Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                              -------                                                                                           <-------TEIL                                                                                          --------->GLK1(2)                                                             ------>MYB83             <------ZmHOX2a(1)                                 --------->TOE2(3)     ------>ZmHOX2a(1)              ===============                                 <----------DOF2      <---------ANAC58             <-----------RAV1(2)                              <---------ARR11(3)      <---------ANAC58 --------->YAB1--------->LBD16                           <----------DOF2     <---------GLK1(2)     <---------ARR11(3)  <---------ARR14(2)                     <-----------GT1   --------->TOE2(3)     ------>MYB46(1)       <---------LBD16 <-   tcttcttctcaacttctgtttattaacttctttatctttaacatcaacagcttcttccttaccaagctcaaaatcatcaacaatttcaggagattcagct  3667100         <---------AHL20(2)                                             <---------TOE2(3)        --------->YAB1                                               <---------MYB52(1)        --------->AHL20(2)                                         <---------ANAC58       <---------YAB1              ----------->GT1          <-------TEIL<---------TOE1(3) ------>ZmHOX2a(2)                --------->DAG2           --------->ARR14(1) ---At4g35610                    ---------->DOF2          <---------GLK1(2) -->At4g35610               ----------->GT1               --------->ARR11(1)      --------->ARR11(3) =======HOX2a_HOX2a   --------->ZAT6                    ----------->ARR10       <---------TOE2(3) --------ARR11(3)   ----------->RAV1(1)        --------->GLK1(1)   <---------ANAC58               ---   tgatctactattatatcatcttcaacagtactgaaaaaagtcaaaactgatttcaaattagattcgatttcgttagggttttaagaaattgaaattgaga  3667200                                                             <-----------TGA1             ---------->DOF2       --------->ATHB12                                      <-----------HVH21    ------>ZmHOX2a(2)       --------->YAB1                                     --------->GLK1(2)      <------ZmHOX2a(2)       <---------ICU4                                     --------->ARR14(2)    --------->ARR14(2)      <---------ATHB12                 <------ZmHOX2a(2)  <---------ARR14(2)    <---------ARR14(2)      <---------YAB1                 --------->GLK1(1)   <---------GLK1(2)      --------->ARR11(3)<--      <------ZmHOX2a(2)        ---------->DOF2     ---------->DOF2           ----------------->AGL1 -------->HVH21              <----------DOF2   ----------->GT1               <-----------------AGL1   ctgacccgatcattgtcatcttgagggagggcttaaaggagatcgaagagagtaaaagagaatcgtcagagagtttgtttccgatcttgggataaagaag  3667300                                                                                    <---------ZAT18                                                                                <---------DEAR3(1)                                                                               <---------ORA47(1)                                                                               --------->SPL7                                                                            --------->ANAC58                                                                            --------->ANAC58                                                                           <-------TEIL          ----------->GT1                                                 --------->CCA1(2)         --------->MYB59                                        <---------At4g35610 <---------ZAT14         <---------TOE2(3)        <---------ARR14(2)            --------->At4g35610 --------->ZAT14         <---------TOE1(3)        --------->ARR14(2)          <---------WRKY38(1) --------------->AtSPL8     <----------DOF2             <---------At4g35610 ----------->HVH21    --------->ARR14(1)    <---------ANAC58             --------->At4g35610 --------->DEAR3(1)  <---------GLK1(2)    <---------ANAC58 <---------MYB46(3)             <------NtERF2        <---------ARR14(2)    <---------ANAC46<---------DEAR3(1)             <---------ATERF1(1)   --------->ARR14(2)   ---------->ID1   --------->ALFIN1              <---------DEAR3(1)     --------->ARR11(1) <-------- --------DOF2       <---------AtMYB61----------->HVH21------>NtERF2    ----------->ARR10  <----------DOF2   