Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             xxxxxxxxxxxxxxxx>smallRNA(s)                         --------->At4g35610      --------->AHL20(2) <---------At4g35610    <----------DOF2      <---------ZAT2  ------>ZmHOX2a(1)      --------->ZAT2                                                         ----- -------ARR10            <------NtERF2     <---------ARR14(2)                                  ------ --->At4g35610          <<<<<<<<<AtERF-4   --------->ARR14(2)                                  <----- ----At4g35610          <<<<<<<<<AtERF-3  --------->ATHB12                                     ====== -NtERF2            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             ------>MYB46(1) --->ZAT2      <---------ALFIN1  ------->TEIL                        --------->bZIP60(2)       ------ ----ZAT2    ------>ZmHOX2a(1)   <---------TOE2(3)                   --------->ANAC46 ------>MYB83<--   tctcctctttaaatcctccacattggcagctcatgaacgttgcaagattggccaattccatgaagtattccacatcaccacaaataccaagctcaaactt  3052400                                  <------MYB46(1)                                  <------MYB83                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ------>MYB46(1)                                 <---------DEAR3(1)                   -------->P                                <--------P                            ------>MYB83                         ================MYC_MYB              <----------DOF2                         --------->O2                     <---------MYB52(1)                         ==============MYC_MYB          <---------DEAR3(2)                         ================================================bZIP_DOF    ------>ZmHOX2a(1)    <---------TGA1a                <------MYB46(1)                            -- ---->DOF5.7(2)          <---------O2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         == --->TOE2(3)             --------->TGA1a                <---------MYB46(3)      <xxxxxxxxxxxxxxxxxxxx -----DOF2      --------------->AtSPL8                  <------MYB83  --------->MYB52(1)         ---- ==================================bZIP_DOF            <---------DEAR3(1)--------->LBD16         <--- --->TOE1(3)    <---------------AtSPL8                <---------ORA47(1)------->GAMYB       --------- ---------GT1 --------->YAB1   <-------GAMYB   ------>ZmHOX2a(1)     --------->MYB55(1)   <xxxxxxxxxx   taactccttcaagtattgatagtactcacttggggttggctctctcttcctccttggtcggtttcttttgccaaccggggctagtgtatcatccccgatg  3052500                                                                      ------->GAMYB                                                             --------->AtMYB61                                                             --------->TOE1(3)                                                        ------>ZmHOX2a(1)          <---------ZAT2                                                       --------->TOE2(3)          xxxxxxxxxxxxxxxx>smallRNA(se3)             <---------ICU4                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->ZmHOX2a(2)      <----------DOF2             ------->TEIL     ------->GAMYB--------->LBD16 ==================HOX2a_HOX2a                  <---------ZAT18   --------->MYB46(3) xsmallRNA(le3)  --------->RAP2.6(3)            --------->ZAT14   <---------MYB111(2) ----->ARR11(3) <---------WRKY18(1)             <---------ZAT14   <---------MYB55(2) ------ARR11(3)----------->HVH21              --------------->AtSPL8-------->P --------->LBD16 >LBD16     ------>ZmHOX2a(1)            <---------REM1(2)<---------ALFIN1<----------DOF2 xxxxxxxxxxxxsmallRNA(se3)      xxxxxxxxxxxxxxxx>smallRNA(i) --------->TOE2(3)<---------LBD16   atctcaacctcttcctcatgaccgcttcttcgaagactgcctcttcacggtgtacttcctcaacctcaacaaccctctttccccgagctacttcttctct  3052600                                                                                   --------->ANAC58                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                         <---------ANAC46                                                          <------ZmHOX2a(2)        --------->AtLEC2                       <---------ALFIN1                  --------->ARR11(3)        --------->ANAC58--                  --------->At4g35610                    <---------ARR11(3)     --------->WRKY18(1)--                  <---------At4g35610                   ------->GAMYB    <---------ANAC58          --             <---------ANAC58                        --------->MYB52(1)  <---------ANAC58          --             <---------ANAC58               <----------DOF2             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <---------ANAC46               --------------------->WRI1  ---------->ID1        <xxxxxx          <---------RAP2.6(2)              ------>ZmHOX2a(2)       <---------ARR14(2)        <-------         <---------At4g35610             --------->ARR11(3)        --------->ARR14(2)    <---------ATHB12         --------->At4g35610             <---------ARR11(3)------>ZmHOX2a(2)  <xxxxxxxxxxxxxxxxxxxxxx   taacatggctgagcggcttgagcttccacctagaatcaagcttgatctttgagcacaacgatcttggcaaatttggcgttcagtcatgccactcatgtca  3052700                              ------>ZmHOX2a(2)                             <------ZmHOX2a(2)                            <---------ARR14(2)                            <---------ARR14(3)                            --------->GLK1(2)                            <---------ARR11(3)                            --------->ARR11(3)                            --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             --------->At4g35610 ----->GAMYB                --------->ARR14(3)                                <---------MYB46(3) ------->ANAC58             <-----------ARR10                              <------MYB46(1) ------->ANAC58            <------ZmHOX2a(1)                              <---------AtMYB61      ---- ------->ANAC46     --------->MYB52(1)             <----------DOF2      <------------CBF         ---- xxxxxxxxxxsmallRNA(s) ------->GAMYB    --------->LBD16                *TSS<------MYB83--------->REM1(1) ----HVH21        <---------YAB1       --------->LBD16             --------->AtLEC2<---------At4g35610 xsmallRNA(se3)<---------MYB52(1)  -------->P  ------->TEIL       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   aacgcctcaacttcttcgttatcaacggaggatcttctaccccgagatgaactctttctccttgaatccatggagattggtggtgagcttcaacagggca  3052800                                              <----------DOF2                                    <---------GLK1(2)                                      <---------ARR14(2)                                    <---------ARR14(2)                                     --------->ARR14(2)                                    --------->ARR14(2)                                    <------ZmHOX2a(1)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                              ===========                        ---------->DOF2   <---------MYB52(1)                        --------->ALFIN1 ----->ANAC58       --------->GLK1(1)--------->ARR14(1)                        <---------AHL20(2) ----->ANAC58     ----------->GT1   --------->ARR11(1)                        --------->AHL20(2)   aacaagaacaactctccaaggggtatcaaagtggaatggattcggtttctttggtgatgaaattttgtgcttaaaaccgattaaatgtgtgaggatagac  3052900                <----------DOF2          ----------->GT1        ------>ZmHOX2a(2)                                   --------->ATHB12 ==============HOX2a_HOX2a      <---------REM1(1)          <---------ZAT6        ------->TEIL<-------   ttgggagtgatcgagtaactttggtgaagtattggtgaaggtgagaacgaattcttgaagagtgatagggagagtttgggatgaaacttttgaagctttg  3053000                                                                               <------ZmHOX2a(1)                              ---------->DOF2                             --------->ALFIN1                         --------->ICU4                    <---------ARR14(2)<---------ANAC46                 --------->ICU4                    --------->ALFIN1     <---------ANAC46     <xxxxxxx ---DOF2    ----------->GT1 <---------YAB1   ---------->DOF2           <---------MYB46(3)<----------DOF2   tgagagatagagaattgcaaaaatgagatgatgaaagagagagtttcaaaagggtttggcgaattcaattcaatgggtggaggagaatggtctttggttt  3053100                                                                               <---------ANAC46  ----                       <---------WOX13(1)                                     <---------LBD16    ----                      <---------ANAC46                                       <---------ANAC46    ----                    <---------YAB1                                          --------->ALFIN1<--------                  --------->TOE2(3)                                       --------->ALFIN1  <--------                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      <---------ZAT6    ---------  --------->HSFB2a(2)<---------MYB46(3)     ----------->GT1        ---------->DOF2       --------->ALFIN1  <---------HSFB2a(2)--------->ATHB12<------ZmHOX2a(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(se3)       --------->ALFIN1  <----------DOF2      <-----------RAV1(1)<-------   gtttttggaagagatagaaacgttgattggaaatggtgaggagcatgggtaatttctttgtccatcgagtaaaggagtgttgggggaataagtggggtca  3053200                                                         <---------HSFC1(1)                                                         --------->HSFB2a(2)    --------->ZAT14                                      <---------HSFB2a(2) ----->ANAC58                                     --------->YAB1 ----->ANAC46                                   --------->ANAC58                --------->MYB52(1) ----->ANAC58                                   --------->ANAC58 --------->ANAC55(2) -PCF2                 <---------ATHB51      <------ZmHOX2a(2)   <---------ANAC55(2) -bZIP60(1)            <---------AHL20(2)   --------->ARR11(3)   --------->ANAC58    --------->ALFIN1 >bZIP60(1)            <---------ATHB12---------->DOF2   --------->HSFC1(1)    <---------SPL7 ----HVH21             --------->AHL20(2)  <------ZmHOX2a(1)     --------->ANAC58--------->SPL7   cacaacttcactccttggtctccaaataattcaagctcgagtaaaggatcaagcatcttctagaattacgcattactcgatcgaacggtggagaattcnn  3053300  Previous    Next  AGI:  At4g06474.1    Description:  transposable element gene. retroelement pol polyprotein Range:  from: 3051192    to: 3052771    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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