Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <---------ARR14(2)                              ------                                              <---------GLK1(1)                                <-----                                              <---------CCA1(2)         --------->MYB46(3)  <--------                                            --------->YAB1              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      --------->RAP2.6(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                      ----------->RAV1(1)      <---------ALFIN1             ---------                             --------->WOX13(1)--------->ARR14(2)     ------>NtERF2        --------->MYB46(3)      --------->LBD16    --------->AtMYB61 <<<<<<<<<ARR1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      ------>NtERF2   --------->AtMYB61    <---------ATHB12<---------MYB52(2)             ------>NtERF2    <---------LBD16  --------->MYB46(3)    <<<<<<<<<ARR2 --------->AtMYB61               --------->RAP2.6(2)  --------->DEAR3(1) <---------MYB55(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         ------>NtERF2 --------ALFIN1    ------>NtERF2   --------->LBD16      --------->MYB46(3)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------HVH21    --------->LBD16  --------->ANAC46    ------>NtERF2 --------->DEAR3(1)------>NtERF2 ---->AtMYB61     ----------->HVH21------>NtERF2      --------->RAP2.6(2)--------->AtMYB61<---------ATERF1(1) --->MYB46(3)     <---------ETT(1)--------->LBD16   ------>NtERF2    ----------->HVH21--------->ANAC46 ->RAP2.6(2)      --------->DEAR3(1)------>NtERF2  --------->LBD16   <---------ETT(1) --------->LBD16 -SPL14         --------->ANAC46 <---------LBD16 <---------LBD16  --------->DEAR3(1)<---------LBD16 -   atcacctccggctactacccccgaccaccatcaatcccggccacaatcatatccggccaccactaacacctccgaccatcaccatctccggccaccacca  3662500                                                         --------------->AGL15                                                         ============================================                                               ----------->GT1                                              <---------YAB1                                              <---------TOE1(3)                                              <---------TOE2(3)                                        <---------------AGL15                                        --------------->AGL15                                       ----------------->AG                                       <-----------------AGL1                                       ==================================MADS_MADS                                       ==============================================================                                       <-----------------AGL2    ----------->HVH21                  ----------------->AGL2   <-----------HVH21                   ----------------->AGL3                                     <--  ------>ZmHOX2a(1)                    ----------------->AGL1                                    <--- --->AtMYB61                           <-----------------AG                --------->At5g28300  ----- ----ALFIN1                            <-----------------AGL3       <---------ICU4--------->TOE1(3) -ALFIN1                             <-----------GT1     <---------------AGL15    --------->TOE2(3) >AtMYB61                        --------->AHL20(1)   <-----------GT1     ----------->GT1       <---- ---------->RAV1(2)              <---------ARR11(3)--------->MYB52(2)   <---------At5g28300  --------   tctcctgtcacccttacaaaaaccaatttggacaatatactaccatttatggttatttactacattttgaaaattacagtaaaacctcaatagattaata  3662600                                                                                   ------>ZmHOX2a(1)                                                                                  <---------MYB59                                                                                  --------------->AGL15                                                               --------->AHL20(2) <---------------AGL15                                                               <---------AHL20(2)----------------->AG                     <---------AHL20(2)                       --------->AHL20(2) ----------------->AGL1                     --------->AHL20(2)                       <---------AHL20(2) <-----------------AG                    --------->AHL20(2)                     <---------AHL20(2)    <-----------------AGL3                    <---------AHL20(2)                    --------->AHL20(2)     ----------------->AGL3                   ===============================================================================MADS_MADS                --------->AHL20(1)                      <---------ICU4           ----------------->AGL2 ==================================MADS_MADS        <---------AHL20(2)           <-----------------AGL1 ==================================MADS_MADS        --------->AHL20(2)         <-----------GT1 ---------RAV1(1)  <---------------AGL15           --------->AHL20(2)       <---------GLK1(2) ------TOE2(3)  --------->AHL20(2)                 <---------AHL20(2)       <---------ARR11(3) <----- ---->YAB1      <---------AHL20(2)      <---------AHL20(2)--------->ICU4    --------->ARR11(3) ------ -----ICU4     --------->AHL20(2)   <---------AHL20(2)<---------TOE2(3)    <---------RVE1(1)  ------- ->YAB1----------->GT1       ---------->DOF2    --------->AHL20(2)<---------AHL20(2)     ----------->GT1   atgttgggattgcaaaattttattaatttagaaaagttttaatttatcgataaattaatatttattaatttatagagagattttcctaatttagtaattt  3662700                                                                           <---------ARR14(2)                                                                           --------->ARR11(3)                                                                          <---------CCA1(2)                                                 --------->AHL20(1)     --------->YAB1                                                 --------->AHL20(2)    <---------YAB1                                    <---------ARR11(3)                --------->ARR11(3)                 <---------AHL20(2) --------->ARR11(3)                <---------ARR11(3)            --------->AHL20(2)      --------->AHL20(2)           --------->AHL20(2)         --------->YAB1             <---------AHL20(2)           --------->AHL20(1)          --------   <---------AHL20(2)    <---------YAB1          <---------AHL20(2)--------->YAB1          --------->AtMYB61   --------->AHL20(2)  --------->YAB1           --------->AHL20(2) --------->AHL20(2)<xxxxxxxxxxxxxxx ----AHL20(2)   <---------AHL20(2)  <---------AHL20(1)          --------->YAB1      <xxxxxxxxxxxxxxxx --->AHL20(2)   --------->AHL20(2) --------->AHL20(2)       --------->AHL20(2)--------->HSFB2a(2) -->ICU4<-------TEIL <-----------GT1--------->AHL20(1)     --------->AHL20(2) <---------HSFB2a(2)   tttaaaaaaattcataaattttttttcattatagaaaatatatttctaaaattaattacaaataaaaaataatatcatatctagaaaacaacaccaaaag  3662800                                        <---------AHL20(2)                        <---------AHL20(1)                        <---------AHL20(2)                                             --------->HSFC1(2)                        --------->AHL20(1)                                 <---------YAB1             --------->AHL20(1)         --------->AHL20(2)                --------->AHL20(1)             <---------AHL20(2)       --------->YAB1                      <---------AHL20(1)             --------->AHL20(2)     --------->AHL20(2)                    <---------AHL20(2)             <---------AHL20(1)    --------->YAB1              <---------AHL20(1)      <---------HSFC1(2)       ----------->GT1  --------->AHL20(2)                     --------->AHL20(1)      <---------HSFB2a(1) -->DOF2--------->At5g28300       --------->AHL20(2)        --------->AHL20(2)   ---------->DOF2 xxxsmallRNA(si3)      --------->AHL20(2)     <---------AHL20(2)         --------->AHL20(2)        <- xxxsmallRNA(si3)      <---------AHL20(2)     --------->AHL20(2)         --------->YAB1--------->HSFB2a(1)   tttttgatacagtaaaatattagaattaaatttcaaataaaaataaatataaattttagcaaaaaaatattagaattatatttcaaagaaatttcttaca  3662900                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   -                                     <---------AHL20(2)                                            --                                    --------->AHL20(2)                                         <-----                                    <---------AHL20(2)                                         <-----                                 <---------ICU4                                                ------                                 --------->YAB1                   <---------AHL20(2)        ---------               <---------WOX13(1)--------->ATHB51             <---------AHL20(2)            <--------              <------------CBF   <--------HAHB4              <---------ARR11(3)             ---------             --------->ATHB51    --------->AHL20(2)          <---------AHL20(1)             <--------            <---------AHL20(2)   -------->ATHB1        <---------PCF2              ---------->DOF2 <-            <---------YAB1      <---------YAB1         <---------PCF5       <----------DOF2--------->AHL20(2)          --------->YAB1        <---------ATHB51     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->YAB1        <-----------TBP         --------->ICU4 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----------->GT1x     ------->TEIL             *TSS <---------YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  <---------YAB1  ----------->GT1           ------------>CBF --------->ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)< --------AHL20(2)   <-------TEIL<---------ATHB12  --------->ATHB12--------->AHL20(2)--------->DAG2<--   tataatgtatatttataattgatacatttatgcaattattaatttgtgatattgatgggaccatatatttatataaggctttcaaaaaagttattatatt  3663000       