cttttggcgtttaggtaaaacggtggtgagaaggcagatgcgacgttttagctcggcgactgagtcatcggcacagatacggacggtgtactcttttcca  3667400                                                      --------->ZAT14                                                     ----------->RAV1(1)                                                    <------NtERF2                                                   <------NtERF2                                                   ------>NtERF2                                                   --------->At4g35610                                                   --------->LBD16                                                   <---------At4g35610                                                  ----------->RAV1(1)                                                  --------->DEAR3(1)                                                  --------->RRTF1(2)                                                  --------->RAP2.3(2)                                                 --------->RAP2.3(1)                                                 --------->RRTF1(1)                                                 --------->RAP2.6(1)                                                 --------->ATERF1(1)                                                 <------NtERF2                                                --------->ABI4(1)                                                <---------ATERF1(1)                                                ------>NtERF2                                               <---------ALFIN1                                               --------->RAP2.6(2)                                               --------->RAP2.3(3)                                               --------->RRTF1(2)                                               --------->RRTF1(3)                                               --------->ANAC46<-----------HVH21                                               --------->RAP2.3(2)                                               --------->DEAR3(1)                                               --------->ATERF1(2)                                               <---------DEAR3(1)                                              --------->ATERF1(1)                                              --------->RAP2.6(1)                                              --------->RRTF1(1)                                              --------->RAP2.3(1)                                              --------->ERF1  <---------ANAC58                                              --------->ORA47(2)                                              --------->DEAR4(2) <---------DEAR3(1)                                             <---------At4g35610 <---------ANAC46          <---------AHL20(2)              <---------ZAT6                 <---------ATERF1(1)<------NtERF2             --------->AHL20(2)     --------->MYB52(1)                    --------->DEAR3(2) <---------ANAC58            <---------AHL20(2)    --------->ZAT14                  <------ZmHOX2a(1)--------->At4g35610  <------ZmHOX2a(1)    <---------ZAT14           <-----------HVH21<---------ATERF1(2) <------NtERF2   --------->ANAC58  --------->ANAC46         ------>ZmHOX2a(1)--------->DEAR3(1)<---------DEAR3(1) <------ZmHOX2a(1) ---GT1       ----------->GT1 --------->LBD16--------->At4g35610--------->ATERF1(1)--------->ANAC58   ttccacttaactgttagagttaattcttcctccgtaagaggagagaccgccgccgcagcactaggcgtcggagaagaggaagaggaagccattttaattt  3667500                       <---------REM1(1)                       <---------ANAC46                     <------MYB46(1)                                                       --------->ANAC46                     <------MYB83                                --------->TOE1(3)         --------->ANAC58                    <---------AtMYB61                       <---------MYB52(1)             ------>MYB83                   <---------WOX13(1)     <---------SPL7   --------->LBD16                 ------>MYB46(1)                  --------->ARR14(2)    <---------------AtSPL3   --------->TOE2(3)    <-----------GT1                  <---------ARR14(2)<---------ANAC58      --------->ANAC46       --------->AHL20(2)                <---------RAP2.6(3) <---------ANAC58      --------->LBD16        <---------AHL20(2)                --------->LBD16    <-------TEIL          --------->LBD16        <---------YAB1   ----               <---------ANAC46--------->DAG2            <---------LBD16     <---------YAB1--------->ANAC58              <---------LBD16---------->DOF2*TSS        <---------LBD16 ---------->DOF2    --------->AtLEC2   