Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          =============                                                                                        ------>ZmHOX2a(2)                                      ------>NtERF2                               ------>NtERF2                                   --------->At4g35610                           --------->DEAR3(1)                        --------->AHL20(2)                                      --------->ATERF1(1)                       <---------AHL20(2)                                      <---------RAP2.3(1)                       --------->AHL20(2)                                      ------>NtERF2           ------->TEIL--------->AHL20(1)         <---------YAB1               <---------ATERF1(1)          <---------ALFIN1         <---------At4g35610                        <---------ANAC58      -         --------->ZAT14<---------AHL20(2)      --------->YAB1       --------->MYB52(1)==============     <-----------GT1   <---------AHL20(1)      <---------YAB1      --------->AtMYB61   <------ZmHOX2a(2) ---ICU4 --------->At4g35610 --------->YAB1 --------->At4g35610  ------->TEIL <---------ANAC58      -   tccagtttatctgcacccgaacaaatttaattcatgatgctgcctcagcatcataatcgatgtcatgaacctcaccgattgcgcctccgatctctccaat  2175600             --------->ARR14(2)             <---------ARR14(2)          <-----------------AGL1            <------ZmHOX2a(1)            ----------------->AGL2          <<<<<<<<<<<<<<<<<LFY          <---------TOE2(3)       <---------ARR14(2)                 <---------ARR14(2)     --------->ZAT6          <---------ANAC46                        --------->ARR14(2)    --------->ZAT14         <---------LBD16                   --------->At4g35610    <---------ZAT14      <---------GLK1(1)--------------->AGL15     <------ZmHOX2a(1) ==================HOX2a_HOX2a    --------->ARR14(2)          <---------At4g35610                  -- -------->TOE2(3)        --------->GLK1(1)----------------->AGL3 <------ZmHOX2a(1)        <xxxxxxxxxx ==================HOX2a_HOX2a--------->LBD16               <---------WRKY12       <-------TEIL    -- -------->TOE1(3)  ---------->DOF2--------->GLK1(2)       <-----------HVH21      <---------PCF2------   tacctcaacactgaggaactgaaaaggaattccgcgaatttggacccaaaatgggattgtggtcagaggaggattcaccaatgggtccatcgttgaagca  2175700                                                                                                 <---                                                                                                -----                                                                                                <----                                                     --------->HSFB2a(1)                     --------                                                     --------->HSFC1(2)                      <-------                                                    --------->ARR14(2)                  --------->LBD16              ---------->DOF2                       <---------ARR14(2)                 <---------LBD16          <-------GAMYB                          xxxxxxxxxxxxxxxx>smallRNA(i)         <---------ANAC58         --------->MYB52(2)                     <---------------------WRI1            ----------->RAV1(2)         <---------MYB46(3)                    --------->ANAC58                       <---------ANAC58 ------->ANAC58                                --------->ANAC58                       <---------ANAC46 xxxxxxxxxxxsmallRNA(si3)                  <-----------HVH21  ----------->GT1     <---------ANAC58 ------->ANAC58          ------->TEIL<-----------GT1--------->GLK1(2)             <---------ANAC58 --->YAB1--------->MYB55(2)          --------->YAB1<---------GLK1(2)             <---------MYB46(3)<-   taagcattcggtcgttgaaagcccatggacccctctgaatcaccatgtcaagcgattcttccgatgggaaaatgaattgaaattggttgcctgggatgat  2175800                                                                         <---------ANAC46                                                                       --------->LBD16                                                                      <---------ANAC46                                                                     --------->At4g35610                 <---------ANAC58                                    <---------At4g35610                 <---------ANAC58                            --------->GLK1(2)                <---------ZAT2                               <---------ARR14(2)                --------->ZAT2                               --------->ARR14(2)                <------NtERF2                               xxxxxxxxxxxxxxxx>smallRNA(i)               <---------RAP2.6(3)                         --------->HSFC1(2)               ------>NtERF2   <---------O2                <---------MYB46(3)  <---------bZIP60(2)   <------NtERF2                      --------->HSFB2a(1) ------ICU4   <---------ATERF1(2)                          <---------HSFC1(2) ---->ICU4    --------->ATERF1(2)                         <---------TOE1(2) -----YAB1    <---------RAP2.6(2)            ----------->RAV1(1)     <---------LBD16 ->ICU4       --------->RAP2.6(2)            --------->RAP2.6(2)    <-----------RAV1(1)         <---- --YAB1 <------ZmHOX2a(2)<---------ALFIN1   --------->ZAT18<---------HSFB2a(1)            xxxxxxxxxxx --------YAB1--------->RAP2.6(3)           ------>NtERF2  <---------TOE2(2)            <---------At4g35610   tatgacatggatcaagccggcttggccccaaactcgtggcattgaggccacaattgaacggaggttctgtctgcgggggataactggacagcccatgagg  2175900                       <---------PCF5                      <------MYB46(1)                      <------MYB83                      <-----------TCP11(1)                    <--------P                    <---------MYB52(1)                    --------->ALFIN1                   <-------GAMYB           --------->DAG2                   <---------MYB52(1)--------->RAP2.3(1)                  <---------MYB46(3) <------NtERF2                 <---------DEAR3(1) <---------At4g35610                <------NtERF2--------->AtMYB61                --------->ATERF1(1) --------->LBD16                                           <------NtERF2               ------>NtERF2 <---------ALFIN1                                                 -------              --------->DEAR3(1)   --------->DEAR3(1)                                         ------>NtERF2              --------->ATERF1(2)  <---------ATERF1(2)                                       --------              <---------ATERF1(2)  --------->ATERF1(2)                                       --------            <---------ATERF1(1)    --------->RAP2.3(2)                                       --------            --------->At4g35610    --------->RAP2.6(2)                  <---------WOX13(1)   --------            ------>NtERF2   --------->MYB46(3) --------->MYB52(1)   ------>NtERF2            --------            <---------At4g35610   --------->ERF1                   --------->DEAR3(1)       ---------           <-----------RAV1(1)    --------->RAP2.3(1)             <------NtERF2           --------->ANAC46      --------->ARR14(2)   ------>NtERF2  ---------->DOF2        ------>NtERF2 <---------ANAC58 ------->TEIL--------->ATERF1(1) <---------ATERF1(1)             <---------RAP2.3(1)      <---------DEAR3(1) --ZmHOX2a(1)--------->RAP2.3(1)<-----------RAV1(1)         <---------ANAC58   <---------ANAC46 xxxxx>smallRNA(i)<---------DEAR3(2)------>NtERF2           <---------ANAC58   <---------ANAC58   atgaaccggttctctgccgccggttgggccaccactgccgccgataaagtaactggagcattgtttgcgccgagattgatgtcttgtactgctcgccgca  2176000      ----------------->AGL1 -->LBD16                                                                      ---------->DOF2 ->RRTF1(2)                                                               ----------->GT1 ->RAP2.3(2)                                ---------->DOF2             <------ZmHOX2a(1) ->RAP2.6(2)                             <--------P                  <-----------RAV1(2) ->ANAC46                     <---------ARR11(3)                     <---------LBD16 ->DEAR3(1)                   --------->ARR11(3)                 --------->KAN4(1)          <-------- >RAP2.3(1)  *TSS       ----------->GT1----------->GT1         <---------GLK1(2)        <------ZmHOX2a(1)   aattgtctgccattttgtgaatgagtaagtaaaatctcaaggggtagaaagaagcgagagggatagattattcaggaggtataaaggcgaggaatttttt  2176100                                                          --------->CCA1(2)                                                     --------->LBD16                                                   <---------LBD16                                                  -------->P--------->ALFIN1                                                  --------->MYB52(1)               --------->bZIP60(1)            --------->ARR11(3)               <---------bZIP60(1)            <---------ARR11(3)        ----------->RAV1(2)                  <---------RVE1(1)     --------->GLK1(1)                       <---------GLK1(1)  --------->LBD16                            <---------CCA1(1) --------->ANAC58                            --------->GLK1(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ANAC46         ---------->DOF2   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->ORA47(1) --------->ANAC58   <---------YAB1          <---------ARR11(3)     --------->ANAC58 --------->DEAR3(1) -AHL20(2)------>ZmHOX2a(1)                 --------->ARR11(3)     --------->ANAC58 --------->MYB46(3)   gaaccgcaactcctgtaacatcacgatggaaagagaacatcatggagatatctaccggagagatgggccaaggaaattccataacaccggccaaattgct  2176200                                                               --------->ANAC58       <---------YAB1                                                               --------->ANAC58  <---------MYB46(3)                 <---------ZAT6                                ------>ZmHOX2a(2) <------MYB46(1)             <---------ZAT14             --------->At5g28300 <---------ARR14(2)  <------MYB83             --------->ZAT14            ----------->GT1      --------->ARR14(2) <---------AtMYB61         --------->AtMYB61        ---------->DOF2           <------ZmHOX2a(1)  <---------MYB52(1)         <---------ALFIN1     <-------GAMYB   --------->AHL20(2)               <--------P   <--------        --------->MYB46(3)   ----------->GT1  <---------AHL20(2)               <---------MYB55(1)       ------>NtERF2         <---------MYB46(3)         ---------->DOF2      <---------MYB46(3)   gaaaactgccaccactgtagtgggaagaagatggttaaaagaccgtaataaaatcgcccaaaggatcgccatttctaatcggttggtttttattctttgt  2176300                                                            ---------->DOF2                                                    ------>ZmHOX2a(2)                                                   --------->CCA1(2)                                                   <------ZmHOX2a(2)                 ---------->DOF2                                                  --------->ARR14(2)               <------NtERF2              --------->ARR11(3)                  <---------ARR11(3)              <---------HSFB2a(2)              <---------ARR11(3)                  <---------AGP1                  --------->HSFB2a(2)              --------->AHL20(1)                  --------->ARR11(3)             <---------ANAC46             <---------AHL20(2)  ----------->GT1  <---------ARR14(2)             <---------LBD16   <---------AHL20(2)      <---------ARR11(3)     --------->AGP1                 --------->ETT(1) <---------AHL20(2)        --------->ARR11(3)    <---------CCA1(2)     <---------ANAC58 --------->AHL20(2)--------->TOE2(3)            ----------->ARR10      <---------ANAC58 --------->DAG2 --DOF2   ------->TEIL ---------->DOF2  <-----------GT1   <---------YAB1    <----------DOF2----------   tatatatatatgtatatatattcttaaaagatttgttgtaaattactctgtagatctgtgatgaaagtggattacgagctttgtcgggaaagagtgacag  2176400                          <----------DOF2                   <---------ANAC55(2)                   --------->ANAC55(2)                                                 <------MYB83                   --------->ANAC58                                                    <------MYB46(1)                   --------->ANAC58                           <---------AHL20(2)      --------->MYB59                  <-------TEIL                            <---------RVE1(1)          <--------P                  --------->SPL7                         --------->ARR11(3)    <-----------HVH21               ------->GAMYB                             <---------ARR11(3)--------->ARR11(3)              --------->ANAC46                         <---------TOE2(3)   --------->GLK1(2) ->HVH21      --------------->AtSPL3             --------->ATHB12       --------->AHL20(2)          -   aagtgatacactttcaacggtacgtcttcttttgttttgttttgtttttgttgatttgagatttttaattcgcataaaatctgtcaagtaggttagagaa  2176500  Previous    Next  AGI:  At4g04407.1    Description:  transposable element gene. Ta11 non-LTR retroelement protein -related, temporary automated functional assignment Range:  from: 2174763    to: 2176013    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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