Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  ---------->DOF2                                                        --------->AHL20(2)                                                        <---------AHL20(2)       --------->AHL20(1)                                                  <---------ANAC58              --------->AHL20(2)                                                  <---------ANAC58              --------->YAB1                                   --------->AHL20(2) <---------YAB1           <---------AHL20(2)                                 <----------DOF2  <---------ANAC46    ----------->GT1 ------>At4g35610       --------->YAB1  <-----------GT1--------->AHL20(2)  <---------YAB1     <------   agcagacataaaacaaatatagacaacaatattgtctttatataacaatattgcttattaaaaaaaaaaagagagttataaataatattagtagaaaaaa  2218000                 <-----------HVH21                --------->ANAC58                --------->ANAC46                --------->ANAC58                ======================bZIP_DOF                --------->O2                <---------O2                --------->TGA1a                --------->bZIP60(2)             <---------ZAT18             <---------WRKY38(1)                                                                <----     <-----------ARR10                                 --------->ARR14(2)                       -----     --------->ARR11(3)                     ----------->RAV1(2)                                <-----     --------->ARR14(2)                  --------->HSFB2a(1)          ------->GAMYB          --------     <---------ARR14(2)    <----------DOF2 --------->GLK1(2)         --------->MYB46(3)<---------ARR11(3)     <---------ARR11(3)    <---------DAG2<---------HSFC1(2)   <---------CCA1(2)        --------->ARR11(3) ---AHL20(2) --------->ZAT18             --------->HSFC1(2)------>ZmHOX2a(1)      ---------->DOF2   ttgacaatatctgagtccacgtcaaaaccctttttgtagccgaagcatctggttctctatcctcgtctctaaccacatactagacaaagtatctctcata  2218100                                                                --------->WOX13(1)                                                               --------->MYB46(3)                                                              ------------>CBF                                                          --------->ANAC55(2)                                                          <---------ANAC55(2)                                                          --------->ANAC58                                                     <---------------AtSPL8                         <-----------GT1             <---------------AtSPL3                     <<<<<<<<<TBF1                 --------->CCA1(2)              ----------------------->TaNAC69(2)  --------->ARR11(3)             <---------RVE1(1)                    <---------ARR14(2)             <---------GLK1(1)                  ----------->ARR10 <---------ATHB12             --------->CCA1(1)               ----------------------->TaNAC69(2)             --------->RVE1(1)              --------->ATHB12  <---------KAN4(2)             <---------CCA1(1)             <---------YAB1 --------->ANAC58             --------->GLK1(1)     ----------->TBP--------->ARR11(1)                                <            <---------ARR11(3)   <---------------AGL15    --------->ANAC46   --------->ANAC46     <-- -----ARR11(3)<---------ARR11(3) --------------->AGL15   <---------LBD16   --------->ANAC58     ----- ---->ARR11(3)--------->ARR11(3)===================================================================== ----CCA1(2)--------->ARR11(3)  <-----------------AGL3   --------->SPL7    --------->ANAC58  -------- ->YAB1   <---------TOE2(3)     ----------------->AGL3 <---------SPL7      --------->ANAC46 <--------   tctctctcttctaagatatcttcttcttcacctctctatatatggatgattagatatggtacggaacaatcactcacacacaaaacacactctagatata  2218200                     <----------DOF2                     --------------->AGL15                     ------>ZmHOX2a(1)         ----------->GT1                                                                  --------->ANAC58         --------->ANAC58                                                                 --------->ANAC55(2)         <---------ANAC55(2)                                                              --------->ANAC58         --------->ANAC58                                                                 <---------ANAC55(2)         --------->ANAC46                                                                --------->SPL7         --------->ANAC55(2)                                                             ------->TEIL         --------->ANAC55(1)                                                           <---------SPL7        <-------TEIL<-----------------AGL3                                            <---------ANAC58       --------->CCA1(2)                                                              <---------ANAC58      <---------ARR14(2)                                                       <---------ICU4      --------->ARR11(1)                                                       --------->YAB1      --------->ARR14(2)    <---------MYB46(3)                                <---------ATHB12    ----------->ARR10<---------------AGL15            --------->GLK1(1) --------->ANAC58 ------------ ------ZmHOX2a(1)<---------ARR14(2)             >>>>>>>>>SARD1          --------->ANAC58<---------SPL1(1) -------TOE2(3)  --------->ARR14(2)       <---------ANAC46              --------->AtLEC2--------->SPL1(1) ----->DOF2     --------->GLK1(1)         <---------HSFB2a(2)         ---------->DOF2--------------->AtSPL3 =====================================MADS_MADS >>>>>>>>>CBP60g  <-----------GT1   ------------------ ->CCA1(2)      <---------GLK1(1)        <---------LBD16       <---------AHL20(2)<---------YAB1     - -ARR11(3)      <---------CCA1(2)   <---------TOE2(3) <---------GLK1(1)--------->WOX13(1)<-------TEIL   aaggattagatacgtaacatatcctttttttggttactagggtttcggaaatttggatatcaaattttaacatcaagcaaatcatcatccgtacgtactc  2218300                                                 ------>ZmHOX2a(2)                                                <------ZmHOX2a(2)                                               <---------ARR14(3)                                               --------->ARR14(2)                                               <---------ARR11(3)                                               --------->ARR11(3)                                               --------->ARR14(3)                                               --------->AGP1                                               <---------AGP1                            <--------P                                               <---------ARR14(2)                        ============                                        --------->WOX13(1)                              <---------MYB52(1)                                     <---------ARR11(3)                                --------->LBD16                                     --------->ARR11(3)         <-----------TBP       --------->HSFB2a(2)                                    --------->CCA1(1)    <---------ARR11(3)           <---------HSFB2a(2)                                    <---------CCA1(1)   <---------GLK1(1)            <---------LBD16                                    --------->RVE1(1)   --------->GLK1(1)      ----------------->AGL1                                    <---------GLK1(1)   --------->CCA1(1)      <---------ANAC58                                    --------->GLK1(1)   <---------RVE1(1)      <---------ANAC58                                    <---------RVE1(1)   <---------CCA1(1)      <---------ANAC46     <----------DOF2               --------->ARR11(3)   --------->RVE1(1)  --------->HSFC1(2) --->AtSPL3                        <---------ARR11(3)  <---------ARR11(3)--------->ARR11(3) >SPL14                          <---------TOE2(3)     --------->ARR11(3)<---------ARR11(3) -------->YAB1           ------------>CBF  --------->YAB1--------->ARR11(3)<---------HSFC1(2)   attcatacttttgtaacaaaaaaaaaaaacaatctaagatatctatcaagatcttaagatatctacatttatagagatgtttcgttttccggtaagtctt  2218400                --------->GLK1(2)                --------->ARR14(2)                <---------ARR14(2)               <---------GLK1(2)          <-------PIF5          <-------MYC3          ------->MYC2          <-------MYC2          ------->PIF5          ------->MYC3                               <---------MYB46(3)         --------->bZIP60(2)                        <---------AtMYB61         --------->O2                               <---------DEAR3(1)         --------->ANAC46                           --------->ALFIN1         <---------TGA1a                      ------->MYC2         --------->TGA1a                      <-------MYC2                       --------->At4g35610         <---------O2              --------->At4g35610                           <---------At4g35610       <---------ALFIN1       --------->At4g35610 <---------ANAC46               <---------LBD16      <---------WRKY12        <---------At4g35610<---------DEAR3(1)          <-----------HVH21      <---------WRKY38(1)   <-----------RAV1(2)--------->ALFIN1      ================================      <-------TEIL    --------->ANAC58        <-------MYC3           <----------DOF2         -------- <------ZmHOX2a(1)    --------->ANAC58--------->At4g35610            <---------DAG2--------->LBD16 ==================MYC_MYB<-----------HVH21   ------->MYC3   <---------TOE2(3)<------ZmHOX2a(2)------   ggaggaggtccacgtgagaatctgaagccatcagatgagcagcatcaacgtgcggtggtgaatgaggttgactttttccgatcagcggagaagagagata  2218500                                                                               <---------YAB1                                                                              <---------ARR11(3)                                                                              --------->ARR11(3)                                                                             --------->YAB1                                                                     ------->MYC3                                                                     ------->MYC2                                                                     <-------MYC3                                                                    --------->ANAC55(2)      <-------MYC3                                                  --------->TGA1a      ------->MYC3                                                  <---------ANAC46     <---------O2                                                   <---------ANAC55(2)     --------->TGA1a                                                <---------TGA1a     --------->O2                                                   --------->O2<---------ICU4     <---------ANAC55(2)                                            <---------O2--------->YAB1     --------->ANAC46                                             <-----------GT1     <---------TGA1a                                           <---------ARR14(2)     <---------ANAC46                                          --------->ARR14(2)        ------>ZmHOX2a(2)     --------->ANAC55(2)                                --------->DAG2--------->ALFIN1   --------->HSFB2a(1) ==============bZIP_DOF                               ---------->DOF2<-------MYC2    <---------YAB1 ->CCA1(2)                  --------->DEAR3(1)        ========================bZIP_DOF  <------ZmHOX2a(2) --->CCA1(2)        --------->TOE2(3)         <-------TEIL----------->GT1   <---------YAB1-----------   gggtttcacgtgaagaacaaaacattatcgccgatgagactcatagggttcatgtcaaaagggagaattcacgtgttgatgatcatgacgatcgttctac  2218600                                                                                                 xxxx                     <-------GAMYB                      <---------AHL20(2)                       ----                    <---------MYB46(3)          ---------->ID1  --------->HSFB2a(2)             <----                    ----------->GT1         <----------DOF2     <---------HSFB2a(2)             -----              <---------At4g35610    <------------------------ANAC81      --------->ANAC58      <----              --------->At4g35610 <----------DOF2       <---------YAB1    --------->ANAC58<---------GLK1(1) ------------>TaNAC69(2)        <------------------------ANAC81 <---------HSFC1(1)    <-----------GT1   tgatcacatcaatgtaagcagatggttaactcatcgcttttgttttctttgttttttttttattatctagaagttcaagctaaaaattctacatttccga  2218700                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <-------TEIL                                                       <-------MYC3                                                       ------->MYC2                                                       <-------MYC2                                                       ------->MYC3                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ---------                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxx          <xxxxxxxxxxxxxxxxsmallRNA(s)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxx          <xxxxxxxxxxxxxxxxsmallRNA(i)       --------->HSFB2a(1)                          xxxxxxxxxxx        ----------->RAV1(1)                  <---------HSFB2a(1)                          <<<<<<<<<<< --------->ANAC46           <---------AHL20(2)--------->KAN4(2)                           <---------At5g28300 xxxxxxxxxxxxxxx>smallRNA(se3)               ------>ZmHOX2a(2)                           <-----------GT1 ----->CCA1(2)         <-------TEIL         <------ZmHOX2a(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -----MYB52(1)     --------->AHL20(2)      <---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---->ARR14(2)     <---------AHL20(2)      --------->ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  - -----ARR14(2)    --------->AHL20(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxxx   tatgcgaaacccacattagattaaattcattttttttggagaagagatcgttcccaacgtgcatcaaacccagtacatccacatgagaaatttaccactg  2218800             <-------GAMYB            --------->MYB55(2)            --------->MYB52(2)            <---------MYB46(3)            <------MYB83            <------MYB46(1)           <---------TOE2(2)           <---------TOE1(2)   --------->MYB46(3)                                                                   <--------ATHB1  ------>MYB83                                                                          <---------ICU4  ------>MYB46(1)                                                                       --------->ATHB51 --------->MYB52(1)                                                                     --------->YAB1 ----------->RAV1(1)                                <---------AHL20(2)                  --------->AHL20(2) >ZAT6   <-------GAMYB                          <---------AHL20(2)                     <---------ATHB12 xxxxxxx>smallRNA(s)                       <---------YAB1                    --------->YAB1 xxxxxxxxxxxxxsmallRNA(le3)               <---------ARR11(3)<---------ARR14(2)         <---------ATHB51 xxxxx>smallRNA(s)                        --------->ARR11(3)--------->ARR14(2) <---------YAB1 <<<<<<LFY<---------MYB52(1)        --------->TOE2(3)   <---------LBD16     <---------YAB1     <----- -------->AtMYB61              <----------DOF2  --------->AHL20(2)         --------->AHL20(2)-------- xxxxxx>smallRNA(si3)          <---------DAG2  --------->AHL20(2)    ----------->GT1   --------->ICU4   gaccaacagctcgttggttacttcattgttttccttttcgtcaatatcatttaattacttcggattttagttagtaatattataaaacaataatttcgtt  2218900  Previous    Next  AGI:  At4g04450.1    Description:  WRKY42 (WRKY DNA-binding protein 42); transcription factor. Identical to Probable WRKY transcription factor 42 (WRKY42) [Arabidopsis Thaliana] (GB:Q9XEC3); similar to WRKY31 (WRKY DNA-binding protein 31), transcription factor [Arabidopsis thaliana] (TAIR:AT4G22070.1); similar to putative WRKY1a transcription factor [Coffea arabica] (GB:ABC86709.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) Range:  from: 2218377    to: 2221112    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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