Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <------MYB83                                          --------->MYB111(1)                                     <---------ARR11(3)                              --------->DEAR3(1)                              --------->DREB2C(2)                            <---------At5g28300 ----------->RAV1(1)    <---------LBD16                        --------->ARR14(2)<---------MYB46(3)       ------->GAMYB         <---------ANAC58  <---------ALFIN1<------MYB46(1)        <------------AtMYB77         <---------ANAC46 --------->MYB46(3)  --------->SPL7    --------->MYB52(1) --------ALFIN1       <---------ANAC58    --------->MYB46(2) --------->TOE1(3)         <---------At4g35610 -------GT1           <---------ANAC58<---------YAB1         --------->TOE2(3)     --------->ARR14(2) ----GT1 <---------ANAC58<------ZmHOX2a(2)--------->MYB59   --------->ZAT6  --------->GLK1(1)       <   accatcttcttccttggaatcgttgcgatccaccgtcaatatgtttggtaccacagactgtaaccctaactgtctcggaaacctagttctgcttctaatt  2463700                                                          <---------ZAT14                                                          --------->ZAT14                                                     <------NtERF2                                                    ----------->RAV1(1)                                                    ------>NtERF2                                                   --------->ANAC58                                                   --------->ANAC46                                                   --------->ANAC58                                                  --------->LBD16                                                  <---------LBD16                 --------->HSFC1(2)                                                 <---------ANAC58                 <---------HSFB2a(1)                                                 <---------ANAC58            <---------------------WRI1             <-------TEIL                       <---------LBD16     <---------ANAC46            --------->CCA1(2) <-----------GT1 --------->ARR14(2)   <------NtERF2  <---------HSFC1(2)         <---------TOE2(3)<----------DOF2     <---------ARR14(2)  <-----------HVH21           <------ZmHOX2a(1) ------ZmHOX2a(2)         <---------DAG2     <---------MYB52(1)  --------->ALFIN1 --------->HSFB2a(1)   cgatccaatctaagattcagagcttcgacttttttcaaaacagagccgtttccgcgccagtgcaaaggtgtcgcagactggagaagtttccaaggaggag  2463800                              ------->TEIL                           --------->ANAC58                           --------->MYB46(3)                           <---------MYB52(2)                                            <---------ANAC46                        <------ZmHOX2a(1)                                               <---------DEAR3(1)               --------------->AGL15                                                   <---------ZAT14               <---------------AGL15                                                   --------->ZAT14              <-------TEIL --------->ANAC58                                  ------->GAMYB     <-----              ----------------->AGL2               --------->MYB52(1)     --------->MYB52(1)---------              ----------------->AGL3   ---------->DOF2  --------->ALFIN1 --------->MYB46(3)--------->ALFIN1 --------->CCA1(2)    <---------------AtSPL8     --------->CCA1(2) --------->ALFIN1    <---------LBD16   aagataagaagagaggtccattaagaggaacgaaccatttcgaaagcggagataaacggtgtgagaaatgtgggaacaacggcgaaaactgcggtggagt  2463900                               <------NtERF2                               --------->At5g28300                             <---------ANAC46                          <---------RAP2.3(2)                          <---------RAP2.6(2)                   --------->At4g35610                   <---------At4g35610                <---------MYB52(1)                                                    ----------->GT1                <------NtERF2<---------DEAR3(1)                                      ------>ZmHOX2a(2)               --------->LBD16<---------MYB46(3)                                    <------ZmHOX2a(2)             <---------LBD16<---------ABI4(1)             <---------WOX13(1)       --------->ARR11(3)            --------->LBD16<---------RAP2.3(1)          --------->ATHB12           <---------ARR14(2)         <---------ATERF1(1)<------NtERF2               <---------MYB46(3)         <---------ARR11(3)        --------->ARR14(2)<---------RRTF1(3)          <---------MYB52(1)           --------->ARR14(2)   --------->MYB52(1)<---------REM1(1)   --------->ARR11(3) --------->ATHB12       --------->AGP1 ------HVH21------>NtERF2<---------At4g35610         --------->LBD16              <---------GLK1(1) - >ZAT14 <---------ARR14(2)<---------DEAR3(1)       <---------LBD16       <----------DOF2 ---------->DOF2   cagagaaacggttccgccggaagctgtagcggcggtgaagaatggtcttgttttccggtgattgatttcaactagctttcttagagatctgtaaatcgcc  2464000                                           --------->AHL20(2)                                           <---------AHL20(2)                                          --------->AHL20(2)                                          <---------AHL20(1)                            ------>ZmHOX2a(1)   <---------At5g28300                <---------At4g35610       <---------AHL20(2)                --------->At4g35610   <---------AHL20(2)                <---------ZAT2   <---------AHL20(2)                <---------HSFC1(2)   <---------AHL20(2)                <---------HSFB2a(1)  --------->AHL20(2)                                         -----                --------->ZAT2  --------->AHL20(2)                                            -------          ---------->DOF2  --------->TOE2(3)   <-----------GT1                             --------->MYB52(1)   --------->YAB1  <-------TEIL <---------AHL20(2)           <------ZmHOX2a(1)       <----------DOF2 -------->YAB1  --------->HSFC1(2)  --------->YAB1         --------->MYB59    <---------YAB1<--------   attgatcatcaacaaagcagcttcgtcttcctcattaattttaatttaattactgtttagttaggaatttgaattttgttttgattcctttaacaccgga  2464100                                                       <-------MYC3                                                       ------->MYC4                                                       <-------MYC4                                                       ------->MYC3                                                       ------->PIF5                            ------                                                       <-------PIF5                ==================                                                       <-------MYC2                <---------DAG2                                                       ------->MYC2                <----------DOF2                                                      --------->O2         <-------MYC3       -------                                                      --------->TGA1a      ------->MYC4       <------                                                      <---------O2         <-------MYC4       -------                                                      <---------TGA1a      ------->MYC3       -------                                                      ========================================bZIP_DOF                                                      <---------ANAC55(2)  ------->PIF5       <------                                                    <---------ALFIN1       <-------MYC2       <------                                             <---------ANAC58              ------->MYC2       -------                                             <---------ANAC46              <-------PIF5       <------                                           ------>NtERF2                  ====================bZIP_DOF                                         *TSS<---------ANAC58             <---------TGA1a    --------                                        <---------At4g35610               --------->TGA1a    --------   <------ZmHOX2a(1)                    --------->ZAT2<--------ABF1       <---------ANAC55(2)<------- ----->DOF2              ------>NtERF2  <---------ZAT2<---------ANAC46    <---------O2       <------- -->LBD16     ------->TEIL              --------->At4g35610               --------->O2       -------- -LBD16   <---------ARR11(3)         <---------At4g35610      --------->YAB1--------->ALFIN1 --------   aaggaggaagaagatgtatcagagaggcgactaggttttcgctgctggcttgtgccacgtgtaatcttcatgaaacacgtggatgctttatgtacacgtg  2464200   <------ZmHOX2a(2)  --------->ARR11(3)  <---------ARR11(3) --->ALFIN1 ==bZIP_DOF >MYC2 -PIF5                                  --------->LBD16 >MYC4                              <-----------GT1 >MYC3                         <---------ARR11(3) -MYC2                     <---------LBD16 -MYC3                   --------->ARR14(2)                               <---------GLK1(2) >PIF5                   --------->GLK1(2)                                --------->ARR14(2) -MYC4               ----------------->AG                                 <---------ARR14(2) ->TGA1a             ----------------->AGL1                           <-----------------AGL1 ->ANAC46            <-----------------AGL1      <---------GLK1(1)    <-----------------AG --TGA1a             --------->ANAC46  --------->ANAC46               ----------------->AGL1 --O2    <---------ANAC46<---------ARR14(2)  --------->YAB1       <-------TEIL----------->GT1 ->O2--------->KAN4(2)<---------MYB59 <---------LBD16            <-----------HVH21       <------ZmHOX2a(2) ->ANAC55(2)         ===================================================================MADS_MADS   gtgagatcattcggtatagctataccgaatcgggatattaaccggaataagaaatcggattagcaacgttcagcccgattcggaaaattggatcaaatgt  2464300                                        --------->LBD16                                       ----------->GT1                                      ------>ZmHOX2a(2)                           ----------->HVH21                                     <------ZmHOX2a(2)                         <-----------ARR10                               --------->ARR14(2)                              --------->GLK1(2) ----                               <---------ARR14(2)                              <---------ARR11(3)<---                            --------->ANAC46                                  --------->RVE1(1)  <---                        <---------GLK1(1)                              ----------->GT1           ----                    --------->YAB1  --------->ARR14(2)                ----------->GT1           -----               --------->AHL20(2)   <---------ARR14(2)               --------->DAG2        --------->MYB52(1)       <----------CDC5  --------->GLK1(1)                           ---------->DOF2    --------->LBD16   ttgtttagggctgagcataaaatcagaaatccgaaaccgatccgaaaaattcggtttcgaaatcgaaccaaaaagttaaaaaatctgaccggataacgaa  2464400                                                                                   --------->AHL20(2)                                                                 --------->LBD16   <---------AHL20(2)                                                         --------->LBD16       <---------AHL20(2)                                                     <---------ARR14(2)       <---------AHL20(1)                                       <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------AHL20(2)                                     ----------->GT1 --------->ARR14(2)--------->AHL20(2)                                   ------->TEIL     --------->GLK1(1) <---------AHL20(2)     --------->At4g35610     --------->ARR14(2)     <---------GLK1(1) --------->AHL20(1) ----->HSFC1(2)              <---------ARR14(2)     <----------TaMYB80<---------AHL20(1)--------->AHL20(1) ------HSFC1(2)             <---------CCA1(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)<---------AHL20(2) ------HSFB2a(1)       <---------ARR14(1) xxxxxxxxxxxxxxxx>smallRNA(s)--------->AHL20(2)<---------AHL20(1) ----->HSFB2a(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------MYB52(1)  --------->AHL20(1) -->TEIL    -------->ATHB1--------->YAB1---------->DOF2 --------->ANAC46   --------->AHL20(2)     <--   ttttcttatctgaattattcgaaccgaatcatatctgaaccgaaaatcgaactgatatccgctaatccgaaataaaattatatatttaaaaatattagtt  2464500                             --------->AHL20(2)                                               -------                           --------->YAB1                                                     -------                <-----------GT1     --------->ZAT6                                           <-------            <---------AHL20(2)<---------AHL20(2)                                           --------->YAB1        <---------YAB1   --------->AHL20(2)<---------ARR11(3)                              <---------ICU4      --------->YAB1     --------->AHL20(1)--------->ARR11(3)                             <---------YAB1   ----------->GT1      --------->YAB1    --------->CCA1(1) <---------GLK1(1)             --------->ICU4  <---------AHL20(2)  --------->AHL20(2)  --------->RVE1(1) --------->GLK1(1)           --------->YAB1 -------YAB1--------->AHL20(2)--------->AHL20(2)       <----------DOF2           <---------YAB1   atatttagttataatttataaccaaaaaataataaataacacaaatatctgaaataactttgatatccaattttgttttagttatatttgttataattat  2464600  Previous    Next  AGI:  At4g04870.1    Description:  CLS (CARDIOLIPIN SYNTHASE); cardiolipin synthase/ phosphatidyltransferase. similar to PGP1/PGPS1/PGS1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1), CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT2G39290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69667.1); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) Range:  from: 2461672    to: 2464141    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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