Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->AHL20(2)               <---------AHL20(2)           --------->AHL20(2)                               <---------ARR14(2)           <---------AHL20(2)                               --------->ARR14(2)           --------->AHL20(1)                               <---------ARR11(3)          --------->AHL20(2)                                --------->ARR11(3)          <---------AHL20(2)                                --------->AGP1      --------->AHL20(2)                       --------->YAB1<------ZmHOX2a(2)      --------->AHL20(1)       ----------->GT1 --------->ATHB12      <---------AHL20(1)      --------->HSFB2a(2)           --------->ARR14(3)      <---------AHL20(2)      <---------HSFB2a(2)           <---------ARR14(3)     --------->AHL20(2)    --------->GLK1(2)  <---------ATHB12------>ZmHOX2a(2)   --------->TOE2(3)   --------->YAB1  <----------ID1  <------NtERF2      ---------->DOF2  --------->AHL20(2)   aaaaacattaaattaaattaaactaaaataatctagaaaaaaaaacaaatcataggcatcgagatcttgagaaccaaaaaacaccataaacaaaaaaata  2481900   ------>ZmHOX2a(2)                                             --------->ANAC58  --------->CCA1(2)              ------>ZmHOX2a(2)               --------->ANAC46  <------ZmHOX2a(2)             <------ZmHOX2a(2)                --------->ANAC58 <---------ARR11(3)            ------->TEIL        --------->TOE1(3) <-----------ARR10             --------->ARR14(2)  --------->TOE2(2)              <-------TEIL --------->ARR14(2)            <---------ARR14(2)  --------->TOE1(2)        <-------MYC2 <---------AGP1      --------->ANAC58              --------->TOE2(3)        ------->MYC3 --------->AGP1      --------->ANAC46        --------->YAB1   <-------TEIL  <-------MYC3 <---------ARR14(2)  --------->AtLEC2     --------->YAB1  <-------TEIL  <-------TEIL --------->ARR11(3)  --------->ANAC58<------ZmHOX2a(2)   --------->CCA1(2)  ------->MYC2    ---------   gaagatctaagagtctcaacaacatgcaatatggatccgatctataaacataacctaagatacatacacacaaatgcatatgcatacatatatgtgtaga  2482000               --------->YAB1              <---------YAB1        ------>ZmHOX2a(2)       <---------RVE1(1)       <------ZmHOX2a(2)      <---------ARR14(2)        <---------DAG2                      ------>ZmHOX2a(2)      <---------ARR11(3)   ------>ZmHOX2a(2)                       <---------YAB1      --------->ARR14(2)  <------ZmHOX2a(2)                       <---------ARR11(3)      --------->ARR14(3) --------->AGP1                           --------->ARR11(3)      --------->ARR11(3) --------->ARR11(3)         --------->TOE2(3)      <---------ARR14(3) <---------ARR11(3)  --------->At5g28300 --------->YAB1  ---------->DOF2<---------YAB1 <----------DOF2     --------->TOE1(3)<----------DOF2        <-------- >REM1(2)<----------DOF2<---------GLK1(1)   ----------->GT1     <---------ATHB12        <-----------GT1   gagagaaagatcttttttgataatagagatcttacttttggagacacagtgaaaccctaattcacaatgatctttggtttatgcccatttttgcctttga  2482100                                                  --------->LBD16                   --------->YAB1          <--------P                  <---------ATHB12        <-------GAMYB                  --------->ICU4          <---------ANAC58                <---------ARR14(2)                  <---------YAB1          <---------ANAC58       <---------ARR14(2)         ------>ZmHOX2a(2)               <------MYB46(1)         --------->ARR14(2)        <------ZmHOX2a(2)                <------MYB83     --------->DEAR3(1)        --------->CCA1(2)                --------->MYB55(2) --------->MYB52(1)       <---------ARR11(3)                <---------DEAR3(2) -------->P --------->LBD16       --------->ARR14(2)                --------->MYB52(2) ------>MYB83  --------->ARR14(2)       <---------ARR14(2)                <---------MYB46(3) ------>MYB46(1)       <---------AGP1                   <---------MYB46(3)----------->HVH21       --------->ARR11(3)               <---------AtMYB61--------->DEAR3(2)       <---------ARR14(3)               --------->MYB111(1)--------->MYB55(1)       --------->ARR14(3)        ---------->DOF2 --------->HSFB2a(2)  --------->LBD16     ----------->ARR10---------->DOF2  <--------P<---------HSFB2a(2)  --------->ANAC46           ---- --DOF2--------->GLK1(2)     ----------->GT1    <---------LBD16 <-----------HVH21              ------   agaacagaagatctgagacaatgataaagagaagtaaaagggttggttgctccggaaaaaccgaccggttacccgagaaccggtgttattttgggataat  2482200                 <---------ZAT2                 --------->STY1(2)                 --------->ZAT2     <---------LBD16     --------->LBD16 <------MYB46(1)          <---------MYB46(3)    <---------LBD16 --------->MYB59         <-------GAMYB>>>>>>>>>TBF1                           ----    --------->TOE1(2)<------MYB83          <---------MYB46(3)          <------ZmHOX2a(1)     <------- ----->TOE2(3)   <---------STY1(2)         --------->MYB52(2)  <------ZmHOX2a(1) <------ZmHOX2a(1) --->GLK1(2)--------->ARR11(3)<<<<<<<<<<<<<<<<<LFY    >>>>>>>>>TBF1   <----------ID1   ---------->DOF2   ctcaaaccggggaagagctagctaggtattaagaacaatggaagtttgttgttgaagaagaagaaggagaagaggacaagagaggaaggaaaagaacagg  2482300                                                                        ---------->DOF2                                                                --------->YAB1                                                               <---------YAB1                                                             --------->YAB1                                                            --------->ICU4                   ---------->DOF2                 <---------ZAT14  <---------ARR11(3)         --------->YAB1    --------->ATHB12        --------->ZAT18<---------YAB1    <---------TOE2(3) ----->ALFIN1    <---------AHL20(2)        *TSS    ------------>CBF --------->ARR11(3) ----RAV1(2)    --------->AHL20(2)    --------->ZAT18     ------->TEIL------>ZmHOX2a(2)   tggagttgcaataagaaatttaaaaggagttattgatgagcgcatagagagggtgcaatgcatttatgatgatctaaagctccattaatgctatagtgag  2482400                                                                                               <-----                                                                                               ------                                                                                               ------                            --------------->AGL15                                             <------                            <---------------AGL15                                             -------                            =========================================================================              <----------DOF2        <---------ZAT6                                           -------          <---------CCA1(2)--------->ZAT6                                                <----------DOF2        <---------ICU4   <-----------GT1   ---------->DOF2                    <-----------GT1 <------   agaaacttactcatttctttgtatatttatctctatagagtgatagaaagagtttcggtttatataagtcaaaaccaaaatcactgtttttcttttacct  2482500          --------->AHL20(2)         --------->AHL20(2)   ----------->GT1                                                  <---------MYB46(3)  ----------->GT1                                                 <---------MYB52(1) ----------AGL15                            --------->AHL20(2)   <-------GAMYB --->TOE2(3)                        --------->YAB1   --------->ANAC58 --------->AGL15                   --------->KAN4(1) --------->ANAC46 -----------AG                   --------->YAB1  <-----------GT1<---------ANAC58 ---------->AGL1             ---------->DOF2<---------AHL20(2)  <---------ANAC58 ==========MADS_MADS  <---------TOE2(3)    --------->AHL20(2)   <---------ANAC46 ---------->AG        <---------TOE1(3)--------->YAB1--------->ANAC58         <---------ANAC58 -----------AGL1 --------->TOE2(3)<---------KAN4(2)  --------->AtLEC2         <---------ANAC58   ctataggttaaataaaaaacgtttaagcttgtaaagaataatcaaaaaaatttacatgcaagtgtttcgttggctacttggcttccacatatactaatgt  2482600                                                                                            <--------                                                                                            ---------                                                            <------MYB83                    <--------                                                            <------MYB46(1)     <---------ANAC58                           --------->SPL7                   ----------->GT1     <---------ANAC58                           ------->TEIL                    --------->MYB46(2)   --------->ANAC55(2)                        <---------ANAC58                   --------->MYB59      <---------ANAC55(2)                        <---------ANAC58                 <---------MYB52(1)     <---------ANAC55(1)                       <---------------AtSPL3    --------->ANAC58               <---------ANAC46                       --------------->AtSPL3    --------->ANAC58             <-----------GT1             <-----------GT1               --------->MYB46(3)          --------->ARR11(3)   <-------- --------->YAB1        --------------->AtSPL8 --------->MYB46(3)       <---------ARR11(3)   <--------   gtataagaattcatattacaaccatttcgtacctcatctatgtcaacaacaacgcattagttaggttaacaaagatttagttacttgtcatattgcgtag  2482700                                                          --------->ALFIN1                                                        <---------ANAC58                                                        <---------ANAC46                                                        <---------ANAC58                                                  <---------ANAC58                                                  <---------ANAC46                         --------->ZAT18      <---------ANAC58 -ANAC46                 --------->ZAT14      <---------ANAC58 >ANAC55(2)              <---------ZAT14 <---------ARR11(3) -ANAC55(2)              <---------ZAT18 --------->ARR11(3) --------->ALFIN1             <---------ANAC55(2) -ANAC58                <---------ZAT6 ------->TEIL --------->ALFIN1             <---------AtLEC2 -ANAC58     <---------MYB59   --------->REM1(1)  <---------ANAC58             <---------YAB1   ttctcaaaatttagacctaagtgctagtgtactacaacatgtatatattcgtgcgtgtgcgtgtgtgtgtgtgtctaaattatgcatgaatacataaatg  2482800  Previous    Next  AGI:  At4g04890.1    Description:  PDF2 (PROTODERMAL FACTOR2); DNA binding / transcription factor. similar to ATML1 (MERISTEM LAYER 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G21750.1); similar to homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G05230.2); similar to ATML1 (MERISTEM LAYER 1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21750.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO69679.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62139.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24141.1); contains InterPro domain Homeodoma Range:  from: 2476487    to: 2482343    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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