Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <-------PIF5                               ------->PIF5                              <---------ZAT2                              --------->ZAT2                          xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------------->AGL15         ----------->RAV1(2)                     ---------->DOF2 ---------------AGL15        ------->TEIL                    --------->YAB1   ------>NtERF2 --------------->AGL1------>ZmHOX2a(2)       ------>NtERF2------->GAMYB   --------->ALFIN1 --------------->AG<---------ARR11(3)   <---------ZAT14  --------->MYB46(3)  <---------PCF2 -----DOF2         --------->ARR11(3)   --------->ZAT14  <---------MYB52(2)  <---------PCF5 ----DAG2       <---------WOX13(1)<-----------HVH21  <-------TEIL  <------ZmHOX2a(1)   ----------->GT1   ttcccaattgagaacaagattgatctcttcgcacctggtcagtactctgccaagattcaacaaacatgaggagaaagaggggccatagaccgaaaaattg  3919200           --------->REM1(1)      --------->ARR11(3)                                             <------ZmHOX2a(1)      --------->ARR14(3)                                     <-----------RAV1(1)      <---------ARR14(3)           --------->AHL20(2)   ----------->HVH21             ------>MYB83      <---------ARR11(3)  --------->AHL20(2)      <---------ALFIN1<-----------RAV1(2) ------>MYB46(1) --------->AtLEC2    ------>ZmHOX2a(1)      <-----------HVH21=================RAV     --------->MYB52(1)   tccatgaagaccttcaccatctcctcgattaaatccaaaaaatagaggtcatacacctctgaaatgttgcaggagcattgcataaaccaaatggcattct  3919300                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                 <-------GAMYB                                                                --------->MYB55(2)                                                                --------->MYB111(2)                                                                --------->MYB52(2)                 <---------ICU4                         <---------ZAT14                             x              <---------HSFB2a(2)                       --------->ZAT14                        ------              --------->HSFB2a(2)                     --------->At5g28300                    --------       ---------->DOF2                         <--------HAHB4   --------->MYB111(1)        --------->ANAC58   --------->ANAC58         ---------->DOF2    --------->YAB1   <---------MYB46(3)         --------->ANAC58   --------->ANAC46       ----------->HVH21    <---------ICU4  <--------P   --------->MYB46(3) ------   --------->ANAC58 <------ZmHOX2a(1)         <---------YAB1  <---------MYB52(1)      --------->WOX13(1)   cttatacgcaaaagttccataaggacatgtgaaagtggttttctcttgatcattacggtgaactggtagttgaaagaaaccactatatccatcaagaaag  3919400                                                                        <-------TEIL                                                              <----------DOF2                                                             =============HOX2a_HOX2a                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           --------->ANAC58       ----------->GT1  <---------HSFB2a(2)          --------->ATHB12 --------->ANAC58       <---------TOE2(3)------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->ATHB12    ------>ZmHOX2a(2) --->ANAC58             --------->WRKY18(1)     ---------->DOF2    --------->HSFB2a(2)        <------ -->DOF2  <---------MYB46(3)            <---------ATHB12   --------->ARR11(3)              --------->YAB1 --->ANAC58    --------->At4g35610    --------->WOX13(1)   <---------ARR11(3)       <----------DOF2   caatagtatgggtgattagctaagcgttcaagcatttgatcaatgaatggtaaaggaaaatgatctttcctagatgcagcatttagctttctataatcaa  3919500                                                                          <----------DOF2                                                                          <---------DAG2  --------->ZAT14                                                                        =============================                                                                        <-----------------AGL3                        >>>>>>>ZML2                                     <-----------------AGL1                        <---------HSFB2a(2)               ----------->RAV1(1)             <---------ZAT14                        --------->HSFB2a(2)              --------->MYB46(3)               <---------ZAT18                --------->YAB1              <----------DOF2             ----------------->AGL1 ------            --------------->AGL15           ------>ZmHOX2a(1)         ------>NtERF2 --------->ANAC58           ===============================================================================MADS_MADS           ----------------->AGL3==================HOX2a_HOX2a <---------MYB52(1)   --------->ANAC58 ---ICU4----------->HVH21        <------ZmHOX2a(2)     <-----------GT1--------->LBD16     --------->ZAT18   tacacattctatgaccagttatagttctagtagggatcaattcatccttttcatttttaacaacagttattccgccctttttagggacgcaatgcactga  3919600                                                                   <---------AHL20(2)                                                                  --------->AHL20(1)                                             *TSS                 <---------AHL20(1)                                            --------->ARR14(2)   --------------->AGL15                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                         --------->ETT(1)      <-----------TBP  --------->ICU4                                         <---------ANAC46      --------->AHL20(2)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------TOE2(3)                                  --------->ALFIN1           <-----------TBP  --------->YAB1                                <---------ANAC46     --------->ANAC58         <---------ICU4                           <---------At4g35610       --------->ANAC58        --------->ICU4                xxxxxxxxxxxxxxxx>smallRNA(i)<---------ARR14(2) <---------AHL20(2)<------ZmHOX2a(1)  --------->ANAC58       <--------P   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->YAB1  --------->ANAC58  --------->CCA1(2)<xxxxxxxxxxxxxxxxsmallRNA(s)<---------------AGL15<---------YAB1 ================================================================================MADS_MADS    <------ZmHOX2a(1) --->ZAT14    --------->YAB1    <---------bZIP60(2)  --------->ANAC46   ----------->GT1      <-------   agaaacccaagtactatcagagatagggtagatgatgtggatgtcggattcacacactcaagtatttatatatttagtaataaggattatttttgaggac  3919700                                                                                        <----------DOF2                                                                                       <---------ANAC58                                                                                       xxxxxxxxxxxxxx                                                                                       <---------ANAC58                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                                  --------->ALFIN1                                   <---------ICU4                               <---------ANAC46                                   --------->YAB1                               <---------ANAC58                            ----------->GT1                                     <---------ANAC58                      <---------YAB1 <---------YAB1      ------->TEIL        --------->DAG2        <- ---ID1          <------------CBF --------->ICU4      ----------->GT1       ---------->DOF2 <--------   aaatacaagtgataagaactattgattatagagaaaattatgagttttgtaagaaaatgtatatagtaagtttgcacaaaaagcgtgtgtctttccatgg  3919800                                                             --------->TOE2(3)       <---------MYB52(1)                                    --------->YAB1      --------->TOE2(3)                              -------->HAHB4 --------->WRKY38(1)                                 <---------AHL20(2) ----------->HVH21            --------->ANAC46       <---------ICU4 --------->WRKY12 --------->TOE1(2)                 <---------YAB1                        --------->AHL20(2) xx>smallRNA(s)   --------->TOE2(3)               <---------ICU4                          <---------AHL20(1) xxxxxxsmallRNA(le3)   <---------ICU4          --------->ANAC46        <-----------------AGL1 ---------DOF2    --------->TOE2(2)   <---------YAB1--------->ICU4    <-----------GT1     <---------AHL20(2) -AtLEC2    <---------AHL20(2)--------->ANAC55(1)--------->ICU4       ------->TEIL        --------->AHL20(1)   cctttgacccttaatttatacctaagaattacacttaattctcatttacacataattattctatcttaaatgtatccattttggtcttcgaatttattgt  3919900                                                                        <---------SPL7                                                                       <---------HSFB2a(1)                                                                       <---------HSFC1(2)                                                                       --------->HSFB2a(1)                                    <---------ANAC58                   --------->HSFC1(2)                                    <---------ANAC58                <---------SPL7 <-----------TGA1                              <-----------GT1                       ----------->HVH21   --------->TOE1(2)         <-------TEIL             --------->WRKY38(1)<---------ARR14(2)  <-------TEIL  --------->HSFB2a(1)      --------->ARR14(2)---------->DOF2  --------->HSFB2a(2)  <-----------HVH21  <---------HSFB2a(1)    xxxxxxxxxxxxxxxx>smallRNA(s) --------->WRKY12--------->SPL7    <---------ALFIN1 ------->TEIL           --------->LBD16    <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ttgaacgttcgaatttgaatcaactccgagattcactggcttcgcctttaagcccattgactctccagaccggacgttccgacttcgtcaccacatccat  3920000                                                                                            xxxxxxxxx                                                                                        --------->WOX13(1)                                                                                   ------->MYC2                                                                                   <-------MYC2                                                                                   ------->MYC4                                                                                   ------->PIF5                                                                                   <-------MYC4                                                                                   ------->MYC3                                                                                   <-------PIF5   ---                                                                                   <-------MYC3   <--                                                                                  ===================                                                                                  >>>>>>>>>>HY5 <----                       <---------ARR11(3)                                         --------->ANAC46<--                       --------->ARR11(3)                                         --------->PIF3(3)<-                      --------->GLK1(1)                                           <---------PIF3(3)<-                   --------->ANAC58                                               ===================                   --------->ANAC46                                               <---------TGA1a ---                   --------->ANAC58                           <----------DOF2     <---------O2 <-----                   --------->LBD16                            ==============================bZIP_DOF             <---------ALFIN1                            --------->KAN4(2)        --------->TGA1a<---            ----------->RAV1(2)                       <---------ANAC58            --------->O2 ------            --------->ZAT2                       --------->ALFIN1             <----------------PIF3(2)          --------->AtMYB61                    <-----------RAV1(1)            <-----------------PIF3(1)          <---------ALFIN1            ---------->DOF2 <---------ANAC58    <---------ANAC58 --------->ATHB12         --------->MYB46(3)         <----------DOF2 <---------PCF2        <---------ANAC58<---------ATHB12   ctcgcatagcgaccacctcgcccgaaatcttctcttcgcttaaagaaacctgtggggcttattccttttgggccttccctgtccacgtggcaatctttgg  3920100  Previous    Next  AGI:  At4g06686.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 6.7e-122 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family) Range:  from: 3915376    to: 3919645    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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