Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <---------bZIP60(2)                         <---------ANAC58                       xxxxxxxxxxxxxxxx>smallRNA(i)                      ----------->HVH21                     <---------MYB52(2)                    ----------->RAV1(2)                    --------->At4g35610                                 --------->At4g35610                    <---------At4g35610                                 <---------ANAC55(2)                    =======================RAV                          --------->ANAC55(2)                    --------->ZAT2                                      ----------->RAV1(2)                    <---------ZAT2                                      <---------At4g35610                --------->ANAC58                                    <-----------HVH21                --------->ANAC46                                 <xxxxxxxxxxxxxxxxsmallRNA(s)   <----      <-------TEIL ------->TEIL                               --------->ANAC58                  ----- ------ZAT18    --------->ANAC58                              --------->ANAC58                 ------ ----->ZAT18  <---------ALFIN1--------->RAP2.3(3)           --------->CCA1(2)                  <----- -->ANAC58   --------->MYB46(3)----------->RAV1(1)       --------->ANAC58                --------->ANAC58 -->ANAC58 --------->ARR14(2) --------->ZAT18            ----------->ARR10               --------->ANAC58 ->DOF2    --------->PCF2<---------ANAC58                --------->ANAC58 ----------->HVH21    <----- >AtMYB61  <---------TCP15(1) <---------ZAT18   <---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -ALFIN1  <------ZmHOX2a(1) --------->PCF2  ----------->GT1<---------ARR11(3)          --------->CCA1(2)   ccactaagtacaggacccacgcagctgacgagcccacatatgcgaatgggaatttgggcaagataagcccagtcacctgatgcagggagataagcaaata  3621500                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                            <---------GLK1(1)                                                                           --------->ARR14(3)                                                                           <-----------ARR10                                                                 --------->ARR11(3)       --------->LBD16                                                                 --------->ARR14(2)       <---------SPL7                                                                 <---------ARR14(2)       -----------                                                                --------->GLK1(1)     <------ZmHOX2a(2)                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                               ---------->TaMYB80    --------->ARR11(3)                                                               <---------ARR14(2)    --------->ARR14(2)                                                    ----------->HVH21      <---------ARR14(3)                                                   <---------MYB52(2)      --------->ARR11(3)                                 <---------SPL7    --------->DEAR3(2)      <---------ARR11(3)                                 --------->ZAT18  --------->At4g35610  =============HOX2a_HOX2a                     --------->CCA1(2)    --------->ARR11(3)   <---------KAN4(2)     <---------ARR14(2)                    --------->ARR14(2)   <---------GLK1(1) --------->HSFB2a(2)  <---------ANAC46                    --------->ARR11(3)   <---------CCA1(2) <---------HSFB2a(2) <---------LBD16                    <---------ARR14(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)   ======================HOX2a_HOX2a                  ----------->ARR10<---------ARR14(2)     ------>MYB46(1)  <---------ARR14(2)                 <------ZmHOX2a(1) ------->TEIL   <---------At4g35610  =======================HOX2a_HOX2a             <---------ANAC46   <---------ANAC58 <---------ARR14(2) <---------HSFB2a(2)  --------->LBD16         <---------MYB52(2)    --------------->AtSPL8   --------->AtMYB61 <------ZmHOX2a(1) ---------        --------->At4g35610 --------->LBD16  <---------LBD16 --------->LBD16--------->GLK1(1)       -      <------ZmHOX2a(1)   <---------HSFB2a(2)<xxxxxxxxxxxxxxxxsmallRNA(s) ===================HOX2a_HOX2a  --------->TOE1(2) <---------ARR11(3)  xxxxxxxxxxxxxxxx>smallRNA(s)<-----------RAV1(2)------>ZmHOX2a(2) -----ICU4----------->TGA1<---------LBD16--------->GLK1(1)------>MYB83 <------ZmHOX2a(1)<---------LBD16 ---->YAB1----------->HVH21<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ARR14(2)--------->LBD16    = --->ICU4--------->DEAR3(2)--------->ANAC46 <xxxxxxxxxxxxxxxxsmallRNA(s)  ====================HOX2a_HOX2a ----ATHB51  <---------bZIP60(2)<---------ANAC58 --------->ARR14(2) <---------LBD16  <---------ARR11(3) ----ATHB12--------->MYB52(1)<------NtERF2<---------ARR11(3)--------->LBD16--------->ARR14(2)<-------   