Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <------ZmHOX2a(1)                                                                         <----------ID1            <-                                                                      ---------->DOF2        <-------                  <---------ZAT14                                  <---------WOX13(1)        --------                  --------->ZAT14                ------->TEIL    --------->ATHB12          --------->HSFB2a(2)              --------->ZAT6                <---------AtLEC2     <--------ATHB1            <---------HSFB2a(2)            <-----------GT1                <-------TEIL         --------->ICU4       <---------TOE2(3)  <---------YAB1--------->ANAC46      <---------YAB1            <---------YAB1    <----------DOF2  --   gattataagaaaatttacactgcatagacaaaacccaattctaaatgcatgaatttgagtaagagaatgattgaaaggacaaaactttaggtttcagaag  2516800                                                                  ------->GAMYB         --------->ANAC58                                                               ----------->RAV1(1)      --------->ANAC46           --------->ICU4                  ----------->RAV1(1)--------->MYB46(3)        <---------ANAC55(2) ---------ID1     --------->ZAT6     <---------ALFIN1       <-----------GT1             --------->ANAC55(1) --At4g35610     <---------YAB1     --------->ZAT18     ------>MYB46(1)         ---------->DOF2 ->At4g35610   <---------ICU4 <---------ANAC58          ------>MYB83<---------GLK1(2)   --------->ANAC55(2) --------->GT1--------->ICU4  <---------ANAC58        <---------MYB59--------->GLK1(2)  --------->ANAC58   aaggaaaaacttactgattatgactagattgagcttggcacactgcaacaagagaaccaaattaacaacagaatcgaatgaataaagaacacgcaagtga  2516900                                                        ----------->TGA1                                                     <---------DEAR3(1)                                                   --------->MYB52(1)                                                   ------>NtERF2                                                --------->At4g35610                                                <---------At4g35610                ----------->HVH21                                              <------NtERF2--------->ANAC58        <---------SPL7                                            --------->DEAR3(1)                  ---------------------                <-------GAMYB               ----------->HVH21             --------->MYB46(3)      ---               ----------->GT1             --------->DEAR3(2)             <---------MYB59         ---       <---------ARR14(2)         ---------->DOF2 ----------->HVH21      --------->ANAC58       <----       --------->ARR14(2)      --------->HSFB2a(2)--------->WRKY12    <---------SPL7         --------      --------->ATHB12         <---------HSFB2a(2)----------->TGA1  --------------->AtSPL8   --------     <---------YAB1           <---------LBD16------>NtERF2 --------->ANAC58   <---------ATHB12  -----   --------->YAB1        <---------YAB1<----------DOF2  ----------->HVH21--------->ANAC58  --------->MYB52(1)   aactatgaagattgggagcgttacattataaatctggaaagctttgccgacgctgacggtgacgaaagtctcggtacccaatcgctggacggagaacgga  2517000                                                                               <---------LBD16                                                                           <---------ARR14(2)             <-----------GT1           --------->KAN4(2)                   --------->ARR14(2)       <---------MYB52(1)             --------->HSFB2a(1)                 --------->GLK1(1) -->TaNAC69(2)                        <---------HSFB2a(1)                 <---------GLK1(1) ------------>AtSPL8                  <---------HSFC1(2)               <---------TOE1(3) ------------>AtSPL3       --------->MYB52(1)                          <---------TOE2(3) -----ARR14(2)            <---------REM1(2)                      --------->AHL20(2) ->ANAC58 --------->ANAC55(2)         --------->HSFC1(2)         <---------ARR11(3) ->ANAC58 <---------ANAC55(2)     ----------->GT1              --------->ANAC58------>ZmHOX2a(1) <--- ---->ARR14(2)         <---------------AGL15    <----------DOF2--------->ANAC58--------->LBD16 <-----   accgtactcgttatgtaacctattgctctaaacggttcgaaaattcccatctttcgagttcgaacaagaaattagggtttcctcggaaaaacgattttag  2517100                                                     <------ZmHOX2a(1)                                                  <------NtERF2                                                  <-----------RAV1(2)                                                  --------->ATERF1(1)                                                 ------>NtERF2                                                --------->DEAR3(1)                                                <---------ANAC46                                               <------NtERF2                                               --------->RRTF1(1)                                               --------->ATERF1(1)                                               ------>NtERF2                                               --------->RAP2.3(1)                                              <---------ATERF1(1)                                            <---------LBD16                                         ---------->DOF2                            <----------DOF2                                        <---------ARR14(2)              <---------At4g35610                             <---------ANAC58 <---------ORA47(2)     <-------TEIL--------->ARR11(3)         ---------->DOF2     <---------ANAC58 <---------DEAR4(2)    --------->CCA1(2)          <-----       <---------ATHB12    --------->ARR11(3)<---------DEAR3(1)    <---------ARR14(2)      *TSS<----- ---ZmHOX2a(1)             <---------ARR11(3)--------->ANAC46      --------->ARR14(2)      <--------- ----TOE2(3)    ----------->GT1         --------->ARR14(2)      <------ZmHOX2a(1)<---------ARR11(3)   gattatcaaatcaaagaaaggttttttaagagcttgagagagaaaacgcggcgcaggagcgatggaggagatacagcaaacaagacctttggggtttagg  2517200                                         <----------DOF2                                       --------->LBD16                        <------MYB46(1)                                   <-----------GT1                       <---------AHL20(2)                              <---------AHL20(2)                      <-----------------AGL2       <---------HSFB2a(1)    --------->AHL20(1)                      <-----------------AGL3       <---------HSFC1(2)     <---------AHL20(1)              <-----------GT1 <------MYB83       --------->HSFC1(2)     --------->AHL20(2)     <---------MYB52(1)<----------DOF2  <---------TOE1(3)      <---------AHL20(2)         <---------At4g35610--------------->AGL15  <---------TOE2(3)     --------->AHL20(2)          <------NtERF2     ----------------->AGL3       <- <-----------GT1        <---------AHL20(2)        --------->ZAT18    <-------TEIL                  <- ----TOE1(3)           --------->YAB1<---------LBD16--------->At4g35610<---------------AGL15 <------- ----TOE2(3)<----------DOF2  <---------AHL20(2)   <---------ZAT18   <---------ARR11(3)    ----------- -DOF2 --------->HSFB2a(1)   --------->AHL20(2) <-----------HVH21  <---------GLK1(2)     ----------->GT1   gtttaacgaaatttctttgtccgaattttaattttattttccggtttaagtgtccgctcggtttatacaggttctttatttggtttggagaatgttaaat  2517300    ----------->GT1    <------MYB46(1) <------MYB83    <------MYB83    <------MYB46(1)   --------->MYB59 --------->MYB59   --------->MYB46(2) -----MYB83   <---------TOE2(3) -----MYB46(1)<---------YAB1                ----------->GT1                 <-----------GT1 --AHL20(2)<---------ATHB51         --------->ATHB12                       <---------AHL20(2) >GT1      --------->ICU4      ---------->DOF2      --------->AtMYB61      --------->AHL20(2)   ttggtttggtaaaattatggttcggttttggctaaaagtcattgaaatgtaaaaccaaaaccattttagtttaatatttaactaattgtcaatatcagta  2517400             --------->YAB1             <---------ICU4              <---------------AtSPL8            --------->ICU4            --------->AHL20(2)                     <------MYB83            <---------YAB1            <---------AHL20(2)                     <------MYB46(1)       <-          <---------ICU4      --------->ARR11(3)                  --------->ATHB12                 --          --------->YAB1     <---------CCA1(2)           <---------MYB52(1) <---------AtMYB61    <---         --------->ICU4    --------->AHL20(2)           <-------GAMYB     <---------MYB52(1)     ----  --------->YAB1   <----------DOF2----------->GT1       --------->At5g28300 --------->MYB59     <----   tcaattttaaaattatgatgacttttggtttaaatcttgtttaaatgtacaaagtctcggttaatgctcgattgcagtttggtctaaactctaaacaaat  2517500                                                             ------>ZmHOX2a(2)                                                            <------ZmHOX2a(2)                                                           <---------ARR11(3)                                                           --------->ARR14(2)                                                           <---------AGP1                                                           --------->ARR11(3)                                                           <---------ARR14(2)                                                           <-----------ARR10                                                          <---------ARR14(1)                                                          <---------CCA1(2)                                                       <------NtERF2                                                      <-----------HVH21 --------GLK1(1)                                     --------->DEAR3(1) ------->GLK1(1)                                   --------->ZAT2                           <-------- ------ICU4                                        <---------ZAT2                         <------MYB46(1) ----->ATHB12                                     --------->ANAC46                        <------MYB83 -----ATHB12                             --------->ANAC46<---------DEAR3(2)           --------->ATHB12   gatttccattcggtttgattctaagaaatttgagtttaatcacacaaaatcccagccgtcggatcttaagaaactctgtaacatagaaagattggtgtta  2517600                      <----------DOF2                                                        --------            <------ZmHOX2a(2)                                                                <-------         <---------DEAR3(2)                                                              ---------->DOF2       <------NtERF2  --------------------->WRI1                                  --------->TOE2(3)     --------->DEAR3(1)               <----------DOF2                   --------->WRKY18(1)--------->ICU4 ------>ZmHOX2a(1)<----------DOF2   <---------DAG2           --------->ANAC58     --------->TOE1(3) ==================HOX2a_HOX2a  --------->MYB46(3)           --------->ANAC58     --------->YAB1 -ZAT6<-----------HVH21       <-----------GT1              ---------->DOF2   <---------ARR11(3)  <---   atcctagccgtcggatcaagctttctttgtttaaaccactctttgttttgttactcagtctaaaagcaaatgtggtcaagataaccataaataaagatta  2517700  Previous    Next  AGI:  At4g04940.1    Description:  transducin family protein / WD-40 repeat family protein. similar to WD-40 repeat family protein / katanin p80 subunit, putative [Arabidopsis thaliana] (TAIR:AT1G61210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15675.1); similar to hypothetical protein OsJ_021286 [Oryza sativa (japonica cultivar-group)] (GB:EAZ37803.1); similar to hypothetical protein OsI_023090 [Oryza sativa (indica cultivar-group)] (GB:EAZ01858.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680); contains InterPro Range:  from: 2511026    to: 2517191    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g04950.1    Description:  thioredoxin family protein. Identical to Monothiol glutaredoxin-S17 (GRXS17) [Arabidopsis Thaliana] (GB:Q9ZPH2); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G32580.1); similar to hypothetical protein OsI_033059 [Oryza sativa (indica cultivar-group)] (GB:EAY79100.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Glutaredoxin-related protein (InterPro:IPR004480); contains InterPro Range:  from: 2517664    to: 2519975    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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