Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        ------>ZmHOX2a(2)                                                                                      <xxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    --------->ARR11(3)                                                                             --------->ANAC58                                                                             --------->ANAC58                                                                             <---------O2                                                                             --------->TGA1a                                                                             <---------TGA1a                                                                             <---------bZIP60(1)                                                                             --------->bZIP60(2)                                                                             --------->bZIP60(1)                                                                             <---------ANAC55(2)                                                                             --------->O2                                                                             --------->ANAC46                                                                             --------->ANAC55(1)                                                                             --------->ANAC55(2)                                                                      <---------KAN4(2)      xxxxxxxx                                                                      --------->GLK1(2)--------->TOE2(2)                                                              --------->CCA1(2)     <---------ARR11(3)                                                             --------->ARR11(3)   --------->ICU4                                                             <---------AHL20(1)   <---------YAB1                                                             --------->AHL20(1)--------->TGA2(2)                                                            --------->AHL20(2)<-----------TGA1  <xxxx ------->STY1(1)       --------->AHL20(2)               --------->AHL20(2)xxxxxxxxxxxxxxxx>smallRNA(s) --------STY1(1)   ----------->GT1                 <------ZmHOX2a(1)  <-----------ARR10--------->TOE1(2) --ARR14(2) --------->MYB52(1)                    ----------->GT1     <---------ARR14(2)  ----------- ->ARR14(2)<---------STY1(1)                     <---------TOE2(3)    --------->ARR14(2)------>ZmHOX2a(1)   cctagggaaaaccctaaggggcagtttatataagcgagaaatgaaacaaataaggaaactaaatatatagggaatcttcacgtcatgatcctgcgaccga  4033300                                                                             <---------ATERF1(1)                                                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                          ------>ZmHOX2a(2)                 <---------ARR14(2)   <xxx   --------->ATHB12                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<------NtERF2      ---- <-----------HVH21                    <---------ZAT6                       xxxxxxxxxxxxxxxx>smallRNA(s) xxsmallRNA(s)                     ------>ZmHOX2a(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <--- xsmallRNA(s)                      ==============HOX2a_HOX2a        <----------DOF2         <-------- xxxxxxxx>smallRNA(i)        --------->At4g35610 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <-------- xxxxxxxxxxxxsmallRNA(s)     <---------At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------YAB1< >HVH21      ----------->HVH21    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------GLK1(1)<--------   atgtgtcattggcatttgacgggctgaaatgagcttcctagtgatcgagtatgtcattgatcaaactgggctttaggggctccgtcttgcgattgagtga  4033400      <xxxxxxxxxxxxxxxxsmallRNA(s)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           ----------->GT1     <---------ZAT18                                                  <---------MYB46(3)     <---------ZAT14                                                 <---------AtMYB61     --------->ZAT14          -------->P                         ------>ZmHOX2a(2)   <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->ALFIN1     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ANAC46           ------->GAMYB<---------ANAC46<---------DEAR3(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ------>ZmHOX2a(2) <---------AtMYB61 xxxxxxxxxxxxxxsmallRNA(si3)--------->AtMYB61             --------->ALFIN1 ----->At4g35610            <---------MYB55(2)          <---------ANAC46 ------At4g35610            <---------MYB52(2)          <---------bZIP60(2)      <---------GLK1(2) -ANAC46                    <---------MYB111(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -ANAC58                    --------->MYB46(3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------TEIL                <---------MYB111(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -ANAC58         --------->ATHB12   ----------->HVH21   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <-----   gatgcagtgaagtcgagattgaatggtccaacaaccctgtgatcgagtggatgtcatgaggtggtgatcgagtggtttcttcggcttctcttctcttctt  4033500                     <---------ZAT14                     --------->ZAT14                     --------->ZAT18                     <---------ZAT18                               <---------ANAC46         ---------                  <---------ANAC58                                 <---------ANAC58    --------->ATHB12                  <---------ANAC46                                 ----------->GT1   --------->HSFB2a(2)                  <---------ANAC58<---------ARR14(2)      <---------ARR14(2)     <---------GLK1(2)        xxxxxxxxxxxxxxxx>smallRNA(i) <------MYB83         --------->ARR14(2)   --------->LBD16        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <XXXXXXXXXXXXXXXXXXXXXMIR2935   ------>NtERF2<--------        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)==============HOX2a_HOX2a        <---------LBD16<--------      <---------ANAC58            --------->ARR14(2)    <---------MYB46(3)  ------>ZmHOX2a(1)      <---------ANAC58        <---------At4g35610  ------>ZmHOX2a(2)  <---------MYB46(3)    <--------   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ------>ZmHOX2a(1)      <---------ANAC58  <---------HSFB2a(2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <------MYB46(1)   --------->ALFIN1xxxxxxxxxxxxxxxx>smallRNA(s) -----DOF2     <--------P     --------->At4g35610  ================================HOX2a_HOX2a     xx   tgttcttagcttgtctggttgagtgcagaatgagcagataggtttcctggtgatcgagtggttccgatggggtgattcctccggcttctcgattgagtga  4033600                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <-------GAMYB                <---------LBD16            <----------DOF2       <---------ANAC46       <---------ANAC58                                    <---------ARR14(2)      xxxxxxxxxxxxxxxx>smallRNA(i)                        <------ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->LBD16   --------->ZAT2 --------->LBD16           <-----------HVH21   --------->At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ARR14(2)   <---------ZAT2<---------LBD16           ----------->HVH21   <---------At4g35610<--------P          xxxxxxxxxxxxxxxx>smallRNA(s) -->GT1<---------ANAC58               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               <------NtERF2 -ANAC46   <---------ANAC58       --------->ATHB12    <---------TOE1(1)               <-----------HVH21 -ANAC58   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       <------NtERF2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -ANAC58   <---------ANAC58    ----------->GT1  <------NtERF2            <----------DOF2--------->ATHB12 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)----------------------->TaNAC69(2)<---------ZAT18 <xxxxxxxxxxxxxxx   aactgagctgcttgcttctccggggttgcgatagagtgatttgccctggcagggctccgaggatgcgatagagtacttttgttgaaggcgtcattgggca  4033700                                                                                  ------------>CBF                