atgacctaggaactgacgaggagatattcgcggagcgtacctgatatctcggaactgacctcccgaatatccaggaggatctccgtagatcccggacgga  3621600        <---------ANAC46        <---------ANAC58     ------->MYC2     <-------PIF5     ------->MYC3     ------->MYC4     <-------PIF4     <-------MYC2     <-------MYC4     <-------MYC3     ------->PIF4     ------->PIF5    <---------TGA1a    <---------O2<---------------AGL15    --------->O2--------------->AGL15                                            <----------DOF2    --------->TGA1a                                                              <---------DAG2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     <---------ALFIN1    xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  ------->GAMYB<-----------------AGL3                                       --------->ANAC58  <---------ALFIN1                                                          <---------ALFIN1  <------------OsbHLH66                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->MYB46(3)                                                     --------->ANAC58 >HVH21 <---------ANAC58        <------ZmHOX2a(1)                       --------->ANAC58 >SPL7 <-------TEIL           --------->ANAC58                          <---------ALFIN1 ------->P     ----------------->AGL3<---------ANAC46                  <---------ZAT18--------->ZAT6 =============MYC_MYB    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --DEAR3(1)--------->WRKY12   --------->ANAC58               <---------ZAT18--------->ANAC58       <-   gcaaccacgtgcgtagacctatataagggagcaaggacgacttggaagggacattcaatctagttcacattggcacacacacacttttacacttgtaatc  3621700                                                                                              <------                                                                                    ------>ZmHOX2a(2)                                                                                   --------->CCA1(2)                                                                                   <------ZmHOX2a(2)                                                                                  <---------ARR14(3)                                                                                  <---------ARR11(3)                                                                                  <---------ARR14(2)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------AGP1                                           <---------MYB52(1)                     --------->AGP1                            <---------AHL20(2)                                    --------->ARR14(2)                            --------->AHL20(2)                                    --------->ARR11(3)            ---------->DOF2--------->AHL20(2)                                     --------->ARR14(3)    <---------YAB1      --------->ICU4  <-------TEIL                              <-----------ARR10-- ---------DOF2   <----------DOF2   ---------->DOF2          <-----------GT1     <xxxxxxxxxxxxxxxxxxxx   tcttttctcattgtaaaagctttgtcaaaattaatacaaaagtccatttgttcttagcaatataactctcacggtttcagtgaagatctagccctccttt  3621800                                                                                          --------->KAN4(2)                                                                                         --------->KAN4(1)                                                                                        <------ZmHOX2a(2)                                                                                       --------->ARR11(3)                                                                                       <---------ARR11(3)                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                                 <---------AGP1                                                                                 --------->AGP1  <---                                                                                 <---------ARR14(2)                                                            =============================HOX2a_HOX2a                                                            ------>ZmHOX2a(1)    <---------ARR14(3)                                             ======================HOX2a_HOX2a   --------->ARR14(2)     --------->YAB1                         --------->ARR11(3)                   --------->ARR14(3)     --------->TOE1(3)                 --------->TOE1(2)    ===================================HOX2a_HOX2a     --------->TOE2(3)                --------->DEAR3(2)    ==============================HOX2a_HOX2a   <---------ARR11(3)         --------->GLK1(1)     <------ZmHOX2a(2)   --------->GLK1(2)<---------KAN4(1) ----DOF2                     <---------GLK1(1)     ===============HOX2a_HOX2a   --------->ARR11(3) ------->YAB1                >>>>>>>>>>GATA-1<------ZmHOX2a(2)      --------->YAB1--------->CCA1(2) xxxsmallRNA(s2)        <---------ANAC46    <---------ARR11(3) <----------DOF2   <---------ARR11(3)   ctcataatcttaagtacaaatctcttatgtggatttcagaacccacgatcatggatcatttcctcctttctcataatcttgaagatctagatcattccaa  3621900                                     <------ZmHOX2a(2)                -------->P                                    --------->ARR14(2)             <---------ANAC58                                    *TSS                           <---------ANAC58             <----                              <------ZmHOX2a(2)                ------>ZmHOX2a(2)              -------                            --------->YAB1                    <------ZmHOX2a(2)               <------                            ------->GAMYB                     --------->CCA1(2)              --------                           --------->MYB46(3)                <---------AGP1                ----------                          ------>MYB46(1)                    <---------ARR14(3)       --------->MYB52(1)                          ------>MYB83------>ZmHOX2a(2)      --------->AGP1<-----------HVH21<--------                  --------->YAB1    <---------ARR14(2)       --------->ARR14(3)   ------>ZmHOX2a(2)                <------------CBF    ------->TEIL             <---------ARR14(2)  <------ZmHOX2a(2)             xxxxxxxxxxxxxxxx>smallRNA(i)                    --------->ARR11(3) --------->ARR14(2)       --------->MYB52(1)--------->MYB52(1)                  --------->ARR14(2) <---------ARR14(2)     <---------MYB52(2)--------->MYB46(3)                    <---------ARR11(3)--------->At4g35610 <- ------ALFIN1------------>CBF--------->ARR11(3)            ----------->ARR10   <---------At4g35610 <-   caccgaaactaacacatcaattgtgaccaacgatcatggatcccaattcatccaattcgtcaagatctggcttaccagttcagatcccaaacgatgacgt  3622000                      ------>ZmHOX2a(2)                     --------->GLK1(1)                     <---------GLK1(1)                     <------ZmHOX2a(2)                    ------->TEIL                    <---------ARR11(3)                    <-----------ARR10                    <---------ARR14(2)                    --------->ARR14(2)            ------>MYB83            ------>MYB46(1)                                                                         -          --------->DEAR3(1)                                                                       --          --------->AtMYB61                                                                        <-          <---------ALFIN1                                                                         <-         <---------At4g35610                                                                      <-- -----MYB52(1) --------->MYB52(1)                                                                 --- -->bZIP60(1)--------->MYB46(3)                                                                   --- ---bZIP60(1)<xxxxxxxxxxxxxxxxsmallRNA(i)                                                         --- --->STF1--------->ATERF1(1)             <-------TEIL                                             <-- ->TGA1 <---------ATERF1(1)          <---------TOE2(2)     ----------->HVH21                      <-- -TGA2(2)--------->At4g35610  --------->LBD16      --------->TOE1(3)                           ------ --------YAB1<---------MYB55(2)     <-----------RAV1(2) --------->ZAT6                         ------ --------TOE2(3)    --------->ARR11(3)  <--------P --------->TOE2(3)                           <-----   tatggatgggcacctcccaacggatctccctcccgagcccaggttgatgctatccataacactgacacagagaacgtctcccaaaactctaattcttcta  3622100          <-----------GT1         <---------ATHB12       ------>MYB46(1)       ------>MYB83     <---------MYB59     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----------->HVH21                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----->ZmHOX2a(2)                                  --------->ANAC58 ------->CCA1(2)                                   xxxxxxxxxxxxxxxx>smallRNA(s) --------At4g35610                                 --------->ANAC58 -----ZmHOX2a(2)                               <-----------TGA1 -------AGP1             --------->ANAC58      <-----------HVH21 ------>ARR11(3)         --------->ANAC58     --------->ANAC46 ------>ARR14(2)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>AGP1          --------->LBD16         --------->ANAC58 -------ARR11(3)     --------->ANAC58         --------->O2                            xxxxxxxxxxxxxxx -------ARR14(2)     --------->ANAC46         --------->ANAC58                      ------>MYB83 --->HSFB2a(2)       --------->ANAC58         --------->bZIP60(2)                   ------>MYB46(1) --->HSFC1(1)       <---------LBD16      --------->ANAC58                   ----------->RAV1(2)    -- ----HSFB2a(2)    <---------ALFIN1       --------->ANAC58        --------->MYB52(1) -------->P     --   gatctgaccaaatcactccccctccgcaaacaaggggcgaagaacgaaacgtcacgatacagcctccaaacggagataacctggccaacctgtctattga  3622200                                             <---------ICU4                                           <---------ARR11(3)                                           --------->ARR11(3)                 <---------At4g35610      --------->YAB1                 <------NtERF2           <---------ATHB12                ------>NtERF2            --------->ICU4               --------->ATERF1(2)  --------->ANAC58               <---------ATERF1(2)  --------->ANAC46             ------>MYB83           --------->ANAC58            ----------->HVH21      --------->LBD16          --------->ZAT2           <---------LBD16          <---------ZAT2           ------>NtERF2         ------>NtERF2            <---------ANAC46        ------>NtERF2            <---------LBD16       ----------->HVH21         ---------->CDC5                                                    -      --------->LBD16         --------->GLK1(1)                                                 -----      ------>NtERF2           <---------At4g35610                                  <---------ANAC55(2)     --------->ANAC46         --------->At4g35610                                  <---------ANAC58 -    <---------LBD16           <---------ZAT2 --------->YAB1                        <---------ANAC58 < xxxxxxxx>smallRNA(fl3)       --------->ZAT2<---------YAB1                 --------->ANAC58     <---- ------->PCF5------>MYB46(1) ----------->ARR10                             --------->ANAC58xxxxxxxxxx ------->PCF2<-----------HVH21<---------GLK1(1)   ------->TEIL <-----------GT1    <---------LBD16  --   ggtccctccgcgacctgccagcgaattagccgagctccgcgcaatgatcatgaacttgatcaatttaaccaaaaaccaagaaattgcgcatcgcaacctc  3622300                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                           ------>NtERF2                                                                                          --------->LBD16                                                                                         <---------LBD16                                                                                        <---------ALFIN1                                                                                       --------->ANAC46                                                                                       <---------ALFIN1                                                                                     <---------ATERF1(1)                                                                                     <---------ALFIN1                          <------ZmHOX2a(2)                                         <---------ALFIN1                     --------->ANAC58                                               <---------ATERF1(1)                     --------->ANAC58                                              <---------ATERF1(1)                   --------->CCA1(2)                                               <---------ALFIN1              --------->ZAT2                               <---------ARR14(2)     <---------ALFIN1            <---------WRKY12                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)------            <---------WRKY38(1)                            --------->ARR14(2)     <---------ATERF1(1)            <-----------RAV1(2)                           <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ALFIN1          <-----------HVH21               <---------At4g35610                    <---------ALFIN1          <---------PCF2 <---------ARR11(3)    <---------ANAC46 <---------ANAC46 <---------ATERF1(1) ----->NtERF2 <---------ZAT2       <---------AtLEC2    --------->ZAT18  <------ZmHOX2a(1)xxxxxxxxxxxx ---->ANAC46xxxxxxxxxxxxxxxx>smallRNA(s)  --------->At4g35610  --------->LBD16  --------->ANAC46 -------->LBD16   <---------ARR14(2) ----------->HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->LBD16 ------NtERF2 --------->At4g35610--------->ANAC58 ---------->DOF2   <--------P <---------ALFIN1<----- -----DEAR3(1)<---------At4g35610--------->ANAC58--------->ALFIN1--------->LBD16<---------ALFIN1 xxxxxxxxxxxxx>smallRNA(s2)------>ZmHOX2a(2)  <---------TOE2(3)<---------LBD16<---------ATERF1(1)   - ------->DEAR3(1) --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->PCF5--------->ANAC46   gccgcgattgtgggtcagcagagacgcgatctcactcgcatgacagatgaggtagagcgcgataccgcgggtaaggaggtccccccccccccccgcgaaa  3622400  Previous    Next  AGI:  At4g06591.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 2.1e-121 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family) Range:  from: 3621936    to: 3626270    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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