Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------ANAC58      <---------ANAC58                         <---------HSFB2a(2) ----->MYB83                                   --------->HSFB2a(2) -------->MYB52(1)                           <---------At4g35610 ----->MYB46(1)                              --------->At4g35610                                  --- -------MYB59                                ----------->RAV1(2)                                 ---- ----WRKY18(1)                          ------>ZmHOX2a(2)                                        <--- -->WRKY38(1)                         <---------ARR11(3)                                         ---- -->WRKY45                            --------->ARR11(3)        --------->ANAC55(2)             <---- -->WRKY12                        <---------ANAC58          <----------DOF2                     ----- >At4g35610      --------->CCA1(2)<---------ANAC46         --------->TOE2(3)        <---------AHL20(2) -At4g35610 ---------->DOF2       <---------ANAC58         --------->TOE1(3)        <-----------GT1   ccaaactgtcttggtaaagacatgagcaagactatggcttgatcttcatctgggactacaacctttacgttttccaagtccgatattaacttgaagaaat  2647700  <---------TOE2(3)  <---------YAB1                                                                               <----- ------>TOE2(3)       --------->ARR14(2)                      --------->AHL20(2)               ------ ----->ATHB12         <---------GLK1(2)                     --------->ANAC58              --------->ICU4 ------ICU4           <---------ARR14(2)                <----------DOF2          <---------ARR11(3) ----->YAB1      <-----------TGA1                     --------->At4g35610        --------->ARR11(3) -----ATHB12    --------->YAB1               --------->SPL7 --------->ANAC58     <---------GLK1(2) ---->ICU4 ------>ZmHOX2a(1)               xxxxxxxxxxxxxxxx>smallRNA(s)         <---------RVE1(1)   cattaacattctcctccatcgtcatattctcactcatcttgtagccatacagcctctgcttcaagtaaatgcgatttggaagagattttgccataaataa  2647800                                                                                                   ==                                                                                                   ==                                                                                                   --                                                                                             <-------                                                                                            <--------                                                                                        ------>ZmHOX2a(2)                                                                                        =============                                                                                        =============                                                                                       --------->CCA1(2)                                                                                       ==============                                                                                       ==============                                                                                       <------ZmHOX2a(2)                                                                                      --------->ARR11(3)               --------->YAB1                                                         <---------ARR14(2)          <---------DAG2                                                              --------->AGP1       <---------ARR11(3)                                                             <---------AGP1      <------ZmHOX2a(1)                                                               --------->ARR14(2)    xxxxxxxxxxxxxxxx>smallRNA(i)                                                      <---------ARR11(3)    --------->LBD16                                                                 ----------->ARR10   --------->HSFB2a(2)                                                             <--------P<-------   <---------HSFB2a(2)   <---------At4g35610                                  xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxx>smallRNA(i)                                               <---------YAB1 <--------  ------>ZmHOX2a(2)      --------->At4g35610                                <xxxxxxxxxxxxxxxxsmallRNA(i) ------GT1<----------DOF2--------->ZAT2       <----------DOF2   <-----------GT1 <---------YAB1  ----- --->MYB52(1) <---------YAB1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxx>smallRNA(s)   ctgatccaggacctttatcatacatgctgctgtcttctgtttgatgacctttctcagaacattgtttcacaggctcaagatgatggtagatctggctttt  2647900                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <-----------ARR10               --------->ARR14(3)               --------->GLK1(2)               <---------ARR14(2)               --------->ARR14(2)               <---------ARR11(3)               --------->ARR11(3) <----------DOF2<------ZmHOX2a(2) ======================HOX2a_HOX2a =======================HOX2a_HOX2a ---->ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --DAG2        <---------ARR14(3)                                                                  <- -ANAC58       <---------AGP1                                                                  ------ =====HOX2a_HOX2a    ---------->ARF1                                                  --------->ARR14(2) ====================HOX2a_HOX2a                                                      --------->GLK1(2) ====================HOX2a_HOX2a                                                      <---------ARR14(2) =====HOX2a_HOX2a------>ZmHOX2a(2)            <---------LBD16                         --------->ARR11(3) ---DOF2      <------ZmHOX2a(1)             --------->GLK1(2)      --------->ZAT6    <---------GLK1(2) -ANAC58<----------DOF2                    <---------ARR14(2) ------>ZmHOX2a(1) <---------MYB46(3) -- ----->ID1  <---------TOE2(3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->TOE2(3)   -------   cctcttttttctttgaggatcttgtcttccagtttagaagttgcagtttctgggtcttggtttcctccatcactaatctcagtggtagaatcttcaacct  2648000                          --------->LBD16                --------->LBD16               --------->ANAC46     ------>ZmHOX2a(1)   <---------HSFB2a(2) --------At4g35610       --------->HSFB2a(2)         ----------->GT1 --->AtMYB61   --------->LBD16        --------->ARR11(3) ------->At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <----------DOF2          <---------ALFIN1 -->MYB46(3)  --------->LBD16         <---------ARR11(3)   <---------DAG2<------ZmHOX2a(1) --------->LBD16   ctgcttcctcttcttccccgagaccctccagaagtcccaacatctccatatgagccagtaacttttctttccacaggatgtaatccccatctccgtcgaa  2648100                                      ==================HOX2a_HOX2a                                      ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)                                     ===================HOX2a_HOX2a                                    <---------ARR14(3)                                    --------->ARR11(3)                                    <---------ARR14(2)                                    <-----------ARR10                                    --------->ARR14(2)                                    --------->AGP1<---------TOE1(2)                                    <---------AGP1<---------TOE2(2)                    <------ZmHOX2a(1)                  --------->LBD16  <---------ARR14(1)                         --------->MYB52(1)                 <---------HSFB2a(2)--------->ARR14(3)                        ------>MYB83--------->YAB1                 --------->HSFB2a(2)<---------ARR11(3)                      <---------MYB46(2)               ------>NtERF2       <---------CCA1(2)              XXXXXXXXXXXXXXXXXXXXXXX>MIR829.1          <---------ZAT14       <---------At4g35610               XXXXXXXXXXXXXXXXXXXXX>MIR845B     -          --------->ZAT14       --------->At4g35610         <---------LBD16 <---------MYB59   <------      --------->AtMYB61       *TSS----------->ARR10        ----------->RAV1(2)------>MYB46(1)<-------   <---------ALFIN1      --------->ARR11(3)      ------>ZmHOX2a(1)--------->At4g35610 --------->ICU4<   cttctccacctctgctctgcccgaagacatcttgagcagatcttcttgctcctaggtagtaacctggaagctctaataccaaactgtgaggattataacg  2648200                                                    <---------ATHB12                                                <---------ZAT18                                                --------->ZAT18                                                --------->ZAT14      --------->ARR14(2)                                             <---------MYB46(3)      <---------ARR14(2)                                            <---------MYB52(1)     --------->LBD16               ----                                           <-------GAMYB          <---------ANAC55(2)            <--- -------->HSFB2a(2)                       <-----------RAV1(1)     --------->ANAC46     --------->ANAC46 ---TOE2(3)                         ------->GAMYB   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <------ZmHOX2a(1) ----GT1   <----------DOF2        --------->At4g35610            <---------LBD16      <xxxxxxxxxxxxxx ---------HSFB2a(2)               <---------At4g35610    ----------->GT1   ---------->DOF2 xxxxxxxxxx   ttctcgagttgtactttgtctaatctcagacctctcaactcactctgttgttcactcatttgtaaaatgcggaacttgaaagtaagaacacacaggaatt  2648300                                                    --------->ARR14(2)                                                    <---------ARR14(2)                                              <---------LBD16                                          ------>ZmHOX2a(2)                                        <---------ARR14(2)                                        --------->AGP1                                        --------->ARR14(3)                                        --------->ARR11(3)                                        <-----------ARR10                                        --------->ARR14(2)                                        <---------ARR11(3)                                       --------->GLK1(1)                                      ----------->ARR10                                     ------>NtERF2 --------->GLK1(1)                           ------         --------->ARR14(2)         --------->DEAR3(1)                                       --------        <------ZmHOX2a(1)   --------->O2<---------ARR14(3)    --------->ARR11(3)       <---------TOE1(3) ----->MYB52(1)             --------->ANAC46  <---------HSFB2a(2)                      <---------TOE2(3) --------GT1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <---------GLK1(1)               <----------DOF2 xxxxxxxxxsmallRNA(s2)      --------->TGA1a   --------->HSFB2a(2)       <---------CCA1(2)    <------- xxxxxx>smallRNA(i)        --------->SPL7<------ZmHOX2a(2)    <---------ARR11(3)  <----------DOF2  <-   aacgagttcaggattcaaacttgaatccctacgtctcgccgagatcttctcggaaatccactaagaacttgctcttatcttgagcctttagggttctaca  2648400                                                                                                <----                                                                                              -------                                                                                              <------                                                                                              -------                                                               ---------->DOF2                -------                                                       -------->P                             -------                                                       ------>MYB83                    <---------ZAT6                                                       ------>MYB46(1)             ------>ZmHOX2a(2)                                                    <---------MYB55(2)            <------ZmHOX2a(2)                                                    --------->MYB46(3)           --------->GLK1(2)                                                    <---------MYB52(2)           --------->ARR14(2)                                                   --------->ANAC46              <---------AGP1<-----                                                   --------->ANAC58              --------->ARR11(3)                                             ----------->RAV1(1)                <------ZmHOX2a(1)       <----------DOF2                  ----------->RAV1(1) <---------------AGL15<---------ARR11(3) --->REM1(1)                         --------->ANAC58--------->AtMYB61         <---------HSFC1(2)  -- ->HSFB2a(2)                         --------->ANAC58------->GAMYB       ---------->DOF2  --------->WRKY38(1) --HSFB2a(2)<-----------GT1        ---------->DOF2 --------->ANAC58<----------ID1<---------ARR14(2)-- ---------DOF2             <---------ALFIN1 --------->ANAC46<----------DOF2    --------->HSFC1(2)<---   actttctctctttgttacaaacttctctcacaccttacaaagcaacacaacacaaccaactcctttaaagagacaaaaagaaggatctagagttgcccga  2648500                                    <---------At4g35610                                    --------->ZAT2       <---------ANAC58             <---------ZAT2                                <---------WOX13(1)       <---------ANAC58             --------->At4g35610                         --------->ATHB12     <---------YAB1               <-----------RAV1(2)                         <----------DOF2 -----REM1(2)              <---------ZAT2                                    <---------ANAC58 -->ANAC58                 --------->At4g35610                               <---------ANAC58 ---ETT(1)                 <---------At4g35610                               <---------ANAC46 -->ANAC58             <-----------HVH21                                    <------NtERF2 ---->HVH21           --------->ANAC58                                     <---------RAP2.3(1) -->ANAC46  ------->TEIL <-----------RAV1(2)  <---------ANAC58             ------>NtERF2 <-----------GT1 ----ALFIN1<---------CCA1(2) --------->ALFIN1 --------->ANAC55(2)         <---------RAP2.3(3) ------->ANAC58       --------->ANAC58        <---------ANAC55(2)         <---------RAP2.3(2)       < ------->ANAC58       --------->TGA1a         <---------ANAC58            <---------DEAR3(1)     <--- ------ALFIN1         --------->ANAC46       <---------LBD16              <---------RAP2.6(2)    xxxx   cacgctcatgcttgaatcttacacaagtcaggtgctccagctgcaattacgggcctgaattgctgcaatctcttaggcggcttgattgaagaaaccattc  2648600  Previous    Next  AGI:  At4g05133.1    Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 2644055    to: 2648130    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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