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                                <-------PIF5                                                                                <-------PIF4                                                                                ------->PIF5                                                                                ------->MYC2                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                <-------MYC2                                                                                <-------MYC4                                                                                <-------MYC3                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                   --------->ARR14(2)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   <---------ARR14(2)    ------>ZmHOX2a(1)                                                                  ------>MYB46(1)--------->ANAC46                                                                  ------>MYB83  ------->MYC3                                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                ------->GAMYB   ------->PIF4                                                   --------->MYB52(1)      --------->AtLEC2                                                   ------->TEIL xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  <-----------GT1             ---------->DOF2 --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <XXXXXXXXXXXXXXXXXXXXMIR415 --------->ANAC58       --------->ANAC58------->TEIL   --------->bZIP60(1)               ---------->DOF2        --------->MYB46(3)xxxxxxxxxxxxxxxxxxxxxxx *TSS<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->YAB1 xxxxxxxxsmallRNA(si3)------>ZmHOX2a(1)--------->ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <x   ttctgacttcatgttctgtttttcctctgtttaaactccaaaagcatccaaagtacctgaaaacaaccaaatatgccatgcacatgcaatcctaatgcaa  4033800                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                       ----------->GT1                                                                      --------->ALFIN1                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  ---------->DOF2              ------           ----------->GT1                                     --------->YAB1      ------->TEIL------     ------>ZmHOX2a(1)                   --------->At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xsmallRNA(i2)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) >smallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)------ xxxxxxxxxxxxxxxsmallRNA(i)        ------>ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   <--------   aatcgtcctaagtatgtaaaacacactaaaacgactcctaatgagatgaaatgtggatgaaacaatgacaaagtggtgaagaatgaatgcctaaatcatg  4033900                                                                                --------->TOE1(3)                                                                                --------->TOE2(3)                                                                               ----------->GT1                                                                               <----------ID1                                                                              <---------TOE2(3)                                                                     ---------->DOF2                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                            --------->YAB1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                      --------->ANAC46     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                      --------->ANAC58     --------->DOF5.7(2) --->AtLEC2                         --------->YAB1    --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --->ANAC58                         ----------->GT1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <xxx --->ANAC58              <------MYB83  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------DOF5.7(2)----- -ATHB12                 <------MYB46(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)---------->DOF2   caaattatagacatatcagtagtaagttggtcgagtaattgtaaaaactaagaaacaggcaatgagaacgattaagcgataacgataaaacagagaaata  4034000                     --------->ALFIN1                   <------ZmHOX2a(1)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <---------TOE2(3)                                                <---------GLK1(1)               xxxxxxxxxxxxxxxx>smallRNA(s)                                    --------->ANAC58             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            --------->ANAC58           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           --------->ANAC58          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             --------->ANAC58         xxxxxxxxxxxxxxxx>smallRNA(i)                                     --------->WOX13(1)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                         --------->ANAC58         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       --------->MYB52(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <---------MYB52(2)       xxxxxxxxxxxxxxxx>smallRNA(s)                                <---------MYB46(2)               <       xxxxxxxxxxxxxxxx>smallRNA(i)                          ----------->GT1<---------ATHB12 <xxxxxxx     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->ARR14(2)--------->ANAC58      xxxxxxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <---------ARR14(2)--------->ANAC46  <---------ETT(2) ---->AHL20(2) ------>ZmHOX2a(1)               ------>ZmHOX2a(1)   --------->MYB46(3)  --------->LBD16   atatagacgagaaattcctaaggatggggtaatcgaatagagtggtatcctagcctatccgaatggttaactaacgcaatcaagctatccgtagacaaca  4034100                                        --------->ANAC58                                        --------->ANAC46                                        --------->ANAC58                                        <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     ------>ZmHOX2a(1)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    --------->TOE2(3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 --------->ARR14(2)                        --------->GLK1(2)                                <---------GLK1(1)                         <---------GLK1(2)                             <xxxxxxxxxxxxxxxxsmallRNA(i)               xxxxxxxxxxxxxxxx>smallRNA(i)                         ----------->HVH21                              ------->GAMYB                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          --------->ANAC46                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->MYB52(1)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------DOF5.7(2)                       --------->ANAC55(2)                       --------------->AGL15                 <-----------GT1--------->GLK1(1)               <-----------------AGL1                <xxxxxxxxxxxxxxxxsmallRNA(i)                    <-----------------AGL2           =================================HOX2a_HOX2a         ----------------->AG           <------ZmHOX2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------------AGL15        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <-----------------AGL3     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)     ----------->RAV1(1)--------->LBD16<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->MYB46(3) <---------ANAC55(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             ------- -------TEIL <xxxxxxxxxxxxxxxxsmallRNA(i)  ---------->DOF2      ----------------->AGL3  --------->ANAC58 xxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxsmallRNA(i)     ----------------->AGL1  --------->ANAC58 xxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ----------------->AGL2  --------->ANAC46   ggttcaacaacagatcaattcactcccgtgatagaaatcctcaagcaaagctagcccagactaattcccattaacggaatctaactatgcaagcaataag  4034200  Previous    Next  AGI:  At4g06728.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06724.1) Range:  from: 4033354    to: 4033701    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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