Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------ARR11(3)     <--------P                                 <---------ARR14(2)    <-------GAMYB                                 --------->ARR11(3)   <---------MYB46(3)      ----------->HVH21          --------->ARR14(2)  --------->ALFIN1    ------>ZmHOX2a(1)  <---------YAB1            --------->YAB1 ---------DOF2         --------->AHL20(2)       <---------ATHB12                --------->MYB46(3) -------DAG2           --------->AHL20(1)      <-----------HVH21           ----------->GT1 ---->HVH21            <---------AHL20(2)<------ZmHOX2a(2)                <---------TOE2(3)  -------- --ARR10              --------->AHL20(2)--------->ARR14(2)             <---------YAB1  ------->TEIL   cctttcctgtgatagagctatcaattttattgaagtatcttcgatcccctatcatgtggttgctatctccattatcaaggtaacaaatgtactcatccac  2900500                       --------->ANAC58                       --------->ANAC46                       --------->ANAC58                       --------->ANAC55(1)                                            <-----------GT1                       --------->ANAC55(2)                                     <---------LBD16                       <---------ANAC55(2)   --------->ZAT6           <---------At4g35610                    <------NtERF2           --------->ZAT14         <---------WRKY38(1)   <---------ZAT14                  --------->ANAC58          <---------ZAT18         <---------WRKY12<-----------HVH21                  --------->ANAC58          <---------ZAT14       <-----------HVH21--------->ALFIN1                  --------->ANAC46          <-------TEIL        --------->DAG2<---------LBD16                <---------ANAC58            --------->ZAT18 --------->YAB1 <----------DOF2--------->ZAT14                <---------ANAC58        <---------------AtSPL8  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ->MYB46(3)<---------ICU4      <----------DOF2         --------->AtLEC2   <---------GLK1(2)   tgtgttcttctcatacttgctcggcacgcaattcttttcattcaagtacactacttcatgcatcataaggtcatcggcttctcgggtgtcactgttctct  2900600                                                          >>>>>>>>>MYB98                                                         --------->MYB52(1)                                                         ------>MYB46(1)                    ------->TEIL                                                         ------>MYB83                      <---------CCA1(2)                                                       <---------MYB59                  <---------TOE2(3)                                                       <---------MYB46(2)          <----------DOF2                                                    <---------ZAT18          <---------ANAC55(2)                                  <------ZmHOX2a(1) --------->ZAT18          --------->ANAC55(1)     <---------ARR11(3)   --------->ICU4        <------NtERF2                --------->ANAC58  --------->HSFB2a(2)  <---------AHL20(2)     <---------ANAC46               --------->ANAC46  <---------HSFB2a(2)  --------->AHL20(2)     <---------ANAC58               --------->ANAC58  --------->HSFC1(1) <---------ANAC55(2)      <---------ANAC58               --------->ANAC55(2)  <---------HSFC1(1) --------->ANAC55(2)     <-----------------------TaNAC69(2)<---------MYB52(1)   gtttctagagcttcttgcaacttaagtaattagtcaggacaattagaggcgtagtgacctaacttatcacatcgataacacgttacttttgatgtatctc  2900700                              <---------ALFIN1    ----------->HVH21                           --------->TOE2(3)  <---------At4g35610                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <-------GAMYB                        <---------ALFIN1      ------>ZmHOX2a(1)<-----------RAV1(1)  --------->YAB1 <-                   ------>ZmHOX2a(1)          --------->At4g35610          --------->ATHB12 ------>ZmHOX2a(1)      ----------->GT1<---------ALFIN1    <---------ANAC58    ------>ZmHOX2a(1)    <---------WOX13(1) >>>>>>>>>>>>>>>>>LFY--------->ANAC46    <---------ANAC58 XXXXXXXXXXXXXXXXXXXXX>MIR4221     =========   ttccaccattgttaaaacgtcctccacaacctctacctctgttccgtcctctgcgacctcttcctctgttgtattcttgattcgattgataatcctggtt  2900800                                  <<<<<<<<<TBF1                              <---------ARR14(2)                                     ------>ZmHOX2a(1)                              --------->ARR14(2)                                     <---------HSFB2a(2)                    ------>ZmHOX2a(2)                                                --------->HSFB2a(2)         <---------ANAC58     <-----------ARR10                                  --------->ARR14(2)         <---------ANAC58  <---------ANAC58                                      <---------ARR11(3)        --------->HSFC1(2) <---------ANAC58                                      --------->ARR11(3)        <---------HSFC1(2)<---------LBD16                                        <---------ARR14(2)  <---------ZAT14 <---------ARR11(3)                                            --------->RVE1(1) --------ANAC46   --------->ARR11(3) <<<<<<<<<TBF1                         ------>ZmHOX2a(1)    *TSS ==========================HOX2a_HOX2a                         <----------DOF2  --------->CCA1(1) <--   tgagtatagaagcttgccttgatcttcttgcggttcttcttcttctatgactcactcttcataaactttcagtcgtcctaaaatatcctcgaacatgtta  2900900                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                      --------->GLK1(1)        --------->ATHB12                              <---------HSFC1(2)             <---------ARR14(2)      <---------WOX13(1)                              --------->HSFB2a(1)            <---------GLK1(2)     <------------CBF               --------->HSFB2a(2)                              --------->ARR14(2)   <---------TOE2(3)                <---------LBD16   --------->HSFC1(2)            <------ZmHOX2a(1)   <---------YAB1                   <---------HSFB2a(2)                          <-----------RAV1(2)   <---------TOE1(3)          <---------AHL20(2)      <---------HSFB2a(1)  <---------WOX13(1) <------ -------ZAT6               ------->TEIL<------ZmHOX2a(1)                <---------YAB1<---------GLK1(1)   