Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <--------P                                                                                       <-------GAMYB                                                                                      ----------->GT1                                                                              -------->HAHB4                                                                              --------->ATHB51                                                                              <---------ICU4                                                                              <--------ATHB1                                                                              --------->YAB1                                                                             --------->ICU4            <---------At4g35610                                              <---------AHL20(2)            --------->At4g35610                                              <---------YAB1 --------DOF2                    <---------ANAC46                        ------>ZmHOX2a(1) ---ANAC58==============================RAV                --------->GLK1(2) <---------ATHB51 ---ANAC58<-----------RAV1(2)   <---------At4g35610       <---------GLK1(2)--------->YAB1 ----------AG               <-----------RAV1(1)       ---------->DOF2   --------->TOE2(3)           < ----------AGL1     <---------AtLEC2                <---------REM1(2)   --------->TOE1(3)           -   ctttggtatgaggcagatgtttgtatggttgtgttgctgatttagaaaaccctctacaaagaatctctcaacttccttaataattgtagggttgatatca  2173900                                             <---------At4g35610                                <-----------HVH21                               --------->WOX13(1)    --------->ALFIN1                  ------>ZmHOX2a(1)                     --------->At4g35610 ------>ZmHOX2a(1)                           ----------->RAV1(2)       ----------->GT1      --------->GLK1(2)--------->At4g35610              <----------DOF2 --------->LBD16     <---------At4g35610 --------->HSFB2a(2)            --------->ZAT2 --------->LBD16 ---------HSFB2a(2)  <---------ZAT2      <---------HSFB2a(2)            <---------At4g35610 --------- -------->HSFB2a(2)  --------->ZAT2     <---------LBD16 --------->PCF5  --------->At4g35610<------ZmHOX2a(1)   tcccagaactcgtgataaaacgctgctgaaaatccatcaggtcctggagctcaatgtggtccagtactaaaaacagctgtctttatttcctgaggagtaa  2174000                                         <---------HSFB2a(2)                                       <---------LBD16                                     =================bZIP_DOF                                     --------->O2                                     --------->TGA1a                                    ------>MYB46(1)                                    <------NtERF2                                    ------>MYB83                                     <---------ANAC46                                   <---------ALFIN1                                  <---------ANAC58                                  ------->GAMYB                        <------ZmHOX2a(2)                                  =============MYC_MYB                --------->ARR14(2)                                 ----------------->AGL1 --------->ARR11(3)           <---------ANAC58                                 <-----------------AGL1 <---------ARR11(3)     --------->GLK1(2)                                 <-----------------AG   --------->GLK1(2)      --------->ARR11(3)  <---------ANAC58        ------>ZmHOX2a(1)             --------->ARR14(2)     --------->ARR14(2)  <---------ANAC58   <---------At4g35610 --------->HSFB2a(2)          <---------ARR14(2)  <---------ANAC46<-------TEIL <-----------GT1          <---------ARR14(2)     <---------ARR14(2) -->GT1     <-------TEIL----------->RAV1(2)---------->DOF2           <---------At4g35610            -   catgtcttgtgaggtccatattcatctcctgtgtaacccacttcggaaagtcttagaaaatctgagaatgcagatcagtagtatctggcgtagaactaaa  2174100                                                                                               ------                                                                                              <------ZmHOX2a(2)                                                                                           <---------ANAC58                         --------->At4g35610      --------->HSFB2a(2)                      <---------ANAC58                        <---------ARR11(3)        <---------HSFB2a(2)                  <-------GAMYB                       --------->REM1(1)     ------>ZmHOX2a(1)                        --------->MYB52(2)            --------->ANAC58        <---------ANAC58               ---------->ID1     <---------MYB46(3)            --------->ANAC58        <---------ANAC58 --------------->AtSPL8           <-----------RAV1(1) -------->ARR11(3)   ----------->RAV1(1)---------->ID1         <----------DOF2     ------------>MYB.PH3(2)   cagttcttggaagtaagaaatggcaacatctgcaacttccttgtctcctcttctcgcagtaccatctttgtcttctatggaaacaagtttgttgcgatct  2174200                                                                                          ------>ZmHOX2a(1)                                                                                      <---------ARR14(2)                                                                                      <---------ARR11(3)                                                                                      --------->ARR11(3)                                                                                      --------->ARR14(2)                   ----------->GT1                               <---------At4g35610 --------->RVE1(1)           <-----------GT1                                   <-----------GT1         --------->CCA1(1)         <-----------HVH21                                <---------AHL20(2)     --------->AHL20(2)      <----------DOF2                   ------>ZmHOX2a(2) --------->AHL20(2)  <---------HSFB2a(2) >ZmHOX2a(2)    <---------AtLEC2       <---------GLK1(1) --------->AHL20(2)   --------->HSFB2a(2)   cttcttgtctttgtcactgcatggaaatacttggtgtttcgatctccctcatgagtccatttatttctgctcttgtgcttccaaaaaatatcctcttcaa  2174300                 ------>ZmHOX2a(1)    <---------ZAT14             --------->ARR11(3)       --------->ZAT14              <---------DAG2      <----------TaMYB80           <---------TOE1(3)       *TSS<-----------RAV1(2)         <----------DOF2 <---------ANAC46           <---------TOE2(3)   ---------->ID1          ---------->DOF2             ----------->GT1      <------MYB46(1)     <----------DOF2 <------ZmHOX2a(1)   ---------->DOF2      <---------ANAC55(2)      <------MYB83      <---------At4g35610 --------->At4g35610--------->DAG2     <---------TOE2(3)   tataagcttggttaaggtcctgtttcagcttttgtctctctgcaggagatgaagttccaaaggaaaaagctttatctagattataacgtataatccccta  2174400                             ------------>CBF                        --------->AHL20(2)                        <---------AHL20(2)                        --------->AHL20(1)                        <---------AHL20(1)                               --------->ARR14(2)                   ------------>CBF                                      <---------ARR14(2)                   <---------MYB52(1)                          <---------HSFB2a(2)            -------                  --------->LBD16   ------>ZmHOX2a(1)          --------->HSFB2a(2) <-------TEIL                  <-----------HVH21 <----------DOF2    <-----------HVH21<------ZmHOX2a(1)  ----------                 --------->ANAC46<---------ATHB12  ---------->DOF2  --------->TOE1(2) --------->AtLEC2   agattagccaaggctctctccgtcaatttattccaatcctttctagcctctcccaaaggtcatttctgaaactaggatttggaggtccatacacaaagga  2174500                                --------->WOX13(1)                            --------->ANAC46                            --------->ANAC58                                                        -                        <-----------GT1                                                   --------->ZAT6 ---->GT1            <---------GLK1(1)                    --------->AHL20(2)         <---------HSFB2a(2) >DOF2       <-------TEIL   --------->ANAC58        ----------->GT1                  --------->HSFB2a(2)   aaaatagaaactagtttcattagatttcacaaggcaatctacaagattaggggattgaaataaaacagagacttctagtgaatgcttccataagactact  2174600                                                           ----------->RAV1(1)                                   ---------->DOF2      --------->ANAC46    --------->YAB1                                --------------->AGL15   --------->ANAC58   <------ZmHOX2a(2)                               <---------ANAC55(2)      --------->ANAC58  <---------ARR11(3)     ----    --------->AtMYB61      <-----------HVH21    ------>MYB46(1)   --------->ANAC58             <-----   --------->MYB46(3)     ----------->GT1       ------>MYB83 --------->bZIP60(2)               ------ --------->AtMYB61    <---------ZAT14         <---------MYB59--------->REM1(1)           <------MYB83 -------->MYB46(3) --------->At4g35610        --------->TOE2(3)   --------->ANAC58       <------MYB46(1)   aaaccaccactaaggcctatgggctgaactgttacatgaaagagaaaacctaattcacaagcaacatcacgaacacgatcatcttgttgtttggtttctg  2174700                                                                                                 <---                                                         <---------bZIP60(1)          <-----------RAV1(2)                                                     <-----------HVH21               --------->ZAT2                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ZAT2                                              <------NtERF2--------->WRKY18(1)       <---------At4g35610    <---------At4g35610                     <---------ANAC46                       <-----------RAV1(2) ------>DOF2                                <---------ANAC58<---------WRKY12       <---------HSFB2a(2) ----HSFB2a(2)                              <---------ANAC58<---------WRKY38(1)    --------->HSFB2a(2) --->HSFB2a(2)                              <---------DEAR3(1)             ------------>AtMYB77 -----   aaaggcatatgatgtccgagagatagcagtgtgttatctccttgaggcgtcgaactgtgaggtcaatgcctaaacctcgacagttccagcaggttatcct  2174800  Previous    Next  AGI:  At4g04405.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 5.6e-50 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus) Range:  from: 2171189    to: 2174335    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g04407.1    Description:  transposable element gene. Ta11 non-LTR retroelement protein -related, temporary automated functional assignment Range:  from: 2174763    to: 2176013    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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