Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                     <---------HSFB2a(2)                           <-         <---------ZAT6                              --------->HSFB2a(2)                          <-- ------>ATHB12                                       <---------HSFC1(1)  <---------MYB52(1)    <----- ---ZmHOX2a(2)                                       --------->HSFC1(1) <---------RAP2.6(3)<------ZmHOX2a(1) ---->ARR11(3)                              <-----------GT1           <-----------------------TaNAC69(2)   tcatgggcttagagttaacaagaagaagagaagttgatgagcccattaaccccttctagaagtgcgattagagccgttagaagggagaagagaggagagt  2189100          <---------TOE1(3)          <---------TOE2(3)     <------MYB83                         --------->ZAT6     <------MYB46(1)             --------->ANAC58   <--------P                    --------->O2  <---------MYB52(1)             --------->ANAC58 --------ANAC46                <---------WRKY38(1) --------ANAC55(2)            --------->WRKY18(1)                                                  <- -------LBD16                <-----------HVH21        --------->DAG2                              --- ------HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    ---------->DOF2             <----------DOF2  <--   cacgggtaggctaaggtttcatcttagccatggtcaagtcactatcactctagagaaaagtcgtctactctctcttcatgtctctttcattttgttttgt  2189200                                                                                       ------>ZmHOX2a(1)                                                           ------>MYB83    --------->ARR14(2)    ---------->DOF2                                        ------>MYB46(1) <-----------ARR10 ------GAMYB                                              --------->WOX13(1)          <-------------- ------>MYB52(2)                ---------->DOF2         --------->MYB46(3) <---------ARR11(3) -------MYB46(3)              <---------AHL20(2)      <-----------GT1      --------->ARR11(3)   ttgttgtaaagggaaccctagtgtctccctatataaaagtcttgttccctacattgtaaccaatctaatctaagtaatatcttcacttcctattcttggc  2189300                                                      --------->ARR14(2)                                                      <---------ARR14(2)                                                      --------->KAN4(2)                                                     <----------TaMYB80                                                    ---------->TaMYB80                                                  --------->LBD16                       --------->TOE2(3)       ------>ZmHOX2a(1)                        <---------LBD16                      <---------GLK1(2) ---AGL3     <-----------GT1                <----------DOF2  xxxxxxxxxxxxxxxx>smallRNA(i)   tcttctctcctctataaacttcatacttctccatacttctcatactcttttccgcatattctaacatggtatcagagcatgttcttcgattcttaacatg  2189400                                                                                                    <                                                                                                    -                                                                                                    -                                                                                             --------                                                                   --------->ANAC58      --------->At5g28300                                                                   --------->ANAC58     ----------->GT1                                                                   --------->ANAC46  ------>MYB83 ---                                                             ------>ZmHOX2a(1)       --------->MYB52(1)                                                            --------------->AGL15    ------>MYB46(1)<                                                            <---------------AGL15   --------->MYB55(1)                                                           ----------------->AGL1  <---------MYB55(2)                           <-----------GT1              <----------DOF2            --------->MYB46(3)               --------->ZAT6                        <---------ALFIN1             --------->ANAC46<--   ctaaatctcttctacttactctaatctacttactctctacattcttcttaaatctacactttcctcttcaagaaacactctattacccaacggttaaaag  2189500                                       <-------GAMYB                                      <---------DEAR3(2)                                      <---------MYB46(3)                                     <---------DREB2C(2)                                     <---------At1g77200                                     <---------DEAR3(1)                                   <-----------HVH21     --------->ANAC46           <---------DOF5.7(2)  <---------ZAT14             --------->DOF5.7(2) ---------ZAT14           --------->LBD16                                       ----------->RAV1(1) -------->ZAT18          --------->TOE2(2)                                     <----------ID1 -------->ZAT14          --------->TOE1(2)                                     --------->ANAC58 -->DOF2     *TSS       --------->DEAR3(2)                                     --------->ANAC58 ------------>AtSPL8  --------->ARR14(2)        ---------->DOF2               --------->SPL7    <---- ---------ZAT18       <---------ARR14(2)<---------AtMYB61                    <------ZmHOX2a(1)  <---- -------------AtSPL8 ---------->DOF2 <---------DEAR4(1)              <---------TOE2(3)--------->MYB52(1)   agtgtacacatcatggagaacccaaaaccggcgataacgtcggtggtcttgaaaggagagaactatctactatggatgaggacgacaaaaacggtgttat  2189600                                                                  <------NtERF2                                                                 ------>NtERF2                                                                --------->DEAR3(1)                                                                <---------DEAR3(1)                                                               <------NtERF2                                                               --------->RAP2.3(1)                                                               --------->ATERF1(1)             <-----                                                              <---------DEAR4(2)               ------         <----------DOF2       <---------ATHB12              <---------DEAR3(1)                ------   <------NtERF2              ------>MYB46(1)        ---------->DOF2       <-------TEIL       ------- -----bZIP60(2)               ------>MYB83   <---------TOE2(3)<---------RAP2.3(1)         >>>>>>>>>TBF1 -------RAV1(1)    --------->ICU4            <---------TOE1(3)<---------ATERF1(1)      >>>>>>>>>TBF1   gtggccgagggctttggagccatgttgaaaccaaacatgttcagtttaaggctaccaaagaagacggcgacgaagggttcaagagggaagaagaagaagc  2189700       ---------->DOF2    --------->HSFB2a(2)    <---------HSFB2a(2)  <------ZmHOX2a(2) ----------->GT1                                                   <---------ANAC58 ----At4g35610   <---------O2                                                         <---------ANAC58 --->At4g35610   --------->O2                                          <---------At4g35610 --->ZAT2   --------->ANAC58                                           --------->At4g35610   <------- -->GLK1(2) --------->ANAC58      --------->AtMYB61                    --------->GLK1(1)   ----------   tgagatcgagaaagaagccaagtggtttcaagaagaccaaaacgttctcgctattcttcaacattctcttgagagctccattcttgaggcttactcttat  2189800                --------->CCA1(2)         --------->ANAC46         --------->ANAC58         --------->TGA1a            <-------MYC2         <---------TGA1a            <-------MYC3    --------->ANAC46                ------->MYC3                                                -----    --------->ANAC58                ------->MYC2                                                -----    --------->ANAC58               <---------ANAC46                                          ------->GAMYB --YAB1  --------->ANAC58     <---------HSFB2a(2)                                           --------- ----->AGL15  <---------ZAT2  --------->HSFB2a(2)                    <----------DOF2        <--------   tgtgaaacggcacgcgagctatgggagacactcgagaacgtgtatgggaatgtgtcaaacttgactcgagtctttgaagtcaagaaggccattaacaacc  2189900                                                                                                -----                                                                                            ------>NtERF2                                                                                           --------->LBD16                                                                                         <---------LBD16                                                                                         --------->ATERF1(1)                                                                                         ------>ZmHOX2a(2)                                                                                        <------ZmHOX2a(2)                                <---------HSFB2a(2)                                    <---------ARR14(2)                                --------->HSFB2a(2)                                 --------->ALFIN1                              <---------LBD16                                     <---------ANAC58                       --------->ZAT14                                            <---------ANAC46                     --------->ANAC46                                             <---------ANAC58---                  --------->ZAT18                                  <---------HSFB2a(1) --------->ARR14(2) ---->TOE1(3)     --------->ZAT14           --------->ZAT18        --------->HSFC1(2)  --------->TCP20 ---->TOE2(3)     <---------ZAT18           <---------ZAT18        <---------HSFC1(2)  --------->TCP16(1) >MYB46(3)        <---------ZAT14        --------->MYB59        <---------At4g35610--------->LBD16--- -MYB111(2)     <---------GLK1(1) ---------->DOF2    --------->At4g35610        <---------At5g28300   ttagccaagtagacttggagttcactaaacacttcggaaagtttaggtcactatgggctgaacttgagatgcttcgaccaagtaccgtggatccggccat  2190000  Previous    Next  AGI:  At4g04410.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.7e-176 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element) Range:  from: 2189513    to: 2193761    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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