Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                             --------                                                                                             --------     --------->ZAT2                                                                          --------     --------->At4g35610                                                                 --------->LBD16    --------->GLK1(2)                                                                 --------->MYB52(1) ----->ANAC58                                             --------->ZAT6              -------->P ----->ANAC58                      ---------->DOF2      ------>MYB46(1)             --------->ETT(2) --NtERF2                       --------->ETT(1)   <-----------GT1           --------->GLK1(2)     -- >NtERF2                     <------MYB83<-----------GT1------>MYB83        --------->ARR14(2)   <--- -->ETT(2)                   <------MYB46(1)   --------->TOE2(3)            <---------ARR14(2)<------ ---->HVH21             *TSS--------->MYB59    --------->TOE1(3)           <------ZmHOX2a(1)<--------P ---DEAR3(1)            <---------AHL20(2)     <----------DOF2          <---------LBD16<---------LBD16   cggaagaagctggaaaacgattttgtttatttggtcggaaagtttacaactttaaaccttccactaggttttcttcaggaatcgggtctaccgggttgac  2745700         ------>MYB83         --------->ANAC58      --------->MYB46(3)     -------->P    --------->MYB52(1) ->WRKY38(1) ->WRKY12------>MYB46(1)                                   <----------DOF2 --->HVH21            ----------->RAV1(2)               <---------MYB52(1) ->WRKY45--------->ANAC58                             <---------ANAC58 ------->LBD16       -------->P<---------TOE2(3)      <---------ANAC58             --------->AHL20(2) ------LBD16      <---------ANAC58            <-----------GT1                      <---------AHL20(2) ---WRKY18(1)     <---------ANAC58           --------->AHL20(2)---------->DOF2   <----------DOF2-----   ccggactaaccaagcccatgacttacctggtctatggtttgagcccattaactatttcgttcttttaaagcagaaacttgggcctttaatttgtagagcc  2745800                                                                                  ----------------->AGL1                                                                                  ===================                                                                            <---------ANAC55(2)     -            ----------->GT1                                                 --------->ANAC55(2)------           --------->DEAR3(2)                                               --------->ANAC58  <------          --------->SPL7   <------MYB46(1)                                  --------->ANAC58---------          --------->ARR14(2)                                           <---------------AtSPL3 -------     --------->MYB52(1)    <------MYB83                                <---------------AtSPL8--------     -------->P           --------->MYB59                   <---------GLK1(1)     ----------------->AG    --------->MYB52(1)<---------TOE2(3)--------->GLK1(1)    --------->GLK1(1)  ---------->DOF2<------ ---->DEAR3(1)<---------MYB52(1)       <---------GLK1(1) <---------YAB1--------------->AtSPL3<-------   gaagactaaccggaccgtcaatttaagtttggttcaatccgatttctgaatttttggttctgatttctgaagagtagtacgtaaaccgaattgggagatt  2745900 ===============MADS_MADS                                                         --------->LBD16 -------------->AGL15                                                           <---------LBD16 --->GLK1(2)                                                                --------->HSFB2a(1) ---ARR14(2)                                                                <---------HSFC1(2) -->ARR10                                                                   --------->HSFC1(2) -->ARR14(2)                                                                <---------HSFB2a(1) ->HSFB2a(1)                             <-----------------AGL1      --------->ARR14(2) ---GLK1(2)                       <---------ANAC46        <-----------GT1  <---------YAB1 <---------AHL20(2) --HSFB2a(1)<------------MYB.PH3(1) <---------ZAT6<---------MYB52(1) <---------ARR14(2)   --------->AHL20(2)   ctcttatttcagtaacagtttaatacagtttttgtttagtgttttcaatttcggtattttttacaaactcgaatcggatgattccggtttaataaaatca  2746000                                                                                               ------                                                                                               ------                                                                                               ------                                                                                             --------                                                                                             ------->GAMYB                                                                                             --------                                                  ------>MYB46(1)                            --------                                                  --------->ARR14(2)                         --------                                                  ------>MYB83                              ---------                                                  <---------ARR14(2)                        ---------                                               --------->ANAC46                             ---------                                            <---------ZAT14 ------>MYB83                   ------>MYB46(1)            <---------At4g35610             --------->ZAT14 ------>MYB46(1)                ------>MYB83            --------->At4g35610     --------->TOE2(3)   --------->SPL7                   --------->DEAR3(1)      <------MYB83 --------->AHL20(2)<---------YAB1   --------->LBD16              --------->AtMYB61      <------MYB46(1)            <-----------GT1<---------MYB59           <------------CBF--------->ORA47(1)     --------->MYB59            <---------AHL20(2)--------->MYB52(1)   ------------>CBF --------->DEAR3(2)   