Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                              <------NtERF2                                                                                              -------                                                     --------->ANAC58                        xxxxxxxx                                                     --------->ANAC58                        <-------                                                     --------->ANAC46                        --------                                           <---------ANAC58                                 <--------                                           <---------ANAC58                                 <-------- --------->AtLEC2                        <-----------GT1                                    --------- --------->ANAC58                      <----------DOF2        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC58               --------->TOE2(3)  ---------->DOF2            <------ZmHOX2a(1)<xxxxx   aacatgcaaattatagacatatcaactctcccaaacttagtctttacttgccctcaagcaaataagaagacatagttgaaggagaggtttgaaggcgggg  4018000       ---------->DOF2      --------->AtMYB61      <xxxxxxxxxxxxxxxxsmallRNA(i)    xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxsmallRNA(i) ->NtERF2                                                                                          <- -->ATERF1(1)                                    <---------MYB46(3)                                <- xxxxxxxxxxxxxxx>smallRNA(fl3)                  <--------P                                         <- --ATERF1(1)                                 --------->MYB111(1)                         --------->DOF5.7(2) ->LBD16                                     --------->MYB111(2)     <---------WOX13(1)  <---------MYB52(1) -ANAC46                    <---------AHL20(2)<------MYB83         --------->ATHB12     --------->TOE2(3) -DEAR3(1)            <---------At4g35610   <--------P     ----------->GT1   <-----------GT1<xxxxxxxx >ALFIN1       <---------YAB1   xxxxxxxxxxxxxxxx>smallRNA(i)      <---------YAB1        --------->TOE1(3) xxxxxxxxxxxsmallRNA(i)     --------->AHL20(2)<------MYB46(1)   --------->CCA1(2)  <xxxxxxxxxxxxxxxxx   actcagaaccaaagcatatgatagagctaataaaatcaatgtccaagttggtagttctaagatgtgatatgattgaattttactcaaaaacgttagccat  4018100                                       <-------MYC3                                       ------->MYC2                                       ------->MYC3                                       <-------MYC2      ------>MYB83           <---------HSFB2a(2)            --------->WOX13(1)      <---------ALFIN1     ------>MYB46(1)        <---------HSFC1(1)          <---------ATHB12         ------>MYB46(1)      --------->WOX13(1)      --------->HSFB2a(2)        --------->WOX13(1)       --------->AtMYB61     --------->AtMYB61        --------->HSFC1(1)      <---------YAB1             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------LBD16------- --------ANAC58                  <---------MYB59     -------->P              --------->ARR14(2) --------ANAC46   XXXXXXXXXXXXXXXXXXXXX>MIR833-5P   <-----------GT1       <---------ICU4      ------- --------ANAC58   <---------CCA1(2)------>MYB83  --------->ARR14(2)    --------->YAB1----------->GT1 xxxxxxxxxxxxxsmallRNA(se3)--------->ANAC46<----------DOF2            <-------TEIL  <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxsmallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<----------DOF2<---------ARR14(2)  ----   gccttgttatcaatcaatccgtctcttatactcgacctacacatgctttcaaatctaccaatccctttaacattcatcagttctggaacgtgaatcaagc  4018200                                                                                                  <--                                                                                       <xxxxxxxxxxxxx                                                                                     ------>ZmHOX2a(2)                                                                        <---------ANAC55(2)     <----                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------GLK1(1)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <------ZmHOX2a(2)                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         --------->GLK1(1)                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       --------->ARR11(3)                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->MYB52(1)  ------                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       --------->ARR14(2)                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----------->HVH21    <-----                                 <---------At4g35610            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             --------->ALFIN1                  --------->ARR14(2)  <---------ARR14(2)      <---------YAB1         <---------REM1(1)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->TOE2(3)    <---------TOE1(3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     -------- -->ANAC58                --------->DAG2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<-----------RAV1(2)----- -->ANAC58   <-----------------AG--------->At4g35610--------->PCF5      --------->ANAC55(2)  xxxxxxxx ----->CCA1(2)            <---------TOE2(3) ---------->DOF2--------->HSFB2a(2)     <---------ARR11(3)   tatgcatcatcaataaactcatttggctaaggtgaagctcaagagacaaagatggtcccttacagaataggcttaagtaacaggggatctctcaagaatg  4018300                                     <---------YAB1                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             <xxxxxxxxxxxxxxxxsmallRNA(i)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          <xxxxxxxxxxxxxxxxsmallRNA(i)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         <xxxxxxxxxxxxxxxxsmallRNA(i)                         xxxxxxxxxxxxxxxx>smallRNA(i)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                        xxxxxxxxxxxxxxxx>smallRNA(s)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <--------P <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       <xxxxxxxxxxxxxxxxsmallRNA(i)                      xxxxxxxxxxxxxxxx>smallRNA(i)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     xxxxxxxxxxxxxxxx>smallRNA(i)                     <xxxxxxxxxxxxxxxxsmallRNA(i)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <xxxxxxxxxxxxxxxxsmallRNA(i)                   xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <xxxxxxxxxxxxxxxxsmallRNA(s)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            *TSS              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     ------>ZmHOX2a(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <------ZmHOX2a(2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ARR11(3)    <----------DOF2xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) -------WOX13(1)  ---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(i) -------->P xxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------ARR14(2) ----ATHB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->ARR14(2)            --------->ARR11(3) --->ICU4  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      --------->ARR11(3)   ------------>CBF         <- ->YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(i)       <---------ARR11(3) ---->ATHB12<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->CCA1(2)       --------->YAB1   --------->YAB1 xxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->LBD16 xxxxxxxxxxxxxxxxxxx   attgagctttagtagaatgctaaaggtaagtcccaagttatgcatacagagataagatcccatctacccagagtataacaatgaaggtctaatggtaatc  4018400                                               ------->TEIL                                            <---------YAB1                        <-----------GT1   --------->YAB1          <---------------AGL15          <---------ATHB12              --------->WOX13(1)     <xxxxxx         ------------>CBF --------->ZAT6 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               xxxxxxxx         ----------------->AGL3   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------YAB1        --------->ZAT6 --------ALFIN1    <---------ARR11(3)--------->ZAT14               <---------CCA1(2)      <xxxxxxxxxx xxxx>smallRNA(si3)--------->ARR11(3)<---------ZAT18        <----------DOF2     <----------DOF2  <---   ccaactccagtcccaatacaagaacttaactctaccctttgcactcatgaatctttcaaactctttttcatatcattcatttcttttctcttaactctag  4018500            <---------ALFIN1           --------->ZAT14    <----------DOF2  --------->HSFC1(2)                   <---------GLK1(1)           <---------AHL20(2)  <---------HSFC1(2)            <---------ARR14(2)       <---------ARR14(2) --------->GLK1(2)         ------>MYB46(1)            <---------TOE1(3) xxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ARR14(2)    --------->DAG2                      <---------- xxxxxxxx>smallRNA(i)      ------>MYB83--------->GLK1(1) --------->ARR14(2)      ---------->DOF2 xxxxxxxxxxxxxsmallRNA(si3)--------->MYB52(1)         <---------TOE2(3)<---------ICU4  <----------DOF2 ---ZmHOX2a(1)          --------->ANAC46   <----------DOF2   ------>ZmHOX2a(1)   --------->MYB52(1)   gagaagctttctcaacactctgatacacctagcggatttggatttctttaacaaataaggttcctgtttttaatctttaaaaccaaaggctttaaccctt  4018600               ------->TEIL              --------->ARR14(2)              <---------ARR11(3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        <---------GLK1(1)              <---------ARR14(2)                            <-----------GT1           <---------HSFB2a(2)              <---------GLK1(2)                         <---------RVE1(1)             --------->HSFB2a(2)            --------->ANAC58                           <---------ARR11(3)             --------->HSFC1(1)            --------->ANAC58    <-----------GT1        <---------GLK1(2)   <---------ANAC58     <---------At4g35610     <----------DOF2           --------->ARR11(3)  <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <----------DOF2            <---------At4g35610       < <----------DOF2 --------->TOE2(3)            --------->TOE2(3)           --------->At4g35610 <------ -GT1--------->At4g35610<----------DOF2       --------->TOE1(3)       <----------DOF2 ------>ZmHOX2a(1)   cttctttagctaacaagaacctcattcttttctttaacattctcaaaacctttactagattttttccaacttctttagcttacttctcctagaattcttt  4018700                                                                           ------>ZmHOX2a(1)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                 <---------ALFIN1                                                                --------->RAP2.3(3)                                                                --------->DEAR3(1)                                                              --------->PCF2                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       --------->CCA1(2)<xxxxxxxxxxxxxxxxsmallRNA(i)                                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                               ------>MYB83   <---------ZAT18                                               -------->P    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               ------>MYB46(1)--------->ZAT18                                   <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ------>ZmHOX2a(1)    <----------DOF2      --------->ANAC58 --------->MYB46(3)            -------    --------->TOE2(3)    <---------DAG2        --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----------DOF2      <-----------GT1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->LBD16 ----DOF2      <---------ATHB12<----------DOF2 >>>>>>>>>MYB98<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <   ccctttccttatcaacaatgaattcacccttttcttttaaacacatcccaacccatgatataagcgcccacctagtcctatccagtccgaaaaatgtgaa  4018800                                     ------>MYB46(1)                                   <---------MYB46(2)                                   <---------MYB59                                   <---------MYB111(1)                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 ------->TEIL                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           <---------MYB52(1)                          <xxxxxxxxxxxxxxxxsmallRNA(i)                         <---------MYB46(3)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            --------->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <---------ARR11(3) <<<<<<<ZML2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->YAB1                  --------->CCA1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ZAT6<---------ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -->ZAT18   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ------>MYB46(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------>MYB83  ------>MYB83 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ctagaactacatgagacactatctctgtcgttacgaacctaacactttctaccaagctctatcgaaataagacctcacaaacactcacaagtgatatagg  4018900  Previous    Next  AGI:  At4g06718.1    Description:  transposable element gene. pseudogene, expressed protein Range:  from: 4017245    to: 4018363    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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