Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------MYB59                 --------------->AGL15                --------->ANAC55(2)       <---------DEAR3(2)    <---------AHL20(2)           ------->GAMYB                   --------->At4g35610      <---------TOE1(2)      --------->AHL20(2)           --------->TOE2(3)    <---------AHL20(1)     --------->ALFIN1    <---------AHL20(2)               --------->YAB1       <---------AHL20(2)   <---------ANAC46   --------->AHL20(1)                 --------->MYB46(3)    --------->AHL20(1)   <---------ANAC58------>MYB46(1)             <---------AHL20(2)             --------->YAB1       <-   <---------ANAC58------>MYB83  --------->AHL20(2)   --------->REM1(1)      <---------YAB1       --- --------ARR14(2)<---------MYB111(1)       <---------AHL20(2)              <---------ZAT6 <---------At4g35610 ----LBD16      <---------ANAC55(2)        --------->AHL20(2)         --------->YAB1 <-----------GT1 --ARR10  <-------TEIL<---------AHL20(1)  --------->AHL20(2)         <---------YAB1 <---------AHL20(2)   ggatagcgtgggttcaatacctaatatataaaaaattaaaacaaaaaaatttatctacaaccaaaatttgtattatagtattatattttatcagctaaac  2562700                                                                         <---------AHL20(2)                                     <---------ZAT18                     --------->YAB1                           <---------AHL20(2)                          <---------AHL20(2)                      --------->ARR11(3)                               --------->AHL20(2)                      <---------ARR11(3)                               <---------YAB1                     --------->CCA1(1)                                --------->YAB1                     <---------RVE1(1)                           --------->ICU4                     --------->RVE1(1)                           <---------YAB1                     <---------CCA1(1)                        <---------YAB1<---------ICU4                     <---------GLK1(1)                       --------->AHL20(2)                     --------->GLK1(1)                       <---------AHL20(2)            <---------AHL20(2)       --------->ZAT18         <---------AHL20(1)           -----------            --------->AHL20(2)<---------YAB1                --------->YAB1<---------TOE2(3)       <---------ATHB12  <----------DOF2                   <---------YAB1--------->AHL20(2) --------MYB52(1)   <---------ARR11(3)            <---------TOE2(3) ------->TEIL <---------YAB1 -------->GT1       --------->ARR11(3)          ---------->DOF2--------->YAB1  --------->YAB1   -----   cggtatcaaatcatttaaattagatatcttttatttttgtccacaaaaaacaaaggtatgtattataatgaatattaatatttataaatagaccgaaata  2562800                                                   <-----------GT1                                                <---------ICU4         --------->AHL20(2)                                               <---------AHL20(2)    ----------->GT1               <-                                               --------->AHL20(2)   --------->DAG2                 <-       --------->GLK1(2)                 ------>MYB46(1)           ---------->DOF2                 <-       <-----------ARR10                 ------>MYB83           --------->AHL20(2)             <----- >GT1  <---------ARR11(3)              <---------MYB46(2)   <---------AHL20(2)                 <----- ---->AHL20(2)                         <---------MYB59      --------->AHL20(2)           --------->ICU4   aaaaaccaaaatctaacttcatagatagttcatacttcataccaaacaaaaaattacaatatttaaataaaaagtaaattcgagtttcgaattgattatg  2562900                                                                                     --------->MYB52(1)                                                                        --------->MYB52(1) ----------                                                                      <---------SPL7 ------>MYB83  <-                                                                   <---------MYB52(1)------>MYB46(1)                                                                  --------->LBD16    -------->P    --                                                              --------->ARR14(2)    --------->MYB55(1)                                                              <---------ARR14(2)    --------->MYB52(1)                                                            ----------->HVH21      --------->MYB46(3)   ----------->ARR10                                       ------>ZmHOX2a(2)       <---------MYB55(2) -----MYB46(1)                                            <------ZmHOX2a(2)        <---------MYB111(2) -----MYB83                  <---------DAG2              --------->ARR14(2)   --------->SPL7      --- --------MYB46(3)  ----------->GT1                       <---------ARR14(2)  --------->ARR14(2)   --- ----YAB1         ----------->GT1             <---------AHL20(2)------>ZmHOX2a(2)  --------->AtMYB61 ------RAV1(1)    ------>ZmHOX2a(2)          --------->AHL20(2) <---------LBD16   --------->MYB46(3)   ttggtttgattcggattagatcggaaaatcaatttttggtagtagtatttaatagacccgatctgatccggtagtaccggttcgaccaaccggttcaata  2563000                                               ------------>CBF                                           <----------DOF2                       <----------DOF2                                     ------>MYB46(1)                             ====================                                     ------>MYB83                               <---------ANAC58                                     <---------ARR14(2)                  *TSS   <---------ANAC58                                     --------->ARR14(2)                 <---------AHL20(2) -->CBF                            --------->MYB46(3)                 <---------RVE1(1) --------AHL20(2)     <---------At4g35610===============================HOX2a_HOX2a  <---------At5g28300 ------->ATHB12<------------CBF    --------->AtMYB61                 <---------GLK1(2)     --------->YAB1 ------>AHL20(2) --------->YAB1   ------------>CBF                   --------->ARR11(3)   <-------TEIL ------>ICU4------------>CBF<<<<<<<<<TBF1------>ZmHOX2a(1)       <------ZmHOX2a(2)  <-----------GT1   tttattagattaaaaccaattgtcatcttcttcttcaccaatcctctttctcaattcaacttctccgatcagatttttttttgctttcaccgttcataac  2563100                                                  <---------HSFB2a(1)                                                  --------->HSFC1(2)                                                  <---------HSFC1(2)              --------->ANAC46                                                  --------->HSFB2a(1)         <-----------GT1                                                 ------->TEIL              <----------TaMYB80     ---                                                 <---------ARR11(1)       <---------ARR11(3)     ----                    <----------DOF2              --------->ARR14(2)       --------->ARR11(3)    <----    <-----------HVH21             <-------TEIL   <---------ARR14(2)       <---------GLK1(2)    <-----   ============================bZIP_DOF          --------->GLK1(2)        --------->ARR14(2)   ------   --------->TGA1a------>ZmHOX2a(1)   <---------TOE1(2)                   <---------ARR14(2)   <----- ============bZIP_DOF     <----------DOF2        <-----------ARR10<---------AHL20(2)          <------   ttctcaggtcagttttcttcctctttcactttcaaattcgtatggtttacgaatcttcttcgctattttttattcagatattcccctccatatgttagat  2563200                          <-----------GT1                      --------->ATHB51              --------->HSFC1(2)              --------->HSFB2a(1)             <---------ARR14(2)            <---------GLK1(2)         <---------HSFB2a(2)                                                              --------->LBD16         --------->HSFB2a(2)<---------ANAC58          ------>NtERF2                      <---------ANAC58 ------>HSFB2a(2)     --------->AHL20(2)              <---------DEAR3(2)                 <---------ANAC46 -->ZmHOX2a(2)<---------HSFB2a(1)                    <---------DEAR3(1)                  <---------ANAC55(2) --ZmHOX2a(2)------->TEIL <---------AHL20(2)         <---------RAP2.3(2)                 <---------ANAC58 ----ARR11(3)--------->ARR14(2)                   ----------->HVH21      <---------ANAC58<---------ANAC55(1) --->ARR11(3)<---------ARR11(1)       <---------TOE1(3)      --------->ZAT6             ------>ZmHOX2a(2) ----AGP1--------->HSFC1(1) <---------ANAC58     --------->DEAR3(2)      <---------ANAC58--------->ANAC55(2) ---CCA1(2) <---------CCA1(2)         <---------TOE2(3)<---------At4g35610     <----------DOF2   ctcgaatttttctcgaatctcccataatttacttgaatttagggtttttgaatcgacggctcatcactaagttttgcttaactttgttgatccgtgtttt  2563300                           ----------->HVH21                                                  <------                      <---------CCA1(2)                                                       <------                    <---------ICU4                                                            <------                    --------->YAB1                                                       --------->ATHB12                   <---------ATHB12               <---------ARR11(3)                     <---------ICU4                 --------->WOX13(1)               --------->ARR11(3)                    --------->ICU4              --------->ANAC58                 <-----------GT1                          <---------YAB1              --------->ANAC55(1)           --------->ANAC58                      --------->TOE1(2)              --------->ANAC55(2)           --------->ANAC58           <----------DOF2 <XXXXXXXXXXXXX              <---------ANAC55(2)     <---------ANAC46     <---------MYB46(3)   --------->GLK1(2)              --------->ANAC58   <---------ARR11(3)        <-----------RAV1(1) --------->GLK1(1)              --------->ANAC46   --------->ARR11(3)      <---------MYB52(1)    <---------GLK1(1)   tgttcatcgttttcatacgcaatcatctcttgacagaccttcgtgtaagtaacatctccatttgttgtctcatctttgaagaaatctgggattattgctt  2563400                       <---------ZAT6                                                        ========         <---------ARR11(3)                                                                  <-------         --------->ARR11(3)    --------->AHL20(2)                                            <------- ---ANAC58           ----------->GT1                                             --------->GLK1(2) ---ANAC58       --------->GLK1(2)                                              <---------GLK1(2) ---ANAC46--------->CCA1(2) <---------ICU4                          <---------At4g35610      <------- XXXXXXXMIR4227<------ZmHOX2a(1)                  <----------DOF2   --------->At4g35610      <-------   ctagtgagtgagatataggaatctagtgaaaaattacttagcttcttcatagcttttgttccatgttgtctgctaaatgtgagattctattactgacttg  2563500                                                  --------->ANAC58                                                  --------->ANAC46                                                  --------->ANAC58                                              <----------DOF2                                   <---------GLK1(1)             <---------At4g35610                          <---------MYB46(3) <---------ANAC58    <---------HSFC1(2) ==============================MYC_MYB  --------->ATHB12 --------->CCA1(2) --ANAC58               <---------MYB52(1)   <---------ANAC58    --------->HSFC1(2) --ANAC58              <-------GAMYB   <---------YAB1 --------->ANAC58                       <------MYB46(1) --TGA1a              <-----------RAV1(1) <---------WOX13(1)     --------->At4g35610         <------MYB83 --ANAC46   <-----------GT1        --------->GLK1(1)  --------->ANAC58                   --------->ATHB12   tgagattagagttttaacttggctctgttggatgaagaaatctgattgctttaagcaagttatgggaagcttagtgaagaaattagcttcttgataggtt  2563600  Previous    Next  AGI:  At4g05000.1    Description:  vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein. Identical to Vacuolar protein sorting-associated protein 28 homolog 1 [Arabidopsis Thaliana] (GB:Q9S9T7;GB:Q6DBF1); similar to vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein [Arabidopsis thaliana] (TAIR:AT4G21560.3); similar to vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein [Arabidopsis thaliana] (TAIR:AT4G21560.2); similar to vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein [Arabidopsis thaliana] (TAIR:AT4G21560.1); similar to unknown [Populus tri Range:  from: 2563073    to: 2564738    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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