Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                     --------->ARR14(2)        <-----                                                                     <---------ARR14(2)        <-----                                                                    <------ZmHOX2a(1)          ------      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           <------MYB83                <-----     -------->P                                                    <------MYB46(1)             <-----   --------->MYB46(3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---------->HVH21                                                ==================================== -------At4g35610                                                <--------P                    ------ ------>At4g35610                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------ZAT2                                                  <---------TOE2(2)             <xxxxxxxx ------>ZAT2                       ---------->DOF2        ------>ZmHOX2a(1)                <--------- ---->MYB46(3)                   <---------YAB1           <---------YAB1                  <---------bZIP60(1) -->MYB52(1)         <---------------AGL15               --------->TOE2(3)                --------->bZIP60(1)   agctgacaacccctcaaacaattccacttgaagtgatgaaaggaattgaagtgtctcatcctcataggtaggatagggatgagacatgagtgttgtcatg  3992400                                                                              --------->ANAC46                                                                   <---------ARR11(3)                                                                   --------->ARR11(3)                                                                   <---------ARR14(2)      --------->HSFC1(1)                                          <---------GLK1(1)      <---------HSFB2a(2)                                         <---------RVE1(1)      <---------HSFC1(1)                                          --------->GLK1(1)      --------->HSFB2a(2)                                        --------->ARR11(3) ----bZIP60(2)                                                   <---------ARR14(2)        <--------- ------RAV1(1)                                                   <---------ARR11(3)    --------->GLK1(1) --->O2                                                          --------->ARR14(2)    <---------GLK1(1) ----TGA1a                                               --------->LBD16     --------->LBD16 ----O2                                      --------->LBD16    <------ZmHOX2a(1)--------->MYB52(1) ====MYC_MYB         ------->TEIL            ------>NtERF2   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --->TGA1a      --------->At4g35610         --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(si3)              <---------LBD16  --------->ALFIN1----------------->AGL2 --HVH21        <---------At4g35610  <---------MYB59   <---------LBD16      <-----------------AGL1   tggcatttctcgaacaagagctgaacgtcttccaagatgcctaactccgccattgtctccgggtgaggatatcttgttccccaaaacggatttcttttga  3992500                             ---------->ID1                        --------->At4g35610                           <---------HSFB2a(2)                        <---------ZAT2                        --------->ARR14(2)                        <---------At4g35610                   <---------ARR14(2)                      <xxxxxxxxxxxxxxxxsmallRNA(s)          --------->LBD16                      <---------WRKY12                     <---------ANAC58                      <-----------RAV1(2)                  <---------ANAC58                    <xxxxxxxxxxxxxxxxsmallRNA(i)           <---------ANAC46        --------->At4g35610                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   <---------LBD16     ------->TEIL                    <-----------HVH21                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                --------->LBD16              xxxxxxxxxxxxxxxx>smallRNA(s) <---------KAN4(2)                <---------LBD16      xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------------AtSPL8   <x <---------ANAC46--------->LBD16  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->HSFB2a(2)       <---- -DOF2         <---------LBD16    <----------DOF2  <---------AtMYB61 <---------LBD16     --------->At4g35610   gagccttgtagtagtctcccggggtcagcttgtcttctttcattagggacttggtggtcttgcgggtttgctctggaatgtactcagcatcatcttccat  3992600                           --------->ATHB12                          <---------MYB52(1)                         <-----------TGA1                                      <---------At4g35610                         --------->LBD16                                       --------->At4g35610                         <-----------HVH21                                  --------->ATERF1(1)                        --------->ANAC46                                   <---------ATERF1(1)                     <-----------GT1                                       ------>NtERF2                 <---------ICU4                                           <---------RAP2.6(2)                --------->ICU4                                            --------->ETT(2)           --------->At4g35610 <---------WRKY18(1)                  --------->ATHB12           <---------At4g35610--------->WRKY12                    <-----------HVH21                --      --------->WOX13(1)--------->ANAC55(2)                      ------>ZmHOX2a(1)                xxx xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----CCA1(2)   <---------YAB1--------->WRKY38(1)              ----------->RAV1(2)            ------>ZmHOX2a(1)   ctcttcatcaattagctcataattttccgtcattgacctcttccctctggctatctcttctcttctcctgtcattggcgactgctcgctctgtttcctcc  3992700                                                   --------->At4g35610                                                   <---------At4g35610                                                   <XXXXXXXXXXXXXXXXXXXXMIR172C/D                                                  <XXXXXXXXXXXXXXXXXXXXMIR172A/B                                                  <XXXXXXXXXXXXXXXXXXXXMIR172E                                                <-------TEIL                                       --                                        xxxxxxxxxxxxxxxx>smallRNA(i)                               <-                                       >>>>>>>>>>WRKY26                                            --                                       >>>>>>>>>>WRKY43                                         <----                                       <---------WRKY18(1)                                  ---------                                       >>>>>>>>>>WRKY38                                     <--------                                       >>>>>>>>>>WRKY11                                     ---------                                       >>>>>>>>>>WRKY6                                      <--------               <---------At4g35610    xxxxxxxxxxxxxxxx>smallRNA(i)             <xxxxxxxxxxxxxxxxxxxxx               ----------->RAV1(2)    --------->WRKY38(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->ARR14(2)            --------->WRKY12           --------->ZAT14    --------->ATHB12        <---------ARR14(2)            --------->WRKY45      <---------YAB1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------->DOF2 --------->At4g35610    <xxxxxxxxxxxxxxxxxxsmallRNA(si3)  <------NtERF2 xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<-   acaaatcgcctatactcatctgcttctctctctggcctagttgaccaagattcagcatcatcaacattgtagtcggcatccatagatgattcgtagctgt  3992800 ------->ZAT14 --------ZAT18 ------->ZAT18 -----ANAC46 >At4g35610                                                                    ---------->DOF2 -ZAT2       <---------At4g35610                                     ---------->DOF2 >ZAT2    *TSS                                                  <---------MYB52(2) -At4g35610  --------->At4g35610                              ------------------------>ANAC81 xxsmallRNA(se3)                                            XXXXXXXXXXXXXXXXXXXX>MIR851-3P x>smallRNA(s)                          ---------->DOF2   <---------------------WRI1 --------ZAT14                        <---------MYB52(2) <---------ZAT6  ------------>CBF      ------   gtgaactcatcttgaagctgaaatcgatttgaaactcacaactaaagctcagtaagttagtgagaaacaaacaaagacaatgaaagaaatgacttcccag  3992900                                     <------NtERF2                                 --------->O2                                 <---------O2                                 --------->ZAT2                            <---------ZAT2             <xxxxxxxxxxxxxxxxsmallRNA(s)                            --------->ZAT2           --------->ANAC58                         -------                            <---------At4g35610  --------->ANAC58                             <------      ------>ZmHOX2a(2)     --------->At4g35610  --------->ANAC58                             -------  <---------YAB1       ----------->HVH21 <------ZmHOX2a(2)      --------->CCA1(2)          <---------TOE2(3) --->LBD16       <---------YAB1<-----------RAV1(2)   --------->ANAC58  <--------P          <---------TOE1(2)   agttgtgatcgagtagaatttgatagtgacagctcaggtcgcgatcgagtgaagcaagcaaatgagagacagggttgcgatagagtagtttctgaggttc  3993000                           ---------->DOF2                    ----------->GT1                      --------->MYB46(3)               <---------ANAC46                 --------->ANAC58                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->YAB1  ------->GAMYB              <---------ZAT14          --------->MYB52(1)                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->ZAT14 -->ARR14(2)     --------->ANAC58       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            --------->YAB1 ---ARR14(2)  --------->ZAT2          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------ARR11(3) -->GLK1(2)   --------->At4g35610     xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)     --------->ARR11(3)   tgttttagtcaataacagctagcaacaacgaaagaattgagagcgtttttggtagtgaagtagagagataaacaagagagatgttttgaaatcacaagtg  3993100                                                                   <----------DOF2                                                                  <---------ANAC58                                                                  <---------ANAC58                                                              <-------GAMYB                                                             --------->ALFIN1                                                             <-----------RAV1(1)                       --------->ANAC55(2)                 <---------ANAC46                  <---------ZAT6                        <---------AtMYB61              --------->ANAC58                  ----------->HVH21                    <------ZmHOX2a(1)    --------->MYB52(1)    <--                ----------->GT1  <----------DOF2  --------->ALFIN1<---------ANAC46     --------->ANAC58     --------->DAG2    <---------ANAC55(2)     --------->ATHB12 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ---------->DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ALFIN1<---------SPL7        <---   atgaagaaaagtgaagagtagtgacacttatctccctttgcgatttgaatgagtggaggaggtgtgttgcttttaaacggacggatgggatgcaatgccc  3993200                                                                                 <---------YAB1                                                                             <---------ANAC46                                                                            <------NtERF2                                                                           ------>NtERF2                                                                          --------->ANAC58                                                                          --------->ANAC58                                                    <------ZmHOX2a(1)   =============================                                                <------NtERF2           --------->TGA1a                                               <---------DEAR3(2)       =============================                                              <---------RAP2.6(2)       --------->ANAC58             --------->O2                     <<<<<<<<<<AtTINY2         --------->ANAC58             <---------O2                     <---------At1g77200       <---------TGA1a          <---         <------NtERF2                        --------->ETT(2)          --------->ANAC55(2)     -----       --------->ETT(1)                       --------->ETT(1)          <---------ANAC55(2)     -----      --------->RAP2.6(3)                    --------->DDF1             =============================      --------->DDF1 ----------->GT1         --------->RAP2.6(3)    <-----------HVH21           <----    <---------bZIP60(1)                    <-----------RAV1(1)     --------->ANAC46            <-----    --------->bZIP60(1)<----------ID1  ===========================================bZIP_DOF    <------ <---------YAB1     <---------TOE2(3)  <---------DAG2              --------->ANAC58  ================ -------MYB52(1)    --------->DAG2     <----------DOF2             --------->ANAC58  ------>ZmHOX2a(2) ----GAMYB   ----------->GT1          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC46    <------   gttatgatgtcggcaacgtgataaggtgacaaaacatggtgctttatgtcggcaggatgggcttccttcaagtcacgcgccttgtgatcgagtatgggtt  3993300  Previous    Next  AGI:  At4g06712.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 3990942    to: 3992810    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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