Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    <---------LBD16                                                                 ----------->RAV1(2)                                                           <---------WOX13(1)                                                         --------->ATHB12                                                        --------->ICU4                                                        <---------YAB1                                                      <---------ANAC58                                                      <---------ANAC58                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   <---------ZAT2================================RAV                                                  <---------TOE1(2)--------->LBD16                                              xxxxxxxxxxxxxxxx>smallRNA(s) <---------ANAC58                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             xxxxxxxxxxxxxxxx>smallRNA(i)  <---------ANAC46                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <----                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <----          <---------HSFB2a(2)             <---------RAP2.6(3)   ------>ZmHOX2a(2)      <-----------RAV1(2)  ------>ZmHOX2a(1)               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------ANAC58 xxxxxxxxx <---------LBD16                  <----------DOF2<-----------RAV1(2)    <--------P    xxxxxxxxxxxxxxx -------RAP2.6(3)                 <---------DAG2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)----------->RAV1(1)   agtcctggagttggagaagaattttgccaagaaggcctttttgcagtcatcccaggtcgtgattgatccctggggtagcgttttttcccacagatgggct  3850000                      --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                          -                      --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         = ------DOF2          --------->TOE1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       --- -----DAG2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                   <-- xxxxxxxxxxxxx>smallRNA(se3)      <-----------GT1                                     <xxxxxxxxxxxxxx x>smallRNA(i)  <XXXXXXXXXXXXXXXXXXXXMIR783                           ----------->RAV1(1)    --------   ttatctccaagtgaaaatgggaacaagcgaagcttgaaaccatcttcactaactccattgattttagtaaggccacagagcctttcaaactcgtcaagat  3850100             --------->ATHB12           ------>ZmHOX2a(1)         ------>ZmHOX2a(2)         xxxxxxxxxxxxxxxx>smallRNA(i)        <------ZmHOX2a(2)       --------->ARR14(2)       <---------ARR14(2)      <---------ARR14(1)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->MYB52(1)                    --------->ANAC46 ----->ZmHOX2a(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    xxxxxx =================HOX2a_HOX2a------->TEIL----------->HVH21                             --------->ZAT14 ------>ARR11(3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              ---------->DOF2      <------ -------ARR11(3)     --------->ANAC58  ----------->RAV1(2)     <----------DOF2<---------MYB46(3) ---- xxsmallRNA(i)       --------->ANAC58  <---------LBD16 --------->YAB1 ------>ZmHOX2a(2)<---------ZAT14 ->ICU4<---------GLK1(2)  --------->AtLEC2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    xxxxxxxxxxxxxxx   gatctagcggatcctccattggcaggccatgaaacttgttcccctgaaccatagcaatgagaccgcttttgatctcaaagttgttgttctgtactggagg  3850200                                                          <------MYB46(1)                                                         --------->MYB59                                                         <---------AtMYB61                                                         --------->MYB111(1)                                                         --------->MYB46(2)                                                        <--------P                                                        <---------MYB55(1)                                                      <---------MYB46(3)                                           --------->At4g35610 xxxxxxxxxxxxxxxx>smallRNA(i)                        <-------GAMYB     --------->ANAC58<------MYB83                       <---------MYB46(3) --------->ANAC58<---------MYB46(3)                      <---------TOE2(3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      <---------AtMYB61 --------->At4g35610 <--------P                    <---------MYB46(3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <-------GAMYB      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxx          ----------->TGA1          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           --------->TGA2(2)          ----------->HVH21        --------->ANAC58   <------MYB83               --------->TOE2(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <-----------HVH21 xxxxxxxxxxx>smallRNA(si3)<---------MYB46(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<-----------TGA1 ---AtMYB61  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <-----------RAV1(1)           --------->bZIP60(2) ----->ALFIN1xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxx x>smallRNA(i)   <---------MYB46(3)--------->ANAC58   <------MYB46(1)xxxxxxxxxxxxxxxx>smallRNA(s)   tggaacgattccatgacgctggttgtggttgtgagggaagtcaccagcaccaatgttggtaggttgctcttgctcatctacaacgtcagccattgtgtct  3850300                                                                       ----------->HVH21                                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                   <---------ANAC58                         <xxxxxxxxxxxxxxxxsmallRNA(s)              <---------ANAC58                       --------->ANAC58                        --------->GLK1(1)         *TSS                       --------->ANAC58                  <---------ARR14(2)             ----------->RAV1(1)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------GLK1(1)     --------->ANAC58                     <---------ANAC58                    --------->GLK1(2)           --------->ANAC58                     <---------ANAC58                  --------->HSFC1(2)            --------->AtLEC2                     <---------ANAC46                  --------->HSFB2a(1)           xxxxxxxxxxxxxxxx                    <------NtERF2         <---------TOE2(3) <---------YAB1           --------->ANAC46                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------HSFC1(2)<---------At5g28300    -----             <---------MYB52(1)           <---------YAB1 --------->ARR14(2)        <---------AtLEC2-- xxxxxxxxxxxxsmallRNA(se3)        <---------MYB46(3)   <---------HSFB2a(1)    --------->REM1(2) <---- xxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   gtttctgtctgttctcttagttggcgagcaatacggtcgatgttatcgttgaataggaggttctgatttccttgtgaccgtgtatgcatgcaacagatag  3850400                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   ---------->DOF2            ------->GAMYB       --------->HSFC1(1)      <xxxxxxxxxxxxxxxxsmallRNA(s)           --------->MYB46(3)   --------->HSFB2a(2)  ----------->RAV1(2)           --------->TOE2(3) <---------ANAC58               <---------HSFB2a(2)<xxxxxxxxxxxxxxxxsmallRNA(i)    --------->YAB1 <---------ANAC58           <---------ANAC58    --------->ANAC58          --------->DAG2   <---------ANAC58 xxxxxxx>smallRNA(se3)      <---------ANAC46    --------->ANAC58         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---->At4g35610             <---------ANAC58    --------------->AtSPL8   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------->At4g35610         <-------TEIL       <---------AtLEC2 ---------->DOF2------------>CBF     <x -----At4g35610         --------->CCA1(2)  <--------P--------->At4g35610---------->DOF2    <---------ANAC58   cagccgtgctataacagacgaatcagagatgcgtctagaaagcaggttgcaaggtacctgaaacacaaagacagaaaaggcacaatgttagtaacttgtg  3850500                                                                     --------->RAP2.3(1)                                                                    ------->GAMYB                                                                    <---------RAP2.3(1)                                                                    <---------ATERF1(1)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                   <---------DEAR3(1)                                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                 --------->MYB52(1)                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                          ------>MYB83--------->DEAR3(1)                                                          ------>MYB46(1)                                                        <---------MYB46(2)                                   ----------------->AGL3 --------->MYB52(1)                               <---------ICU4           <---------MYB111(2)                         <                    <---------TOE2(3)                   --------->AtMYB61                           -                ------>ZmHOX2a(2) ------>ZmHOX2a(2)    --------->ANAC58                            <-                --------->YAB1 --------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               ----              --------->ARR11(3)--------->ARR11(3)     --------->ANAC58 <------NtERF2   <---------GLK1(2)              <---------ARR11(3)<---------ARR11(3)     --------->ANAC46------>NtERF2    <---------ARR11(3)         ------->TEIL         <---------ATHB12 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     --------->ARR11(3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             ----------->ARR10   taacaaaaacgaacttgatcttaatgtttctaatgatctcaaatatagcaaacaaacaccaaactggcaacggcgccaaattgatagtaagatttttgtc  3850600                                                           --------->ALFIN1                                                       --------->LBD16                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                     <---------LBD16                                                   <---------ARR14(2)       --------->ARR11(3)                                                   --------->ARR14(2)       <---------ARR11(3)                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->At4g35610                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->AtLEC2                      ---------->ID1         --------->WOX13(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <---------ARR11(3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            --------->ZAT6               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxx          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ---------->DOF2        ---------->DOF2 <-------GAMYB    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------YAB1       - ---------AHL20(2)<---------ANAC58      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->CCA1(2)      - -------->AHL20(2)<---------ANAC58     <------ZmHOX2a(1)<---------MYB52(1)----------->ARR10      ---- --------ATHB12 --------->ARR11(3)   <---------TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <xxxx ----->WOX13(1) <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxx   aattaatccctaaaacactatcttgtcgttgtagtattttaggatgtcaatccaatccggtgtgatgcaaacagatgagatatgatcagaaagctctaag  3850700                  <---------WOX13(1)                  <--------P                 <-------GAMYB                 <---------ANAC58                 <---------ANAC58                                                                 xxx          <---------ARR14(2)                                                                    <----          --------->ARR14(2)                                                                  <xxxxxx     --------->ANAC58                                                                       xxxxxxxxx     --------->AtLEC2        ------->GAMYB                                               xxxxxxxxxxxx     --------->ANAC58      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         <xxxxxxxxxxxx  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                  --------->ANAC58 x>smallRNA(le3)<------MYB83--------->ZAT6                                             --------->ANAC58 -------->ANAC58--------->MYB55(2)                                              <xxxxxxxxxxxxxxxxsmallRNA(i) -------->ANAC58<---------MYB46(3)           --------->MYB52(1)   ---------->DOF2    <xxxxxxxxxxxxxxx ----->WRKY18(1)<------MYB46(1)   ------>ZmHOX2a(1)     ----------->GT1  <------ZmHOX2a(1)xxxxxxxxxxx xxxxxxxxxxxxsmallRNA(s)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------AHL20(2)   <xxxxxxxxxxxxxxx xxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->AHL20(2)<xxxxxxxxxxxxxxxxxx   tcaagccaagcagatagttggttgattctaacagtcctagtatgcaataacagaaatgaagtgaaattaaaagcaggaatggcaatagcaggcaagtgaa  3850800                        <---------ATHB12                   --------->ANAC58                   --------->ANAC58            --------->YAB1                                                                    <------           --------->ICU4--------->YAB1                                                      xxxxxxxx        <---------ARR14(2)                                                                  <-------GAMYB ---------->DOF2  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <---------AtMYB61      <---------MYB46(3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <------ZmHOX2a(1)  <---------ZAT18         <---------DEAR3(2) -----WOX13(1)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxx xxxxxxxxxxsmallRNA(i) --------->ANAC58       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <xxxxxxxxxx xxxxxxx>smallRNA(i)   --------->ANAC58       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <-----------RAV1(2) xxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxx>smallRNA(s)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------DEAR3(1) xsmallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxx xxxxxxxxxxxx>smallRNA(si3)   ----------->GT1 <---------TOE2(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxsmallRNA(le3)--------->WOX13(1)    ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxsmallRNA(le3)--------->ANAC46<-----------GT1--------->ALFIN1 --------->ZAT14xxxxxxxxxxxxxxxxxxx   tgacaaagcagaaatgataacaggcaatcaaatggataaacgattcctaaggatggggtaatcgaatagtgtggtctacttaatctattcaggcggttga  3850900  Previous    Next  AGI:  At4g06656.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 3.5e-294 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 3841924    to: 3850389    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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