Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <---------MYB46(3)                  <--------P                 <-------GAMYB                <------MYB46(1)                <---------MYB46(3)                <------MYB83               --------->MYB59               <---------AtMYB61           <------MYB83           <------MYB46(1)           <---------MYB46(3)          <---------AtMYB61         <--------P ----------->GT1        <-------GAMYB                                      <----------DOF2       <------MYB46(1)        --------->ANAC58           <---------YAB1       <------MYB83<---------AtMYB61                    <---------ARR11(3)       <---------MYB46(3)     --------->ANAC58        <---------MYB52(1)      --------->MYB59<<<<<<<<<<MYB80                 <-------GAMYB      <---------AtMYB61    <---------ATHB12        <---------DEAR3(1)    <---------ANAC46<------MYB46(1)            <-----------RAV1(2)                     ---------->DOF2  <---------MYB46(3)<------MYB83  --------->MYB52(1)<---------MYB46(3)   <---------MYB46(3)    <-----   ttagtggtttggttggtttggttggtttaatcaagctaatggaattggaccaggcggttatctttgattttgggattgttgaataaaccgaaagatgatg  2206000                          <---------ANAC46                    ------>MYB46(1)                       --------->ALFIN1                     ------->GAMYB                     <---------ANAC46              ----------->GT1                   --------->ZAT14                --------->DAG2                   <---------ZAT14                <---------TOE1(3)                           -------                   --------->ZAT18                <---------TOE2(3)                          <-------TEIL               --------->MYB52(1)               --------->CCA1(2)                    --------->YAB1        --------->ANAC58<---------ZAT14      <---------TOE2(3)------>MYB83           <---------ICU4        --------->ANAC58--------->ZAT14<---------YAB1      --------->MYB46(3)       --------->ICU4 ----YAB1    <---------MYB52(2)        <---------AHL20(2)<-----------GT1       --------->ANAC46   <--   actcagagagaagccactaactgcagtggagggttttcagttttattgagataaggttttaaccaactcaagtttgtttcaacgtaattatcacattcat  2206100                                      --------->LBD16                                      ------>NtERF2                                             <----                                      >>>>>>>>>>>>>>>>>LFY                                      -----                                     --------->ANAC46                                    <---------ARR14(2)                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                         --------->ARR14(2)                 ------->TEIL     --------->GLK1(2)<---------At4g35610              ----------->GT1       <---------MYB52(1)         <---------ARR14(2)                              ------>ZmHOX2a(2) -->YAB1  <---------YAB1          --------->ARR14(2)            --------->YAB1  --------->ARR11(3) <- --------DOF2   <---------CCA1(2)<---------GLK1(2) --------->At4g35610      <----------DOF2   <------   ctttcttctgttattcttgtatctagagagagagagattccgccattgttgtaagctcaaatttgagcataactcttcctttgatctagtgaatttgccg  2206200                   <------MYB83              --------->SPL7            <---------SPL7            --------->LBD16           --------->HSFB2a(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------LBD16          <------NtERF2        <---------ARR14(2)        --------->ARR14(2)             <---------At4g35610       <---------At4g35610        <---------ARR14(2) --------->ATHB12  <------MYB46(1)--------->ARR14(2)                               <---------ANAC58 -----RAP2.6(3)   <---------TOE2(2)    --------->At4g35610                         <---------ANAC58 ---->LBD16<---------HSFB2a(2)    --------->AGP1                               <----------DOF2  <---- --------WOX13(1) <---------TOE1(2)<------ZmHOX2a(2)                      <<<<<<<<<TBF1        <----- ---LBD16------>NtERF2    <------ZmHOX2a(2) ------->TEIL             <------------------------ANAC81   gattgattcggctccggacgtaggttagatcacaccgatctagctgaaccgagttaacaaatcgagtcttgtgttcttcttctttacttgttcgatagtg  2206300                                                                          <XXXXXXXXXXXXXXXXXXXXMIR845A                                                                       --------->YAB1                                                                 ------->TEIL                                                                 <---------ARR11(1)                                                                 --------->GLK1(2)    --------->ZAT2                                              <---------ARR14(1)    <---------At4g35610                 <---------ANAC58    <-----------ARR10    --------->At4g35610                 <---------ANAC58    --------->ARR14(2)    <---------ZAT2                  ---------->DOF2         <---------ARR14(2) -----ZAT18                 <------------CBF               <------ZmHOX2a(1) ----ZAT6    <---------ANAC46 ----------->GT1  ----------->GT1------>ZmHOX2a(2)                 <----   ttcttgagctgagttttgtgagagttgagagattgttacaaagcttgtgaggtttaatcgaggatcgaatctataacaagtggtatcagagccaaggcta  2206400                --------->bZIP60(1)                <----------ID1                <---------bZIP60(1)                <---------ETT(2)             ----------->TGA1           <---------At4g35610       *TSS--------->At4g35610      ------>ZmHOX2a(2)     <------ZmHOX2a(2)    --------->ARR14(3)    --------->ARR11(3)                                                        --------->ARR11(1)    <---------ARR14(3)                                                        --------->ARR14(2)    --------->ARR14(2)                                                       <---------HSFC1(2)    <---------ARR14(2)                                                       --------->HSFC1(2)    --------->AGP1                                                           --------->HSFB2a(1)    <---------AGP1                                                           <---------HSFB2a(1)    <---------ARR11(3)                                                      ----------->ARR10  <-----    <-----------ARR10                                            <-----------GT1<-------TEIL   ------   <---------CCA1(2)   ------->GAMYB                         --------->ARR11(3)--------->ARR14(1)  ----------->ARR10   --------->ANAC46      --------->TOE2(3)<---------GLK1(2)<---------ARR14(2)   <- --------CBF ----------->HVH21             ----------->GT1   <---------ARR11(3)--------->CCA1(2)   <-   ttggcagatcttccgatgacgacaacgacacgagtagagattaaaacgtttaatggcgatagagatttttctctatggaagattcgaatcgaagcacagc  2206500                               <-------TEIL                              <------ZmHOX2a(2)       <---------TOE2(3)     <---------ARR14(2)                                                 -----  --------->ATHB12 <---------ZAT14                            --------->ICU4                 <------- ----ZAT2 <--------P         --------->ARR14(2)  --------->KAN4(2)                        --------->ICU4 --->ZAT2<-------GAMYB ----------->HVH21        --------->KAN4(1)                         <---------YAB1 -----MYB83<---------MYB46(3)--------->AGP1   <---------GLK1(2)--------->ATHB12    <---------GLK1(2) -----MYB46(1)<---------YAB1--------->At4g35610 <---------KAN4(1)          <XXXXXXXXXXXXXXXXXXXXMIR837-5P   ttggttattggggttgatgaatacactgacagatccatctctaacaaagattgttccaatcgcaaagattgaaggaaataaaccagaaactgatgatgaa  2206600                             --------->YAB1                            <---------ATHB12                          --------->WOX13(1)                       <------ZmHOX2a(2)                      <---------ARR14(2)                      --------->ARR14(2)                      <-----------ARR10                    --------->LBD16                   --------->ANAC55(2)                   <---------ANAC46                   <---------ANAC55(2)                   --------->HSFB2a(2)                   <---------HSFB2a(2)             <---------ZAT2                  <---------LBD16                 --------->ANAC58                --------->ARR14(2)             --------->ZAT2                <---------ARR14(2)             --------->At4g35610               <---------HSFB2a(1)       <-----------ARR10       --------->YAB1               <---------HSFC1(2)        --------->ARR11(3)     <---------YAB1     <-----------RAV1(1) -->TEIL       --------->HSFC1(2)  ----------->GT1--------->ANAC58        <---------CCA1(2)     ----- --YAB1  ---------->DOF2------>ZmHOX2a(2)<---------ARR11(3)   --------->YAB1      <---------TOE2(3)   tcttctcagactaaagaagttccggatccaatcaaaatggaaaaatctcagcaagctaagaacatcatcataaaccatatcactgatgttgttcttctta  2206700                             --------->ALFIN1                        ----------->ARR10                    --------->At4g35610                    <---------ZAT2                    <---------At4g35610                    --------->ZAT2                 <---------At4g35610                        --------->GLK1(2) <---------ANAC58                 --------->At4g35610         --------->ANAC58                 <---------ANAC46                 <---------ZAT2  <---------DEAR3(1) <---------AtLEC2          <---------ANAC58                 --------->ZAT2 --------->SPL7  <----------DOF2             <---------YAB1         -- ----->DOF2    <-----------RAV1(2)           --------->ANAC58       <----------DOF2             -----   aagtccagcattgtgtttcagctgctgagatgtggacgacgcttaacaagctttacatggagactctattcttttaagatgcttgaaactttgagcattg  2206800      --------->ALFIN1                                                                         ------     <-------MYC3                                                                            --------     ------->MYC2            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 --------->ANAC58     ------->MYC3            <---------At4g35610                      <---------HSFB2a(2)    <-------     <-------MYC2            --------->At4g35610           --------->ATHB12        --------->ANAC46 ------->YAB1         <------ZmHOX2a(1)   <---------HSFC1(2)          --------->HSFB2a(2)--------->YAB1 ---->YAB1          <---------TOE2(3)     --------->HSFC1(2)<---------ANAC46       --------->ANAC58   atcagaacgtggatgaattcttgaggattgtagctgaacttggaagtttgcagattgtagttgattgtagttgcagaagaagtctaagcaatcttgatct  2206900  Previous    Next  AGI:  At4g04426.1    Description:  transposable element gene. copia-like retrotransposon family, has a 4.7e-149 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 2206407    to: 2208496    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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