Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <---------ANAC58                      <---------ANAC58                                                     ------>ZmHOX2a(2)                      <---------ANAC46                                                   <---------ARR11(3)                    --------->CCA1(2)                                                    --------->ARR11(3)                   <---------GLK1(2)                                              <---------ANAC46        <---------GLK1(2)                                                  <-----------HVH21        --------->ARR14(2)                                       --------->ANAC58 <---------ANAC58        <---------ARR14(2)<---------AtMYB61    <---------ZAT2    --------->ANAC58 <---------ANAC58   --------->MYB52(1)<-------TEIL <---------ANAC46           --------->CCA1(2)   <---------LBD16  ------->GAMYB---------->DOF2  <---------ANAC46   <---------GLK1(2)      --------->bZIP60(1) --------->MYB46(3)--------->ARR14(2)          <---------At4g35610 <---------ANAC58    ----------->ARR10 <---------MYB52(2)--------->ARR11(1)          --------->At4g35610 <---------ANAC58 <------NtERF2<--- --------->RAV1(1) <---------ARR14(2)     <----------DOF2   <----------ID1<---------bZIP60(1)    ----   acaacaaacagatttgttaaagattcgtgtggttttgtgtatacctttgagctgattctgaagagacaagcttgtgaggtcatggcgggatgatctgatt  3940300                        <---------At4g35610                ------>NtERF2             --------->At4g35610             <---------ZAT2             <---------At4g35610                                                        --------->GLK1(1)             --------->ZAT2                     <---------YAB1                       <---------TOE2(3)     --------->ZAT18    --------->At4g35610   ----------->GT1                    --------->At4g35610 ------AHL20(2)>>>>>>>>>AtERF-4         <------ZmHOX2a(1)                   --------->DAG2 ----->AHL20(2)>>>>>>>>>AtERF-3   ---------->DOF2                          ---------->DOF2   taaaaatcgcgctagagctgccagtaatctgagagagaaagaggaatatggtaattgaattgagagttttatatgcaaaaagcagttgagatttcaaact  3940400              --------->GLK1(2)              ------->TEIL           <---------YAB1                                    ------>MYB83         --------->YAB1                                      ------>MYB46(1)         <---------ICU4                                  -------->P--------->YAB1          --------->TOE2(3)        <---------ATHB12                              <---------ANAC58                     --------->TOE1(3) --------->ZAT18   ----------->HVH21             <----------DOF2<----------DOF2    ------>NtERF2 --------->At4g35610                  ---------->DOF2 <---------ANAC58  ------->TEIL   <---------ALFIN1   atgagcacaaatcatgaatctgtgacaacttgatcaaatgcaaagttgatacttttgcttaccagcctttcatgaacttcttcgatgccaaacccttaat  3940500                                                                   <---------ZAT6                                                           ---------->DOF2                                                        <------ZmHOX2a(2)                                                       --------->AGP1                                     --------->ARR11(3)--------->ARR14(2)                                     <---------ARR11(3)<---------ARR11(3)                               --------->YAB1       <---------HSFB2a(2)       ---------->DOF2     ---------->DOF2          --------->HSFB2a(2)                     ---------    --------->TOE2(3)  ----------->GT1<------ZmHOX2a(2)<---------ARR14(2)          ------->TEIL     <   gaacaaacttaaagtttgcagaaaatagttaaagcataagatcacaatccaattccagatccaaagctactgttcatttcacatgaatcttgaaatgaga  3940600                                                                                     --------->At4g35610                        <---------RAP2.6(3)                                          <---------At4g35610                        --------->LBD16                            ------>ZmHOX2a(2) --------->ZAT2                       --------->ETT(1)                           <------ZmHOX2a(2)  <---------ZAT2                       --------->LBD16                 ------>ZmHOX2a(2)            <---------ATERF1(1)        ------->GAMYB <---------LBD16             --------->HSFB2a(2)           ------->GAMYB      -------->P <-----------RAV1(1)           --------->ARR11(3)--------->ARR14(2) ------>NtERF2   <---------MYB52(2) <---------ANAC46     ---------->DOF2       <---------ARR14(2)<-----------RAV1(2) -->GT1--------->MYB46(3)<------NtERF2    --------->YAB1  <----------DOF2       ===================== ----------ID1 <----------DOF2 --------->At4g35610<---------HSFB2a(2)     --------->YAB1     --------   aaacgactaaccatcgtctttgttgccggaatcagcgaagcgaatcaaagttctcgatctctttcacgatcggccatcacaatcgccagctgctcgtctc  3940700                                                                                             <-------                                                                                             --------                                                                                        <---------AHL20(2)                                                                                        <---------ICU4                                                                                        --------->AHL20(2)                                                                                     <--------ATHB1                    <------NtERF2                                                    <---------ICU4                  <---------ANAC46                                                   <---------AHL20(1)                  <---------LBD16                                                    <---------AHL20(2)                 --------->ALFIN1                                 --------->YAB1     --------->YAB1                 *TSS     >>>>>>>>>TBF1                          <---------ATHB12    --------->AHL20(2)               <---------TGA1a                                 ------>MYB83         --------->ICU4   <---------------------WRI1>>>>>>>>>TBF1                     ------>MYB46(1)      <---------ATHB12 --------->DEAR3(1)<---------LBD16            <---------ZAT6 --------->TOE2(3)      <---------ATHB51 ========================MYC_MYB---------->DOF2              <---------MYB59      --------->YAB1  <-- -->ARF1       ============================bZIP_DOF       <-----------GT1  <-----------GT1 <---------   