Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <---------bZIP60(1)                                                 <---------GLK1(1)                                                 --------->bZIP60(1)                 --------->AtMYB61            <---------YAB1               xxxxxxxxxxxxxxxx>smallRNA(i) --------->YAB1   --------->ARR14(2)                      --------->ICU4   <---------ARR14(2)                      <---------YAB1   <---------ZAT14     --------->LBD16   --------->YAB1              <---------ARR14(2) ->GT1  <-------GAMYB <---------LBD16   <---------YAB1     <------ZmHOX2a(1) >GT1  <-----------RAV1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->ARR14(2)             x   ttgagtattctgttgcagacctctccagggagaacgctgagtatgatgatgatatcagagaggattatgcagaccctctctatagttcattttcttcttg  4039700                                      <---------O2                                      --------->O2           <---------YAB1                                      <---------TGA1a     <---------YAB1                                   <---------ZAT18      <---------ICU4                                   --------->ZAT18     <---------YAB1               <---------ANAC58                        <----------DOF2       <------ZmHOX2a(1)                     <---------ANAC58                        ========================bZIP_DOF--------->YAB1           <----------DOF2              --------->ANAC58   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <-----------GT1              --------->ANAC58   --------->At4g35610   --------->ICU4     --------->ICU4---------->ID1           --------->WRKY18(1)   --------->ZAT2        <---------ATHB12 --------->AHL20(2)        <------ZmHOX2a(1)   <-----------GT1<xxxxxxxxxxxxxxxxsmallRNA(s)--------->AHL20(2)       -----    xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ICU4  <---------YAB1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->TGA1a <---------TOE1(2)<---------AHL20(2)  --------->ICU4   ataagtgtgaggagtcaagctagagactttaaacaagctcacttgggaggaagtcccatgattatccttgtaaataatttttactttcttgtcatttttg  4039800                               ---------->DOF2                        <---------LBD16                 --------->ICU4           <---------ANAC46<------ZmHOX2a(1)       ----------->GT1        <---------ZAT14           <---------YAB1 ----------->GT1         <------NtERF2         --------->ZAT6            <--       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->REM1(2)          <-----------GT1             <-- ---->ATHB12      <---------MYB46(3)    <---------ANAC55(2)        <----------DOF2  <---------ANAC46   atttgttttagttgtgtttgtggttctcaggaaaaaagagaaacgtgaaggcagagtaaaaattcaaaacttttactctactgatggcctatagatcgag  4039900                                                                             --------->At4g35610                                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                          <---------At4g35610                                                                          --------->ZAT2                                                                          --------->At4g35610                                                                      ------->GAMYB                                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                          <-----------GT1--------->GLK1(2)                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                     <---------ICU4 ------>MYB46(1)                                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    <---------YAB1  ------>MYB83 <xxxxxxxxxxxxxxxxxxx                                                  --------->YAB1   --------->MYB52(1)                                             --------->AHL20(2)    ----------->RAV1(1)                                     <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <---------ARR14(2)    <---------ICU4  --------->AtMYB61 -------ZAT14               --------->ARR11(3)   <---------ATHB12--------->MYB46(3) -----TEIL  <---------YAB1  --------->GLK1(2)<---------AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(i)   tacattggtcgagtatgagtgatgttttaaaatctggatttttttttttaaatcatcattttactcgaccaacagaagctgcagagtcttacaaagagtt  4040000                             <---------TOE1(2)                            ------>ZmHOX2a(1)                          ----------->RAV1(2)                                                     ---                       --------->GLK1(1)                                                          <xx                       <---------GLK1(1)                                                         ----                      --------->ARR14(2)                                                      -------                   --------->LBD16                                                         --------->AtMYB61                  <---------ANAC58                                                         <---------ALFIN1                  <---------ANAC58                                                        --------->MYB46(3)                  --------->ANAC55(2)                                                    ------>MYB46(1)                  <---------ANAC55(2)                                                    ------>MYB83                  <---------LBD16                                                       --------->ANAC46                 <---------LBD16             --------->ZAT14                           --------->MYB46(3)              <------------CBF           --------->ZAT6                              --------->PCF2            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------ZAT14               --------->ARR14(2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->ZAT18               <---------ARR14(2)        <---------HSFB2a(2) --------->LBD16  <---------ZAT14     <----------ID1 --------->At4g35610        --------->HSFB2a(2)<---------LBD16XXXXXXXXXXXXXXXXXXX>MIR157D --------->ANAC58xxxxxxxxxxxxxxx      xxxxxxxxxxxxxxxx>smallRNA(i)       XXXXXXXXXXXXXXXXXXXX>MIR157A-C         <---------At4g35610   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------At5g28300    ---------->DOF2 --------->MYB52(1)---- xxxxsmallRNA(se3)<---------ANAC46     <-----------GT1--------->ZAT14 --------->ANAC58--------->DEAR3(2)   tatcaagtttacagaagattgcgggatttcctgggttttttttacagtaaacagagagcacagaagaaagacaagaaaacacagcggaacccaccactga  4040100                                                             --------->AtLEC2                                                             --------->ANAC55(1)                                                             --------->ANAC58                                                             --------->ANAC58                                                      <---------ARR11(3)                                                      --------->ARR14(2)                                                 ------>MYB46(1)                                                 ------>MYB83--------->ANAC46                                                <---------ALFIN1        ------>ZmHOX2a(1)                      --------->MYB46(3)      *TSS                                     <---------MYB55(2) --->NtERF2                                   --------->ANAC58 xxxxxxxxxxxxxxsmallRNA(s)                    --------->ANAC58     ------->GAMYB              <xxxxxx ----->ANAC58                     <---------GLK1(2)  xxxxxxxxxxxxxxxx>smallRNA(i)           <-------- ---->HVH21     <---------At4g35610      --------->ZAT14------>ZmHOX2a(2)                ------>ZmHOX2a(1) x>smallRNA(i)  --------->At4g35610      <---------REM1(2) <---------ALFIN1         xxxxxxxxxxxxxxxx>smallRNA(i) ----->ANAC58---------->DOF2<-----------------------TaNAC69(2)   -------->P       <---------GLK1(1)   cgcccatgtcctccatgaagcagaccaagagacatggaatctcttcacacccactcgatctccacgcaaccccatcttcactcgatttctcctccatcac  4040200                                                                   ------->GAMYB                                                                  --------->MYB46(3)                                                                  <---------MYB111(2)                                                                  <---------MYB52(2)      ---------->DOF2                                                                  <---------MYB55(2)   ----------->RAV1(1)                                                                 ------>MYB83          --------->RAP2.6(2)                                                                 ------>MYB46(1)      <----------ID1                                                                ----------->RAV1(1) --------->ANAC58                          <---------ATHB12                 --------->MYB46(3)       --------->ANAC58   <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                   <---------ICU4         ------>ZmHOX2a(1)  --------------------->WRI1                          --------->YAB1        --------->TOE2(3) ------- xxxxxxxxxxxxxxxxxsmallRNA(i2)                  <---------DAG2 --------->AtMYB61    --------->ANAC46 ---HVH21     ------>ZmHOX2a(1)             ------>ZmHOX2a(1) --------->MYB46(3)  ---------->DOF2  xx   tcgaccttgttttctcctccataacccaataaactcgagcccattcctccccttattcatcaccaccaacaaacccatcctcatcaaagccacaaagaac  4040300                     <---------ZAT2                     --------->At4g35610                     <---------At4g35610                     --------->ZAT2                 -------->ZAP1                                                                      -               <---------WRKY18(1)                                                                  -              --------->WRKY38(1)                                                                   -              ----------->HVH21                                                                     -              --------->WRKY12                                                                    <--          <---------ALFIN1               --------->ANAC46                                      ------       <-----------GT1       <---------MYB52(1)--------->AtMYB61                              ------- -->ARR11(3)--------->O2    <---------SPL7    --------->MYB46(3)                            <-------- xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <<<<<<<<<TAC1                              <xxxxxxxxxxxxxxxx   tcgacctcttcaccacttgaccgagctccccgttcgcataaacactcgaccatcgcttctctctcatctatccagtcaaaaaatcactcgacctcgcctc  4040400                                                                                                 ----                                                                                                -----     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                        <----   <-----------GT1                                                                             ------  --------->ZAT14                                                                              ------ -------->bZIP60(2)                            --------->ZAT14        ------->TEIL   --------->ANAC46 -------->O2                                   <---------ZAT14        --------->ARR14(2)       ------ -------->ANAC46   --------->At4g35610         <---------REM1(2)      <---------ARR14(2) ---------->DOF2 -------->TGA1a    <---------At4g35610       --------->ANAC46      --------->ANAC58  --------->ANAC55(2) -------ALFIN1 <-----------HVH21           --------->AtMYB61       --------->ANAC58  --------->ANAC58 >NtERF2      --------->bZIP60(2)          --------->ZAT6          --------->ANAC46  --------->ANAC55(1) -->DEAR3(1)  --------->ANAC46            --------->MYB46(3)  <---------At4g35610    --------->ANAC58 -ATERF1(1) <---------ALFIN1         xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    --------->ANAC46   <------ xxxxxxxsmallRNA(fl3)            --------->DOF5.7(2)          --------->At4g35610 <---------REM1(2) <   ccacttcaccatctccacatcagctcttgttcttcgtttactcgaccactacacagccttctctagctcacgaatccactcgacttcacgcaagagcgcc  4040500          --------->DEAR3(1)          <---------ALFIN1         <---------MYB55(2)                                 --------->LBD16         --------->MYB46(3)                                 ------>NtERF2       <---------ALFIN1                                    --------->DEAR3(1)       --------->ANAC46                                    --------->ANAC58 -->NtERF2--------->AtMYB61                       <<<<<<<<<TAC1 ---->DEAR3(1)                    --------->DEAR3(1)       --------->ANAC58 -----ALFIN1                    <---------At5g28300     --------->AtMYB61 --->RAP2.3(1)                 <-----------GT1    --------->ANAC46             --------->ZAT6 --->ATERF1(1)                --------->MYB46(3)<---------ALFIN1         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --->DEAR4(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ANAC46    <---------ALFIN1 ---ATERF1(1)        <---------ATHB12        --------->MYB46(3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---------At4g35610--------->WOX13(1)   ------>ZmHOX2a(1)<---------ATERF1(1)--------->REM1(1)   tccgcttctccaccaccgattcaatcactcgaatcaccgctcctctaacaacactcgacctccgccatcaattcgccttcaacacttctcgctcaaaatc  4040600  Previous    Next  AGI:  At4g06734.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 8.0e-279 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 4036979    to: 4039696    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g06735.1    Description:  transposable element gene Range:  from: 4040106    to: 4040696    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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