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <-----------GT1   <---------AHL20(2) -------->AHL20(2) ------->AHL20(2) ----YAB1                                                                                   --------- ----AHL20(2)                                                                   <xxxxxxxxxxxxxxxsmallRNA(si3) --->AHL20(2)                                                  <---------AHL20(2)<xxxxxxxxxxxxxxxxxxx >AHL20(2)                                              <-----------GT1         <---------AHL20(2) -AHL20(2)                                         --------->AHL20(2)        <---------AHL20(2)     < >AHL20(1)                                         <---------AHL20(2)        --------->AHL20(2)    -- -AHL20(1)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------HSFB2a(2)       <-------- --------AHL20(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->HSFB2a(2)      <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   --------->TOE2(3)--------->AHL20(2)   --------->AHL20(2) <----- ---------AHL20(2)      <<<<<<<<<<<<<<<<<LFY      --------->AHL20(2)        <---------AHL20(2) ------ -------YAB1            <-----------GT1           <---------AHL20(2)       <---------YAB1  --------->AHL20(2)   attaatttatcgatttgtgtcattttttacattggtccaaacttaaaactaaaaaaatttactaatttatagaagttattaatttatcgagtattaattt  3663100      <---------AHL20(2)      --------->AHL20(2)      --------->AHL20(1)                                                              <---------ARR14(2)      <---------YAB1                                                                  --------->ARR11(3)     --------->AHL20(2)                                                               --------->ARR14(2) >AHL20(2)                                                                            <---------ARR11(3) xxxsmallRNA(le3)                                                                    --------->CCA1(1) ---------AHL20(2)           <-----------GT1                                         --------->RVE1(1) ------->YAB1        --------->MYB52(2)                                              --------->GLK1(1) -AHL20(2)        --------->TOE2(3)                                    --------->AHL20(2) ----AHL20(2)    <---------YAB1                                        <---------AHL20(2) ------>ZmHOX2a(1) --->AHL20(2)   <---------TOE2(3)  <----------DOF2 --------->MYB52(2) --------->AHL20(2)----------->RAV1(2)   ataaaaattttattgtataatgttagtttgttaactgttttatcgaaaaatgttagttttgcaattcatccatttattttctcccaaatatcctggtctc  3663200                          <---------AHL20(1)                 <-----------GT1        <---------ARR11(3)           <---------AHL20(2)           --------->AHL20(2)          <---------AHL20(2)            --------->AHL20(1)          --------->AHL20(2)            <---------AHL20(1)          <---------AHL20(1)      <-----------GT1                                          ----------      --------->AHL20(2)  --------->AHL20(2)                                      <---------AHL20(2)      <---------AHL20(2)  <---------AHL20(2)                --------->TOE2(3)     --------->AHL20(2)      <---------YAB1   --------->AHL20(1)          <---------ALFIN1           --------->AHL20(2)     --------->AHL20(2)--------->AHL20(2)          --------->ANAC46           <---------AHL20(2)     <---------AHL20(1)<---------AHL20(1)        <---------ALFIN1--------->MYB46(3)    --------->TOE1(2)     --------->AHL20(1)<---------ARR11(3)        ----------->RAV1(1)         --------->AHL20(2)  ----   tccaaaatataatttttttctacaatattttattttttacgatatattatcccacactattacatcaacaaatccctcatttaataaaacatgagataaa  3663300                                           ------>MYB83                                         --------->AtMYB61                                         --------->TOE1(2)                                <-----------HVH21                               --------->O2------>MYB46(1)                               <---------At4g35610                        --------->ANAC58                               --------->At4g35610                        --------->ANAC46  --------->ARR11(3)          --------->MYB59                             ----------->GT1 <------ZmHOX2a(1)         <-----------HVH21                              --------->ANAC58       ---- ->GT1                  ---------->DOF2  --------->TOE2(2)                --------->ANAC55(1)-------- ------>DOF2 --------->ARR11(3)--------->bZIP60(2)                   <---------ZAT14      --------->YAB1   aaaggattttggacagaacttgttcacaaagtcaggtcacaaacctacgctcaagttgaagacagcgcgagaacacaggtaactaaaaaaaaacataact  3663400  Previous    Next  AGI:  At4g06598.1    Description:  pseudogene, similar to unnamed protein product, blastp match of 52% identity and 3.7e-07 P-value to GP|8096589|dbj|BAA96162.1||AP002092 unnamed protein product {Oryza sativa (japonica cultivar-group)} Range:  from: 3662930    to: 3665392    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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