aatgagttcggtttagctgaatttaaaactgtttttaatcttatagtataccgaaccggaccatccatctaatttcaattgtctaccaaaaccgaccgac  2746100  <----------DOF2 -->P >MYB83 >MYB46(1) ->MYB46(3) ->DEAR3(1)                 <---------ANAC58         <---------ANAC58 ->DREB2C(2)                <---------ANAC46    <----------DOF2 --->HVH21           <------------------------ANAC81 <---------ANAC58                        -------- >DEAR3(2)        *TSS      <---------ANAC58 ------>NtERF2                          --------->AHL20(2) >SPL7 --------->ETT(2)<<<<<<<<<TBF1        --------->DEAR3(1)                    <<<<<<<<<MYB98 >MYB46(3)        <----------DOF2      <-----------GT1<----------DOF2            --------->TOE2(3)   cagtctttgtcgaaagttgtctttcttcttccttgttcgattttcgcctcctttggcttttcattctctctctaacttctctatgttaaaattccgaaag  2746200                             --------->PCF2                             <---------ZAT18                             <---------PCF2                             --------->PCF5                             <---------PCF5                       ------>ZmHOX2a(1)                 --------->HSFB2a(1)                 --------->HSFC1(2)                 <---------HSFB2a(1)                                ---------->DOF2  --------->At4g35610                 --------->At4g35610                         --------->LBD16         <---------At4g35610                 <---------HSFC1(2)                         <---------LBD16     --------->At4g35610            <---------HSFB2a(2)          ---------->DOF2   ----------->RAV1(2)  <---------At4g35610            --------->HSFB2a(2)     <---------ANAC46       <---------ANAC46   <---------------------WRI1 -->DOF2--------->GLK1(1)    --------->ZAT18               <---------LBD16   <------ZmHOX2a(1)   ctcgattcagaaatctagaagcttcctcgagggccctcgcgtagaaagtcgaactcaaattccctggagacaaagaagaggaagatgagctcatggaact  2746300                    ------>MYB46(1)                    ------>MYB83                    -------->P                                                          --------->ANAC58                    ==========================MYC_MYB                                   --------->ANAC46                  --------->DEAR3(1)                                                    --------->ANAC58                 --------->MYB46(3)                                                  <---------SPL7                 --------->DEAR3(2)      <-------GAMYB                              <---------ANAC58               --------->MYB52(1)       <---------ANAC58                            <---------ANAC58        <---------At4g35610             --------->MYB52(2)                         <---------------AtSPL3      <---------RAP2.6(2)               <---------ANAC58                          <---------ANAC46      <---------ANAC55(2)           =============MYC_MYB                        <-----------HVH21      --------->ANAC55(2)           <---------TGA1a                        <---------YAB1     --------->RAP2.6(3)            --------->TGA1a                --------->At4g35610 --------->SPL7     <---------At5g28300  <-----------HVH21                       <---------ARR11(3)<---------ANAC46    <-----------GT1--------->ORA47(1)  <---------TOE1(2)     ------>ZmHOX2a(1) <-----------RAV1(1)   acgttgttacggctcacaaaccgaccagtgtcactcactcgtgcgttggcaacttcacaagtcctcaagagctcaatctcattgtcgcgtacgaaactct  2746400     --------->TOE2(3)   -------->P                                           --------->ZAT2    <---------TOE1(3)   ------>MYB46(1)                          <----------DOF2   --------->ATHB12                <------   ------>MYB83  <---------YAB1            <---------DAG2 <---------MYB46(3)            <---------GLK1(1)  <---------ALFIN1                      <---------ZAT18 <---------ZAT2    <---------TOE2(3)  -------- <---------MYB111(2)             --------->WOX13(1)     --------->At4g35610            ------->TEIL <---------MYB111(1) <---------DAG2    ---------->ID1   <---------At4g35610         <---------ATHB12-   ccccctacctctatttgttatcaatttttgtttgtcaattagtccccttttgaattgcagctgttgatttgggtttagggttttcaatgaatttcccatc  2746500                       ------>MYB46(1)                      <---------ALFIN1                                        <---------AHL20(2)                   <-----------GT1                                            --------->AHL20(2)          --------->YAB1 <----------DOF2                                  <------ZmHOX2a(1)   <---------AHL20(2)--------->MYB46(3)                                 <---------TOE2(3) -----HVH21  --------->AHL20(2)                                        --------->YAB1 ->ANAC46<---------YAB1------>MYB83                           <---------At4g35610 ---------->GT1   <-----------GT1--------->YAB1               --------->At4g35610              <-----   acgagttaattttcataaatttacccactttgcaaacaaaattgtagttcaatttcagtttgggagatgactataaggattttaatgcctctgggttctt  2746600  Previous    Next  AGI:  At4g05410.1    Description:  transducin family protein / WD-40 repeat family protein. similar to EMB2271 (EMBRYO DEFECTIVE 2271), nucleotide binding [Arabidopsis thaliana] (TAIR:AT4G21130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40414.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 2742929    to: 2745624    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g05420.1    Description:  DDB1A (UV-damaged DNA-binding protein 1A); DNA binding. Identical to DNA damage-binding protein 1a (DDB1A) [Arabidopsis Thaliana] (GB:Q9M0V3;GB:Q8VY31); similar to DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) [Arabidopsis thaliana] (TAIR:AT4G21100.1); similar to DNA damage-binding protein 1 (UV-damaged DNA-binding protein 1) (GB:Q6E7D1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40391.1); similar to DNA damage-binding protein 1 (UV-damaged DNA-binding protein 1) (High pigmentation protein 1) (GB:Q6QNU4); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain Cleavage and polyadenylation specifici Range:  from: 2746118    to: 2752940    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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