46--------->HSFC1(1)<xxxxxxxxxxxxxxxxsmallRNA(s)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----ZmHOX2a(1) --------->HSFB2a(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx xxsmallRNA(se3)<---------HSFB2a(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------ANAC58<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->SPL7<------ZmHOX2a(1) <---------ANAC58 xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(i)--------->At4g35610     <---------MYB52(1) <------ZmHOX2a(1)     ---------   ggacgtgcagcatctgttcgagaagtgtcatctggagacactcatgtcttacccttacgctgcttataaggaggagacaatcgagtttctttccacgctg  4041600  Previous    Next  AGI:  At4g06735.1    Description:  transposable element gene Range:  from: 4040106    to: 4040696    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g06736.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 4041127    to: 4043091    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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