Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 ------>ZmHOX2a(2)              --------->CCA1(2)              <------ZmHOX2a(2)                            <----------DOF2             <---------ARR14(2)                      --------->ANAC46             --------->ARR14(2)                      ----------->HVH21             <---------AGP1                         --------->MYB46(3)             --------->AGP1                         --------->DEAR3(2)             <---------ANAC58 -------------->AGL15                            <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ANAC58 ---------------AGL15    <<<<<<<<<GATA-1      ------>ZmHOX2a(1)     <---------ALFIN1         <------- ----->ZmHOX2a(1)       <-----------GT1      --------->TOE2(3)      --------->REM1(1)      ---------- --------------->AGL3 <---------AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC46 ------>YAB1 --------->ARR11(3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------ANAC58 >YAB1       <---------ARR11(3)            <xxxxxxxxxxxxxxxxsmallRNA(i)        <---------ANAC58   tcctaatattagctagatctacaatttatctatctctcgagacaattccttagacccgacgctttaatctacaccttgtttacttgcttatttgtctttt  3432700                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                        --------->MYB52(1)                                                                                      xxxxxxxxxxxxxxx                                                                               <---------MYB52(1)----                                 --------->YAB1                                <xxxxxxxxxxxxxxxxxxxxx <-------TEIL                   <---------YAB1<---------ANAC46                xxxxxxxxxxxxxxxxxx>smallRNA(si3) ---DOF2 <----------DOF2--------->AHL20(2)    <---------ANAC58              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) >ID1 <---------AHL20(2)<---------AHL20(2)    <---------ANAC58           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   acattcatttactttgtctagcttatttaaaaacatcataagtctattgtgtgaacatagagaactcagtgaaattcgacccttaagtgctaacgacgat  3432800     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --ZmHOX2a(2)        <---------TOE1(3) ----ARR11(3)        <---------TOE2(3) --->ARR11(3)    --------->TOE1(3)                                    <-----------GT1 xxxxxxx>smallRNA(si3)----------->GT1             <------NtERF2    <----------DOF2 -->ZmHOX2a(2)  <---------At4g35610              ------>NtERF2<---------ARR11(3) xxsmallRNA(se3)--------->At4g35610            ---------->ID1 --------->ARR11(3)   ctcttatttgagggagtaagcttaaggtaatttgagctatatcaattttggcgccattgccgaagttctcttttacttcaccattagactaggtgtcatt  3432900                                        <----------DOF2                                    <---------CCA1(2)                                 ------->MYC2                                 <-------MYC3                                 ------->MYC3                                 <-------MYC2                                <---------ANAC55(2)                                --------->ANAC55(2)                                <---------ANAC46                                ===================bZIP_DOF                                <---------O2           <---------ANAC58                                ===================bZIP_DOF                                --------->O2           <---------ANAC58                                --------->TGA1a      --------->ARR11(3)              ============================bZIP_DOF   <---------ARR11(3)    <---------TOE2(3)              <----------DOF2   <---------TGA1a     <---------GLK1(1)      <---------YAB1       <---------ARR11(3)     <-----------GT1       <---------CCA1(2)<-------TEIL       --------->ANAC55(2)       <---------GLK1(2)<---------ANAC55(2)   <----------DOF2    --------->LBD16        <---------ANAC55(2) --------->ZAT6         --------->ANAC55(2)<---------ARR11(3)   <-----------RAV1(2) --------->GLK1(2)   ttaagtctagatacttcttttctatcacctattcacgtgtttctttatcttttgatatcttgtgttccaggtacattgagattgagaatcacgtttcaat  3433000                                                                                  --------->TOE2(3)                                                      --------->ZAT14             <----------DOF2                                                      --------->At4g35610         --------->TOE1(3)                                                      <---------ZAT14       --------->ANAC46         --------->ANAC58           --------->ALFIN1  <---------At4g35610   --------->ANAC58         <---------YAB1     --------->AtMYB61  ------->GAMYB                --------->ANAC58         --------->ANAC58 ------>NtERF2       <---------ALFIN1        ------------>CBF         --------->ANAC46--------->ANAC46 <------ZmHOX2a(2)          ----------->RAV1(1)         <---    <----------DOF2   <---------ETT(2)  --------->WOX13(1)         --------->At4g35610          <----   ggcagactttcacgatagtatcgatcgacaccatcagagtgtcgatcaacacactctgcagaacgagacagcgacaataggcaactttaacagaactgat  3433100                --------->YAB1               <------ZmHOX2a(2)          ------>MYB83          ------>MYB46(1)         --------->MYB52(1)         --------->MYB55(1)        --------->AtMYB61        <---------MYB55(2)                                                    ====================HOX2a_HOX2a        <---------MYB111(2)                                                 <---------ARR11(3)        <---------MYB111(1)                                                 --------->ARR11(3)        <---------MYB46(2)                                                <---------YAB1        --------->MYB46(3)                                              --------->YAB1     --------->REM1(1)   --------->ANAC58                            <----------DOF2 *TSS--------->ANAC46    --------->ANAC58                           <---------DAG2 ------ICU4--------->MYB46(3)-------->P ---------->DOF2       --------->ANAC46------>ZmHOX2a(2) -----YAB1-------->P     --------->ANAC46          <----------DOF2------>NtERF2            <------ZmHOX2a(1)   catttctacaccaaccgatcagcattcaagctacctccatttgaaagagaagactttgctatacaccctgccttttatgatctggtatgaagaggaaagt  3433200                ------->TEIL                                                             <-----------GT1              <-------TEIL                                                         --------->ZAT2          --------->LBD16                                                          --------->At4g35610     --------->GLK1(1)                                           ---------->DOF2   <---------At4g35610     --------->At4g35610     --------->ATHB12                   --------->YAB1     <---------ZAT2     <---------GLK1(1)      <------ZmHOX2a(2)              ------>ZmHOX2a(1)     <-----------RAV1(2)    --------->ARR11(3)     --------->ARR11(3)          <---------ZAT18      <---------REM1(1)    <---------ARR11(3)     <---------ARR11(3)          --------->ZAT18      --------->ALFIN1    <----   ttagaagagctcccgatgcatccccattagatcatttggaagtcttcgaagacatagtgtcctctatcaaagcagaaggtgtaccagctgattaccttct  3433300                                               <-----------HVH21                                              <---------ANAC58                                         --------->ATHB12                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                <------ZmHOX2a(1)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->MYB46(3)                          <---------ZAT2 <---------MYB46(3)<-----------RAV1(2)                          <---------At4g35610 <---------ANAC58  --------->ZAT18                          --------->At4g35610 <---------ANAC46  <-------TEIL          --------->PCF2--------->ZAT18 <---------YAB1  <<<<<<<ZML2   -------->P                   -- ------DOF2  <---------ALFIN1--------->At4g35610 <---------WRKY12  <---------MYB52(2)             <--   ttgcaaactcttgccccactctctagtgagcagaggaacatcatggttgcgtcaactagaaccaggttcactaaccaattggacttatacaaagaatgca  3433400                             ---------->DOF2                         ----------->HVH21                        --------->LBD16                       <---------ANAC58                       <---------ANAC58                   --------->ZAT14                         <--                       <---------ANAC55(2)                <---------ZAT18                 <---------ZAT2                    <---------ARR14(2)          <---------ARR14(2)                        --------->At4g35610      <-----------GT1  --------->ANAC55(2)      <-----------ARR10                         --------->ZAT2 ------->YAB1       --------->ARR14(2)          --------->ARR14(2)                     <---------At4g35610 -----TEIL          ------->TEIL               <---------CCA1(2)                    ---------->DOF2   ttcatatatcacttcttcgatgaatccgtgacaaaggcacttcgtttgcaaatctcttcgttcactcaggctctagtcgagtcccttagagcagcttggc  3433500                                     <---------ANAC46                                     <---------ANAC58                                <---------O2                                --------->O2                                                      <--                                --------->TGA1a                                                   <--                                ==================================================bZIP_DOF   --------                                <---------TGA1a                                            <---------LBD16                 <---------ANAC58    <---------ANAC58                               --------->ANAC58                 <---------ANAC46<-------MYC3                                       --------->ANAC46  <-----------HVH21           <---------ALFIN1                         ---------->DOF2    --------->MYB52(1) ----NtERF2      <---------ANAC58------->MYC3              --------->WOX13(1)       --------->ANAC58   tccgtttcaggtcttattagcgtgaatgtccccaacgtggcttccaagagagccaactcatcaatctattctacaaaggaatagccaagccataccggag  3433600  Previous    Next  AGI:  At4g06550.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 9.8e-107 P-value blast match to gb|AAL06420.1|AF378078_1 reverse transcriptase (Arabidopsis thaliana) (Gypsy_Ty3-family) Range:  from: 3433101    to: 3438957    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version