gttatgacatttggatgccggattggtgtagaaaaggtacttgtggtactgaaattttccccggtaaccttaaaaaaagattataaattaaccaagcaaa  3667600                                                  ----------->GT1                                               ---------->DOF2                 ------->TEIL                                  --------->AHL20(2)                        ----------->GT1                                --------->TOE2(3)<---------TOE2(3)   <---------YAB1            <-----                         --------->ICU4  <---------GLK1(2)         --------->YAB1              ------                 --------->DAG2 <---------------AGL15             <---------YAB1 <---------MYB111(1) ----->YAB1     ---------->DOF2 --------------->AGL15             <---------AHL20(2)  --------->YAB1-   tataagttgttttggagaaaaagtgtgattcttacattaaacagaaacttaaaggtaacataagttatattataacaaatgtaactactaataagtgaga  3667700                                 <---------YAB1         --------->AHL20(2)    <---------ICU4                          --------->ARR11(3)         <---------AHL20(2)    --------->YAB1                  ------>MYB83         ------>ZmHOX2a(2)         --------->AHL20(1)    -------->HAHB4                  ------>MYB46(1)      --------->YAB1        --------->AHL20(2)    <---------YAB1       ========================HOX2a_HOX2a       <xxxxxxxxxxxxxxxxsmallRNA(i)  <-----------RAV1(1)  <-----------GT1         --------->ARR11(3)  ----------->GT1            <---------TOE2(3)     <------ZmHOX2a(2)   <---------ARR11(3) ----At4g35610             --------->AHL20(2)     <---------ARR11(3)<------ZmHOX2a(1)          <----- --->At4g35610             <---------AHL20(2)     --------->ARR11(3)=======================HOX2a_HOX2a --------->DOF2           --------->AHL20(2)  ---------->DOF2------->GAMYB        <---------ARR11(3)   tgaaaagaaaaaaaattgtgtcttaacatttaatgataactgttggcaaaaagatcagattaacccactaggagataatcgactgatcttaatgcattca  3667800                            --------->ZAT6                           --------->ZAT18                           <---------ZAT18                           <---------ZAT14                           --------->ZAT14                   --------->TOE2(3)                  --------->HSFB2a(1)                  --------->HSFC1(2)                  <---------HSFC1(2)                  <---------HSFB2a(1)             --------->HSFB2a(2)             <---------HSFB2a(2)             --------->ANAC55(2)                      --------->MYB52(1)    <---------ANAC58     <---------ZAT18    <---------ATHB12        <---------ICU4    <---------ANAC46     --------->ZAT14--------->ZAT14             --------->YAB1    <---------ANAC58   --------------->AtSPL8    --------->ZAT18 --------->YAB1                    <- ------GT1   <---------ANAC55(2)        <---------ZAT14         <---------AHL20(2)                <--   ccatttgcttgagttatggaaccttggtgtacactatcccagttcaatgagtaggctaactgcgatataatcatcccagttcaaaactggtgaagaaggc  3667900                                                 <---------AHL20(2)                                                 --------->AHL20(1)                                                 --------->AHL20(2)    <-------GAMYB                                <---------AHL20(1)   <---------MYB46(3)                         --------->AHL20(2)   --------->MYB55(2)                      ----------->GT1   ----------->GT1                        --------->ANAC46                                       <---  <---------AtMYB61                    --------->ARR14(2)                                 <---------WOX13(1)  --------->ALFIN1     ----------->GT1 <---------ARR14(2)                               --------->ATHB12 --------AtMYB61   --------->ARR14(2) <----------TaMYB80            <---------ANAC46   <---------ATHB12 ----NtERF2        <---------ARR14(2)---------->TaMYB80      <----------DOF2      ------>ZmHOX2a(2)   agaggtggttgaaagttggcatatatggttgaaagttggcatatacgataaaatattagaaaactttgtgacttattctcttgatcccactgattgaaac  3668000  Previous    Next  AGI:  At4g06599.1    Description:  ubiquitin family protein. Identical to Ubiquitin-like domain-containing CTD phosphatase [Arabidopsis Thaliana] (GB:Q8W3M6); similar to unnamed protein product [Vitis vinifera] (GB:CAO46996.1); contains InterPro domain HAD-superfamily hydrolase, subfamily IIID (InterPro:IPR011943); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain NLI interacting factor (InterPro:IPR004274) Range:  from: 3665922    to: 3667544    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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