gtgttaagattgatggaactatgtgaatgaatttttttcgaggaagactcttaagaaatttcttcactagttttgtgatagactcaggattcccctagct  2901000                                                               --------->ARR11(3)                                                               <---------GLK1(2)                                                               <---------ARR11(3)                                                               <---------ARR14(2)                                                               --------->ARR14(2)                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                     --------->At4g35610                                                  --------->HSFC1(2) ----ANAC58            <---------ANAC46           <---------HSFB2a(1)               --------->ZAT18 ----ANAC58         --------->ALFIN1              --------->HSFB2a(1)               <---------ZAT18 ----ANAC46       --------->ZAT2                  <---------HSFC1(2)                <---------ZAT14 -->STY1(2)       <---------At4g35610     <---------HSFB2a(2)----------->ARR10      --------->ZAT14 ---STY1(2)       --------->At4g35610  --------->GLK1(2)  XXXXXXXXXXXXXXXXXXXX>MIR835-3P ---ZAT2          <---------ZAT2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   tgtatgagaagaagactgagagctggagggaagaaggcaagagtctgggagaagcttctgaagaagatactcaagagtggctagagtgcacaagagacac  2901100                                                                                                  ---                                                     <----------DOF2                              <--                                                  <---------ANAC58                               <---                                                  <---------ANAC58                               ----                         <---------YAB1      <-----------RAV1(1)                                 <---                  <----------DOF2            --------->ALFIN1                                 <------              <-------TEIL       <----------DOF2  <---------ANAC46                            -------     ---------->DOF2  <---------YAB1<---------AHL20(2)                               ---------->DOF2  <------ZmHOX2a(1)  --------->YAB1 --------->AHL20(2)              <---------YAB1  <---------AHL20(2)   tgaaggagaaagagggttcactttaatattgttgtcttttaattcaagtgttgcgttttatgtaagggttttgatacactctgtatttaaaggagggttt  2901200                          ------>MYB46(1)                          ------>MYB83                          -------->P                         --------->MYB55(1)                  --------->YAB1                  <--------HAHB4                  <---------ICU4                  --------->ATHB12                  -------->ATHB1                                            --------->ZAT2                 <---------ATHB12                                           ----------->RAV1(2)               --------->WOX13(1)                                           --------->At4g35610 <---------MYB52(1)     <---------MYB46(2)                                  <---------At4g35610 -------------->AGL1    <---------MYB59                                    --------->ARR14(2) ---------------AGL1    <---------MYB111(1)                                <---------ARR14(2) --------------AG--------->ICU4                                          <------NtERF2 ------------->AGL1     <---------MYB111(2)                             --------->RAP2.6(2) --------------AGL1    <---------ANAC55(2)  <-----------GT1           ------>NtERF2 ---GLK1(1)  ------>ZmHOX2a(1)         <---------YAB1            ------>ZmHOX2a(1) <------NtERF2 -->GLK1(1) --------->TOE2(3)     <---------ICU4            <----------DOF2------->TEIL             -   cccgtttagggcctcctcaatcattacctaccaaaaacattactattttctaatctctctctctttcctctcggccgcatctggcgcaatactatctccc  2901300                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                          --------->LBD16                                                                                         --------->ATERF1(2)                                                                                         --------->DEAR3(1)                                                                                        <------NtERF2                                                                                       ------>NtERF2                                                                                       <------NtERF2                                                                                       <---------ATERF1(1)                                                                                      <---------DEAR3(1)                                                                                      --------->DEAR3(1)                                                        <---------At4g35610           --------->ATERF1(2)                                                   <----------DOF2                    <---------ATERF1(2)                               <-----------HVH21  <---------ANAC58            ------------>CBF   <---                           --------->MYB52(1)     <---------ANAC58    --------->LBD16<---------RAP2.6(2)             <-----------GT1  ------->GAMYB<------------CBF        --------->ZAT18   *TSS<---------DEAR3(1)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ATHB12<---------MYB46(3) --------->ANAC46  ------ ----->ZmHOX2a(1)         <---------ZAT14<---------YAB1 <-------GAMYB----------->RAV1(1)--------->ATERF1(1)   tcctatttcttcttgttacactctcgagttaactgtcaagtttatcattggtgctttcagttgttagagtcccccataaacacaatggccgccggtgaag  2901400  Previous    Next  AGI:  At4g05592.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.7e-43 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family) Range:  from: 2899551    to: 2900896    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g05593.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 4.9e-10 P-value blast match to GB:226407 retrotransposon del1-46 (Gypsy_Ty3-element) (Lilium henryi) Range:  from: 2901385    to: 2903412    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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