Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    <---------AHL20(2)                                                                <---------------AGL15                                                              --------->AHL20(2)                                   <--------HAHB4         <---------AHL20(2)                                   --------->ATHB12       --------->AHL20(2)                     ----                                   <---------ICU4     --------->AHL20(2)                        <----                                  <---------ATHB12   <---------YAB1                           -------                              <---------AHL20(2)  <---------AHL20(2)                 --------->AHL20(2)                              --------->AHL20(2)  --------->AHL20(1)                 --------->AHL20(1)                            <---------YAB1        --------->AHL20(2)                 <---------AHL20(2)  <-------TEIL             <---------AHL20(2)    --------->AHL20(2)                 <---------AHL20(2) --->At5g28300           <---------YAB1    --------->YAB1<---------AHL20(2)         --------->AHL20(2) ---->GT1   >>>>>>>>>>>>>>>>>LFY<-----------GT1  <---------AHL20(2)              --------->AHL20(2) >GAMYB     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------YAB1   <---------AHL20(2)--------->AHL20(2) <-   aaaatacattctcagtccattgtttctattattttaatcatttaagtataattttattatttatttatatttttagttacaaataaaaaaattgatcaat  2367200                                           --------->GLK1(2)                                           <---------ARR14(2)                                          <---------GLK1(1)                                          --------->GLK1(1)                                      --------->ANAC58                                      --------->ANAC58                                    ---------->DOF2  <---------DAG2                 ----------->GT1            <----------DOF2  <----------DOF2              <---------ZAT14           <------ZmHOX2a(1)   <-----------GT1 ----->YAB1                    --------->ZAT18           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -----ATHB51               <---------------AtSPL8 <----------DOF2       <----------DOF2    <--------- -->WOX13(1)   --------->DAG2  <-------TEIL--------->ARR14(2)   <----------DOF2 xxxxxxxxxxxxxxxxxxxxx ----------GT1---------->DOF2  --------->ZAT14  <---------MYB52(1)  <----------DOF2        <---------DAG2   tatactttatcacatataaagtgagtttttaagtacagtaaagcaaatccgtctttttaggactttctttctttctttcttacttctctcttactttttc  2367300                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                               <----------CDC5                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                              ----------->RAV1(2)                                              --------->At4g35610                                              <---------At4g35610                                            --------->MYB46(3)                                           ------>MYB46(1)                                           ------>MYB83                     <---------AHL20(2)                   <---------------AGL15   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   <----------DOF2        --------->MYB55(1)   ------>ZmHOX2a(2)                  <-----------------AGL2  xxxxxxxxxxxxxxxx>smallRNA(i)  <---------AHL20(2)                  <-----------------AGL1 --------->DEAR3(1)    --------->YAB1                  <-----------------AGL3xxxxxxxxxxxxxxxx>smallRNA(i)  --------->AHL20(2)            <---------AHL20(2)        xxxxxxxxxxxxxxxx>smallRNA(i)   <---------AHL20(1)        --------->YAB1              <---------AHL20(2)       <---------ARR11(3)  <-----------GT1---------->ID1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->AHL20(2) --------->AHL20(2)--------------->AGL15--------->DEAR3(2)   --------->ARR11(3)    --------->DAG2 -DOF2 <---------YAB1             <---------YAB1--------->ALFIN1     --------->AHL20(1) x>smallRNA(le3)<-----------GT1--------->ICU4<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)---------->DOF2   caattaactatcattttttttctttttaagggacttattaaaaccgaccgctggggctactctgatcttaatatatatataaaaaaaagttgctccatga  2367400                                            --------->YAB1                                            -------->HAHB4                                <---------MYB46(3)                                           <---------YAB1             --------->ZAT18     --------->MYB52(2)                                           <---------ATHB12           <---------ZAT14    <---------TOE1(2)      --------->YAB1                      <---------TOE2(3)         <---------ZAT18     <---------MYB52(1)      --------->ATHB12               --------->REM1(1)              --------->ZAT18   <---------ANAC58     --------->ICU4   <---------ARR11(3) --------->YAB1    <----------DOF2       <------------CBF <---------YAB1  <---------YAB1     <---------ZAT14<-----------RAV1(1)<---------ZAT18 <---------ANAC58   gttagcattgattacatttatcaatgtcttacatgggctacactaatgatagtatgttgggctttttatgtgtgctctagtagtattgtcgtttgtttgt  2367500                                           --------->ANAC58                                           --------->ANAC58                                         <---------ALFIN1                                      --------->ANAC46                                ------>ZmHOX2a(2)                               <------ZmHOX2a(2)                              --------->ARR14(2)                              <---------ARR14(2)                              <-----------ARR10                              <---------AGP1                             <---------CCA1(2)                             <---------ARR14(1)                     <---------TOE1(3)                 ======================HOX2a_HOX2a              *TSS<---------TOE2(3)                 =====================HOX2a_HOX2a           ---------->DOF2                 ------>ZmHOX2a(1)---------->DOF2        <---------YAB1    <-----------GT1--------->MYB52(1)       <---------YAB1     <---------At4g35610  ---------->DOF2--------->DAG2    --------->MYB46(3)   atttgtactatgactcatcctcttgttcatcggatctaaagcgccactcaaaagggtttatgaaaaggttagggttttaacaacaactcaaaaaacagag  2367600                       ----------->RAV1(1)                  --------->At4g35610                  --------->ZAT2                --------->DAG2               ---------->DOF2                                                           <---------ICU4      --------->HSFB2a(2)                                                               <---------ATHB12      --------->HSFC1(1)       <---------ANAC58                                        <-----------HVH21      <---------HSFC1(1)       <---------ANAC58                                    ------->TEIL     -      <---------HSFB2a(2)<---------ALFIN1           <---------ANAC46            <---------MYB52(2)  -  <---------GLK1(1)   ----------->HVH21             <---------WOX13(1)      --------->HSFB2a(2)     -  --------->GLK1(1)--------->TOE1(2)             ----------->HVH21          <---------HSFB2a(2)     <   atggatttcgagaagagaaaagctgcgacacttgcttcaattcgttcatcagtgactgataaatctcccaaaggttttctcgacgaacccatcatccctc  2367700              <---------ICU4                            ------->TEIL              --------->YAB1                    <-----------RAV1(2)             <---------ATHB12                  --------------------->WRI1           --------->WOX13(1)                <---------ZAT2      --------->MYB46(3)                --------->ARR14(2) --------->ANAC46             <---------ZAT14--------->ZAT2 -------->LBD16----------------------->TaNAC69(2)      <---------CCA1(2) -------->HSFB2a(2)           --------->ZAT14<---------At4g35610  ------>ZmHOX2a(1) ----->ZmHOX2a(1)         <-----------GT1   ------>ZmHOX2a(1)     <----------DOF2           --------- ---------HSFB2a(2) --------->MYB46(3)  <---------ARR14(2)--------->TOE2(3)------->GAMYB   <---------ATHB12   tcctcgaaaccatcaatcatcacccatcttacttcactaccagttcctgctcaggtcgaatctcaatcctttctcaacccaaaccaaaatcgaatgattc  2367800                                                     <---------ARR14(2)                    <-------GAMYB                    --------->ARR14(2)                   <---------MYB46(3)            <---------ZAT2                   <---------DEAR3(2)            --------->ZAT2<------MYB83                  <---------ANAC46               ----------->RAV1(2)                  <---------DEAR3(1)             <---------At4g35610                  <---------ANAC58               --------->At4g35610                  <---------ANAC58             <-----------RAV1(2)   <-----------GT1                  <---------RAP2.6(2)     ----------->HVH21    ----------->GT1                 <------NtERF2            --------->ANAC58     <------MYB46(1)              ------->PIF5                --------->ANAC58    --------->MYB59            --------->ANAC46       ---------->DOF2<-------TEIL        --------->ANAC46 <---------ARR14(2)<----------DOF2 >ATHB12      <-------PIF5              --------->ANAC46   --------->ARR14(2)<---------DAG2   aactaagaagaaagctcgtggcggttcatggctctatatcacacacgacccagctgattcggatttggtaatttctctccttttcccttccaagtcaaat  2367900                     ------>MYB83                 ------>MYB46(1)                 -------->P                 ------>MYB83               <---------MYB59               --------->AtMYB61                                                    --------->At4g35610            >>>>>>>>>>WRKY26                         --------->ATHB12               <---------At4g35610            <-----------GT1                          <---------ICU4               <---------DEAR3(1)<            >>>>>>>>>>WRKY43                        <---------YAB1               <-------TEIL       <            >>>>>>>>>>WRKY38                     --------->WRKY38(1)          <---------ANAC58      <           --------->WRKY38(1)                   --------->WRKY12             <---------ANAC58 <-----           --------->WRKY12                     <---------MYB52(1)       <---------ARR14(2)    ======      <---------MYB59------>MYB46(1)  <---------ARR14(2)                 --------->ARR14(2)  <-------   <---------WRKY18(1)                --------->ARR14(2)                <------ZmHOX2a(1)    <------- <---------WOX13(1)  --------->MYB52(1)       <---------MYB46(3)       --------->ICU4        <-------   cagattgacccaattgaccaacctagcgaattagtcttccgattcgagccgttgatcattgctgtcgaatgtaaggatttgggttcggctcagtttcttg  2368000   --------->WRKY38(1)  <---------MYB52(1)  --------->ATERF1(1) <-------GAMYB--------->At4g35610                                  <---------ICU4 ---------ANAC46                                                   --------->YAB1 ---------ANAC58                                                   -------->HAHB4 ---------ANAC58                                                  <---------YAB1 ------RAV1(1)<---------At4g35610                                 --------->ICU4 =========================RAV                                ----------->GT1 --ANAC58     <---------ZAT2                                ----------->GT1                        -- --ANAC58     ----------->RAV1(2)       --------->ARR11(3) --------->DAG2                          <- --ANAC46     --------->ZAT2--------->GLK1(2)            ---------->DOF2     --------->ANAC46    <---   tggcgttggctatatcagctgggtttagagagtctggtatcacatcttgtggtgatggcaaaagggtaattatagctatacgatgctccattcgaatgga  2368100  Previous    Next  AGI:  At4g04670.1    Description:  Met-10+ like family protein / kelch repeat-containing protein. Identical to tRNA wybutosine-synthesizing protein 2/3/4 [Arabidopsis Thaliana] (GB:Q8W4K1;GB:Q9S9V3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18610.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ53798.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17937.1); similar to hypothetical protein OsI_025283 [Oryza sativa (indica cultivar-group)] (GB:EAZ04051.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro doma Range:  from: 2367564    to: 2372214    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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