Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <---------TOE2(3)                                                               --------->YAB1                                                             <---------WOX13(1)                                                            <---------ARR14(2)                                                           <------NtERF2                                                         <---------ANAC46                                                        --------->ATERF1(1)                                                        <------NtERF2                                                        <---------LBD16                                                        <---------At4g35610                                                       <---------RAP2.6(1)                                                       <---------RRTF1(1)                                                       <---------ERF1                                                       <---------RAP2.3(1)                                                       <---------ATERF1(1)                                                       ------>NtERF2                                                       <---------ORA47(2)                                                      <---------ANAC46                                                      <---------ANAC58                                                      <---------ANAC58                                                      <---------RRTF1(3)                                                      <---------RAP2.3(3)                                                      <---------RRTF1(2)                                                      <---------RAP2.3(2)                                                      <---------RAP2.6(2)                                                      <---------DEAR3(1)                        <----                                                      <---------ATERF1(2)                    <-------                                                      --------->ATERF1(2)                  ----------                                  ----------->HVH21   <---------DREB2C(2)                  ------>NtERF2                                <---------At4g35610  <---------ABI4(1)                    -----------                                --------->At4g35610  --------->ATERF1(1)                  --------->ETT(2)                              <-----------RAV1(2)    <------NtERF2                   ------>ZmHOX2a(1)                            ----------->RAV1(1)  <---------ANAC58                   --------->TOE1(2)                       ------>ZmHOX2a(2)         <---------ANAC58                   --------->TOE2(2)       <-----------RAV1(1) ----------->HVH21     ------>ZmHOX2a(2)                <---------ATHB12   <----------DOF2    <------ZmHOX2a(2)        --------->ARR14(2)          <-----------GT1--------->ANAC46 ---DOF2             --------->ARR11(3)        <---------ARR14(2)<---------YAB1  --------->ARR14(2)<-   atcggcgttttgttggaagaagcgatctcgcgacagatgacatagaagggatcgtggcggcggattgatgatggttttgacccaatccttcgacgacagg  2591800      <---------ARR11(3)      --------->ARR11(3)                                                                         <---  ----------->GT1              ------->TEIL                            >>>>>>>>>TBF1           ------ --ZmHOX2a(1)               <---------YAB1                    --------->HSFB2a(2)            <------- ----RAV1(2)            <---------WOX13(1)                    <---------HSFB2a(2)            <------- ->RAV1(1)         <---------ANAC58            <---------At4g35610  >>>>>>>>>TBF1          <------ZmHOX2a(1) >HVH21            <---------ANAC46     <---------YAB1  <---------ARR11(3)                <----------ID1 -----ZmHOX2a(1)   <---------ANAC58  --------->ICU4     --------->ARR11(3)         --------->AtLEC2 -   aggaccgtgatattgaaaatggcgagattgatgaatgtaattttgatttagatgagaagatgttacagaagaagaagaagtagccatggaagaggacgag  2591900                                                                     <---------At4g35610                                                                    --------->GLK1(2)                                                                    <---------ARR14(2)                                                              --------->MYB52(1)                                                             --------->AtMYB61                                                            --------->MYB46(3)                                                         --------->WRKY38(1)         --------->ZAT2                                  --------->ETT(2)                    --------       <------ZmHOX2a(1)                                 <---------ETT(2)              <---------DOF5.7(2) ---ZmHOX2a(1)                                           --------->DEAR3(1)          <---------MYB52(1) --->ALFIN1                                              --------->WRKY12            --------->DOF5.7(2) --TOE1(1)<---------ANAC58                          --------->MYB52(1)           ------>ZmHOX2a(1) --TOE2(1)<---------ANAC58                          <---------ALFIN1--------->ARR14(2) ---------->DOF2 -------->At4g35610                                <---------ALFIN1<---------GLK1(2)<-------GAMYB   gaggctgaaggagcttgggaattagagtttcgaaatggaagtttgaatttgccccaacgtcgaccatcggaatctgatttgtcctccgttaaagccatcg  2592000       --------->ANAC58       --------->ANAC58                         <---------ZAT6                   --------->ALFIN1      --------->SPL7             <---------ARR14(2)                            <---------ANAC46    <---------SPL7               --------->ARR14(2)                         ----------->HVH21 --------->GLK1(2)        ---------->DOF2   <--------P                    <---------At4g35610 --------->ARR14(2)   <------ZmHOX2a(1)<---------WOX13(1)          ---------->DOF2 <---------ARR14(2)  --------->ICU4  --------->ATHB12  <---------YAB1     --------->At4g35610      -- ->MYB52(1)          ----------->GT1<---------YAB1     <---------AHL20(2) ----------->RAV1(2)     ---   gagaatcggacgcgagagagggaaggattaaagtggatttgattgggttagtgtttttttattaagcgagaaagtcatctgaagtggagaagaagatgaa  2592100                                                                              <------------CBF                                                                             --------->ATHB12                                                                            <---------ZAT6                                                                       <---------REM1(1)                                                                     <-------GAMYB<---------ANAC58                                                                    --------->MYB111(2)      --------                                                   ---------->DOF2  --------->MYB55(2)      ---------                                    <---------ANAC58                <---------MYB46(3) --------->HSFB2a(2)                                    <---------ANAC58              <---------ANAC58<---------ANAC58---                     <---------ANAC46      <---------ARR14(2)     <-------GAMYB<---------WOX13(1)----                     <---------ANAC58      --------->ARR14(2)*TSS <---------ANAC58<---------ANAC46---           <---------ARR14(2) <---------YAB1--------->ARR14(1)   <---------MYB46(3)    <---------HSFB2a(2) ------->At4g35610   <---------ANAC58      <---------GLK1(2)<----------DOF2 <---------YAB1  --------- -------->GT1        ----------->GT1<---------ANAC46        <---------DAG2  --------->ICU4---------->DOF2   gagctaaaacgcagatagtaatagcgtttaatacgatagcgtttggattcgcttaaagcttactttttggttgttgtagtgattgcgttctgaaaagcaa  2592200                                                                                                   <-                                                                                                   --                                                              --------->ARR14(2)                  ---                                                              <---------ARR14(2)                  ---                                                            <---------DEAR3(2)                    <-- --------->MYB52(1)           <---------ANAC58             --------->ETT(1)                       --- ---->CBF                  <---------TOE2(3)             <-----------HVH21                        --- >ANAC58             --------->AHL20(2)            --------->ARR14(2)                             <-- ------>YAB1    --------->ANAC58                   <------------CBF                       <---------ANAC46 ------->TBP    --------->ANAC46             <---------ARR14(2) <-----------RAV1(2)      <-------TEIL ------>AHL20(2)--------->ANAC58             --------->ARR14(2)<------ZmHOX2a(2)      <---------ANAC58 >ANAC58      --------->ZAT6  <---------ANAC58     <---------ARR14(2)<-------TEIL     <---------ANAC58   taaaaacggttgagttacactcaaaaaataaggcttgggtttttgggtattcggattggggtcggatcaggttcgagtcgagttttttgggttcgggtat  2592300                   <-------TEIL                 --------->ARR11(3)                 <---------ARR11(3)                 <---------ARR14(2)       <-------GAMYB                 --------->ARR14(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 --------->AGP1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------------AGL15                     ----------->GT1     <---------YAB1 ------------->AGL15                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------------->AGL1                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------------->AGL2                   <---------ANAC58     --------->AHL20(2) --------->ZAT6 ---------------AGL2       <---------ARR14(2)     --------->DOF5.7(2)     <<<<<<<<<<GATA-1        <-- -------------->AGL3       --------->ARR14(2)     <---------MYB52(1)     --------->GLK1(1)       <--- -------------->AG<------ZmHOX2a(2)    <---------ANAC58     <---------AHL20(2) --------->ANAC46  ---- ---------------AGL3       --------->ARR11(3)    --------->TOE2(3)       <---------GLK1(1)  <--------   tccaaatttagaaatctaagatccattcggatattgtaagggggtgttattcgttaatggattttaatagaattgaaatccacactaatccactgttatt  2592400                                                                                  <---------ANAC58                                                                                  <------MYB46(1)                                                                                  <---------ANAC46                                                                                  <------MYB83                                                                                  <---------ANAC58                                                                                 --------->MYB46(2)                                                                                 <---------AtMYB61                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx     -------->HAHB4                                                            xxxxxxxxxxxxxxxxxxxxxx     <---------ICU4                                                    --------->GLK1(2)         <---     <--------ATHB1                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------YAB1                                          <---------YAB1     xxxxxxxxxxxxxxxxxxxxxx    <---------ATHB12                                      --------->YAB1      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->ICU4                <---------YAB1         <---------ATHB12     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------TOE2(3)            <---------ZAT6   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            ------  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------GLK1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <--- ---------GT1                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------GLK1(2)     --------- ------AHL20(2)           --------->GLK1(2)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------ZAT6 ----->AHL20(2)           --------->ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->MYB111(2)- -MYB52(1)          <----------DOF2--------->ATHB12 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------AHL20(2)   taactaatgattctaaatccagctttaaaatctagtgttattggaactcatatttgtaaatcatgcttaatagattctaaagtttggtgttattcaatta  2592500        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           --------->ATHB12 xxx>smallRNA(le3)                                                  <---------WOX13(1) x>smallRNA(si3)                                                  --------->ATHB12 x>smallRNA(le3)                                                  <---------AHL20(2)       <xxxxxxxxx x>smallRNA(si3)                                                 <---------AHL20(2)     <----------DOF2 x>smallRNA(i2)                                                  --------->AHL20(2)  --------->ARR11(3) ------TOE2(3)                                                  <---------AHL20(2)   <---------ARR11(3) x>smallRNA(s2) --------->AHL20(2)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->YAB1       <---------AHL20(2)                   --------->ARR11(3)          ---------->DOF2 <--- ------YAB1  --------->TOE2(3)                       <---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >WOX13(1) <---------AHL20(2)                 <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  < -------->CCA1(2)                       ---------->DOF2    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxx   agatttgaaatatttcattaaaatccaatgttattcaaaactaaaagacttttaaaatctttgtatattaattgatttgaaatgaaagctctttggagtt  2592600                                          <---------GLK1(2)                                          --------->ARR11(3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          <---------ARR11(3)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------AHL20(2)          <---------RVE1(1)             --------->AHL20(2)         ----------->ARR10           <---------YAB1           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->TOE2(3)         <xxxxxxxxxxxxxxxxsmallRNA(i)         --------->ANAC58         --------->YAB1      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)         --------->ANAC46         --------->ATHB12    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->ANAC58        <---------ATHB12   --------->ANAC58         <-------TEIL<---------GLK1(2)  ----------->GT1    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->AtLEC2---------->DOF2 xxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->TOE2(3)               -- ----TEIL<---------ICU4    --------->ANAC58       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         ------ ---------YAB1    --------->YAB1<xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxx>smallRNA(se3)--------->ANAC46--------->GLK1(2) --------->YAB1       <xxxxxxxxxxxxxxxxxx   tcatgagtaaatcattaaaatcaaaatccaagacatattgcagagattttgaaattcatacaaacatattcttaaaagcaatatcagaaaacaaatctaa  2592700  Previous    Next  AGI:  At4g05060.1    Description:  vesicle-associated membrane family protein / VAMP family protein. similar to vesicle-associated membrane family protein / VAMP family protein [Arabidopsis thaliana] (TAIR:AT4G21450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40467.1); contains InterPro domain PapD-like (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) Range:  from: 2590063    to: 2592161    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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