ccatcgccgaaaaactcaagtcggggaagaagaagaaagaaatatgtagtgtttcacgagtaacctaatcatctatttcacttctaataattttttcact  3940800                                                              --------->HSFB2a(2)                                                   <------MYB83   --------->AHL20(2)                              <------MYB46(1)   <---------AHL20(2)                              --------->ANAC55(2)  --------->AHL20(2)                               <---------ANAC55(1)  <---------AHL20(1)                               <---------ANAC46                 <---------At5g28300  <---------AHL20(2)                               <---------ANAC55(2)         --------->AHL20(2)  --------->AHL20(1)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           ----- ----GT1            <---------YAB1                --------->MYB59        <----------DOF2    xxxxxxxxx ->ZAT6   --------->ANAC55(2)           <---------ANAC46   <-----------GT1     <---------AHL20(2) -------YAB1<---------AHL20(2)         <---------------AtSPL8 <---------HSFB2a(2)  <-----------GT1 --GT1  <-----------GT1           <---------YAB1  --------->MYB111(1)    <---------DAG2  --------->YAB1   ataatttattttacttaatttcatgagagatgtattgtgatggagtacaaattaggtgttattaccagaacataactttttttaattacagtcatatttt  3940900                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                  --------->TGA2(2)                     ---------->DOF2                                                 <-----------TGA1                       --------->SPL7                                                 <-----------HVH21                     <---------MYB52(1)                                                <---------ANAC55(2)                    ----------->HVH21                                                <---------bZIP60(1)                   <---------RAP2.6(3)                                                <---------O2                          <xxxxxxxxxxxxxx                                                --------->ANAC58<---------bZIP60(2)   <xxxxxxxxxxxxxx                                                <---------TGA1a <---------ANAC58      <-----------HVH21                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <xxxxxxxxxxxxxxx                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <xxxxxxxxxxxxxxx                                   xxxxxxxxxxxxxxxxx>smallRNA(fl3)                   --------->RAP2.6(2)                            -------->HAHB4      --------->TGA1a----------->STF1    <xxxxxxxxxxxxxxxxsmallRNA(s)                            --------->YAB1      ===================================================bZIP_DOF                            --------->ATHB12    --------->ANAC46<---------ANAC58   --------->At4g35610                           <---------YAB1       --------->ANAC55(2)                <---------At4g35610                      --------->ANAC58          --------->bZIP60(2)               <xxxxxxxxxxxxxxxxsmallRNA(i)                      ----------->GT1           --------->bZIP60(1)           ------->TEIL                      --------->ANAC55(2)       --------->O2  <---------TGA2(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)                      --------->ANAC55(1)       --------->ANAC58<---------ANAC46 <xxxxxxxxxxxxxxxxsmallRNA(s)                      --------->ANAC46          --------->ANAC55(1)     <---------AHL20(2)                      --------->ANAC58  <xxxxxxxxxxxxxxxxsmallRNA(i)    xxxxxxxxxxxxxxxx>smallRNA(s)         ----------------------->TaNAC69(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(s)        <---------ZAT18    --------->ICU4   <-----------HVH21----------->TGA1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---->AHL20(2)        --------->YAB1xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AHL20(2)         --- xxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------TOE2(2) --------->ANAC46   taatactcagtgtgcctctactaaacgtaattatagggaatgccactgtcacgtcagaaattgatgacgtagattaaatgaactcagccgtaacgcgata  3941000                                     <---------ANAC46                                <---------At4g35610                                --------->At4g35610                               <---------RAP2.3(1)                              <---------RAP2.6(2)                          <xxxxxxxxxxxxxxxxxsmallRNA(le3)                              <---------RRTF1(2)                         <xxxxxxxxxxxxxxxxsmallRNA(s)          --------->ATHB12    <---------ANAC58                           <xxxxxxxxxxxxxxxxsmallRNA(i)         --------->ICU4       <---------ANAC46                          <xxxxxxxxxxxxxxxxsmallRNA(i)         <---------YAB1       <---------RAP2.3(2)                  --------->MYB52(1)       <-------- ------->GAMYB                <---------ANAC58                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxsmallRNA(s)               <---------LBD16                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxsmallRNA(i)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <xxxxxxxxxxxxxxxxsmallRNA(i) xsmallRNA(i)            <-----------RAV1(1)       --------->TOE2(2)  xxxxxxxxxxxxxxxx>smallRNA(i) xsmallRNA(s)      <---------At5g28300 --------->YAB1         --------->YAB1   <---------YAB1       < ------>MYB52(1)  <-----------GT1 ----------->HVH21--------->TOE1(2) <xxxxxxxxxxxxxxxxsmallRNA(s)  <-   caacgggagtaatgactgagttacagtatgttgcggctgacttataacaaaaacatatgaactataacaaaacggcgaagtatgagtataactcagtcag  3941100   <---------ANAC58                                ------->GAMYB   <---------ANAC46                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------ANAC58                             --------->MYB52(1)   <---------ANAC55(2)                        --------->MYB46(3)   <---------ANAC55(1)                       --------->ANAC46       <------ZmHOX2a(1)   --------->ANAC55(2)                       --------->ANAC58     --------->ANAC55(2) ---HVH21                --------->TOE2(3)   --------->ANAC58     <---------TOE1(3)              ---- ---------MYB52(1)    <-----------GT1     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            ----------- ----------HVH21 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <---------TOE2(3)   --------->YAB1   acgttacgtctgatatatcaaatgttacctcagttatactataactcaagcaacggtatggctgagttaaggaatgttgtccgagttataagaagttata  3941200  Previous    Next  AGI:  At4g06701.1    Description:  other RNA Range:  from: 3939603    to: 3940717    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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