Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <-----------GT1          --------->AHL20(2)       ----------->GT1     ------>ZmHOX2a(2)    <------ZmHOX2a(2)    --------->CCA1(2)   <---------ARR14(2)   <---------ARR11(3)                                                        --------->ZAT18   <---------AGP1                         ---------->DOF2                    <---------DEAR3(1)   --------->AGP1                        --------->YAB1              ------>MYB83  <------ZmHOX2a(2)   --------->ARR14(2)                   <<<<<<<<<ARR2                ------>MYB46(1) <xxxxxxxxxxxxxxx   --------->ARR11(3)                   <---------ATHB12        <-----------GT1   --------->ARR14(2)   --------->ARR14(3)                 --------->WOX13(1)      <---------MYB52(2)  <---------ARR14(2)-   <---------ARR14(3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->ALFIN1   <xxxxx -----TEIL<---------AHL20(2)    --------->YAB1       --------->GLK1(1)  ---------->DOF2     <xxxxxxxx   ttcaagatctagttaattactctaaatctagcattaagaacaatcaaagatgaagaattctacaaataacctagcaaagtgggcgatctactaaaccata  3404600                                                             <---------MYB52(2)                   --------->ARR14(2)                       --------->ANAC55(1)         --------->YAB1                                     --------->ANAC55(2)   --------->TOE2(3)  --------->TOE2(3)                     --------->ANAC46   --------------->AGL15                                    <---------ANAC55(2)   <---------------AGL15     --------->ANAC58               --------->ANAC58  ----------------->AGL2     --------->ANAC46               ----------->GT1 xsmallRNA(s)      <---------ARR14(2)                       --------->ANAC58 ------>TEIL <---------ARR14(2)                     <---------WOX13(1)             --------->YAB1 xxxxxxxxxxxxxxxxxxsmallRNA(s2)                   --------->ATHB12<---------AHL20(1)                < xxxxxxxxxxxxxxsmallRNA(le3) --------->ANAC58    <---------YAB1 >>>>>>>>>MYB98 ---------->DOF2      <   tgaatccctaatgagaaaccgtattcttaacaagcaaactactcagacatattgattgaaacaagtaacatatttgatatagaaagcataaacacagcaa  3404700                        --------->ZAT14                        <---------ZAT14                    ------>ZmHOX2a(2)                   <---------GLK1(1)                   <------ZmHOX2a(2)                   --------->GLK1(1)                  <---------ARR14(2)                  <---------ARR11(3)                  --------->ARR14(2)                  --------->ARR11(3)             ---------->DOF2 <---------ZAT14                             <---------ANAC58           <---------YAB1    --------->ZAT14                             <---------ANAC58 ---------TOE2(3) <-----------ARR10                             >>>>>>>>>NAM <---------YAB1 ---------YAB1   <------ZmHOX2a(1)             ------->TEIL --------->MYB52(1)     <----------DOF2 --   ataagattagagtatgaaaggatctcttcactgtattgagaattgaatgaatctctgaaaaacaagggatgaatagcttatgtttctttgaaaacttgat  3404800                                                                                <---------ICU4                                                                                -------->HAHB4                                                                                <--------ATHB1                     <------MYB83                                              <---------ATHB12                     <------MYB46(1)                                           --------->ICU4                 --------->ATHB12        --------->REM1(1)                     <---------ATHB51          --------->AHL20(2)        --------->ZAT6                           --------->YAB1         < -------->DOF2  <---------YAB1   --------->YAB1  <---------AHL20(2)   --------->LBD16              --   gaaaagcttgaataaaacatgataggtctaaacaatgaccactacaactatatatatgccctaataaacgtccagggactaataattcaaatagggaagt  3404900                                                                      <---------ETT(2)              <-----------GT1                                     --------->ETT(2)            <-----------GT1                                      <------NtERF2<------ZmHOX2a(1)         --------->ARR14(2)                               XXXXXXXXXXXXXXXXXXXX>MIR401         <---------ARR14(2)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <-----------RAV1(1)               <-----------HVH21 ----------------->AGL1 *TSS      <---------YAB1 <---------HSFB2a(2)               <-----------TGA1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->HSFB2a(2)          ---------->DOF2<---------ZAT14   <---------ANAC46    --------->ALFIN1 ---------LBD16     <---------HSFB2a(2)     <----------DOF2xxxxxxxxxxxxxxxx>smallRNA(i)  <---------WOX13(1) --------->RAV1(2)  --------->HSFB2a(2)   ------->TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   cttctggggcaaattttcacttctgtaaacttgaaagcgtcatgaactttactgggccaaaactggtgtcgatcgacacaggaatgtgttgatagacact  3405000                                           --------->At4g35610                                        ------>ZmHOX2a(1)                                       --------->TOE2(3)  --------------->AGL15                --------->TOE1(3)                                       <----- <-----------------AGL3       <----------DOF2                       <---------CCA1(2)         ------- <-----------------AGL1  ------>ZmHOX2a(1) <---------At4g35610   ------>ZmHOX2a(1)     ------>ZmHOX2a(1)   ctcactgaatttggaactgaaatcgtccttagcttttgtttccttagctctcgctccgaaatgtctcctcatctctattgtcatccctcctcatagatac  3405100                                                                                           --------->WOX13(1)                                                                                   <---------TOE2(3)                                                          --------->ZAT6    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                ---------->DOF2     >>>>>>>>>RAP2.2         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         <---------MYB52(2)       <---------ARR11(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---------->DOF2    --------->HSFB2a(2)          <---------CCA1(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --TEIL             <---------HSFB2a(2)    <---------ARR11(3)   <---------ANAC58   <---------TOE1(3) -->CCA1(2) ---------->DOF2--------->MYB52(1)  ------>ZmHOX2a(1)<---------ANAC58   --------->MYB59   atgaaaagactctaaaaagactcgagaactaacagaaagactcaaaatcctatatctaaaacactatcgtgtcattgtagtattttaggttgtcaatcca  3405200                                                    --------->ZAT2                                                    <---------ZAT2                                 --                                                   --------->AtLEC2           --------->YAB1       <-                                                   --------->ANAC58        ------->GAMYB           --                                              --------->ANAC58   --------->MYB52(2)----------->GT1 --                                   --------->ZAT18 --------->ANAC58       --------->ZAT6   --------->MYB52(1)                          --------->ATHB12    --------->ANAC58 <---------MYB52(1)<---------ICU4    --     <---------YAB1      <---------YAB1   <-----------HVH21  <---------MYB46(3) --------->ICU4    <--   atctaatatgatgcaaacagatgatatatgatttgaatgccctatgtcaagccaagcagagagttgttagtttctaacagtcataatgtcaaataacaga  3405300                                                                       --------->YAB1                                                                      <---------ATHB12                                                            <---------YAB1       ------->TEIL                                        --------->ARR11(3) ------->ANAC55(1)                                     <--------P--------->ANAC58               ----- --------ANAC55(2)         --------->At5g28300       ----------->GT1--------->WOX13(1)        <------ZmHOX2a(1) ------->ANAC58       --------->ANAC46               --------->ANAC58--------->ANAC58        -------- ------->ANAC58      --------->RAP2.6(3)             --------->ANAC58--------->ANAC58  <-------TEIL ------->ANAC55(2)  --------->MYB52(1)         ---------->DOF2   --------->ANAC58     --------->GLK1(2) ---------------------TaNAC69(2)            --------->YAB1 <---------ARR11(3)        <---------GLK1(2)   aacgtaatgaaactaaaatgcaaaacggcagtaataggcaaactaataacaaagcaggtaagataataggcaatcaaatggataagagattcgtaaggat  3405400                                         <------MYB83                                         --------->ANAC58                                 --------->AHL20(2)                      ------>ZmHOX2a(1)  --------->ANAC58                                 <---------AHL20(2)                     --------->TOE2(3)   <------MYB46(1)                               --------->WOX13(1)            <---------ANAC46           <--------P             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---->ALFIN1<---------ANAC58         --------->YAB1          xxxxxxxxxxxxxxxx>smallRNA(s)<---------ATHB12 ->ICU4     <---------ANAC58        <---------ATHB12      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ggggtaatcgaatagcgtggtctccttaatctattccaatggtaggcaaaacttcatagaagctatccctagacaacaagttcaattaccaattaatcca  3405500  Previous    Next  AGI:  At4g06547.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.1e-14 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 3404976    to: 3407876    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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