Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           ---------->DOF2                 --------->ZAT6              --------->YAB1                        --------->GLK1(2)                       ---------              ---------->DOF2                       --------->ARR14(2)                     <-------TEIL     <--------P    ----------------->AGL2           <---------ARR14(2)         ----------->GT1 --------DOF2 <---------ICU4                  --------->DAG2                   <---------MYB46(3) --MYB59     <---------ATHB12                ---------->DOF2    ----------->HVH21     <---------AHL20(2)   cttttgggtaagtcaataaagaccaaaaaaagacatacttagttgaaaaaagggaatctacactatctgaccatagaagagttgttatttaagtccatca  2142400                                   <-----------GT1                                          <--------                                -------->ATHB1                                           --------->ALFIN1                                <---------ICU4                                         <---------ANAC58                                --------->ATHB51                                       <---------ANAC46                               --------->ICU4                                          <---------ANAC58                               <---------YAB1                               --------->CCA1(2)                               --------->AHL20(2)                          <---------ARR11(3)    ----                               --------->AHL20(1)      ------>ZmHOX2a(1)   --------->ARR11(3)    <--- >WOX13(1)     <---------ICU4  <---------AHL20(2)<---------ALFIN1--------->YAB1   <xxxxxxxxxxxxxxxxxx   aatacacactgtttcgataatgtctgtagcaaaattattacatctaaacccctactcctctatcaaatcagaagtgagatatatactaggcgtgtgtcag  2142500           <---------ARR11(1)        <---------CCA1(1)           --------->ARR14(2)        <---------RVE1(1)           --------->ARR11(3)       <---------ARR11(3)           <---------ARR11(3)       <---------GLK1(2)           <---------ARR14(2)       --------->ARR11(3) ---HVH21 <---------CCA1(2)      --------->HSFB2a(2)           <-----------GT1 ----->ARR14(2)               <-----------GT1              <---------ICU4 ------ARR14(2)      --------->ARR11(3)                   <---------YAB1                          <-- xxxxsmallRNA(se3)   <---------ARR11(3)                   --------->ICU4  ----------->GT1         ---   aaccgagacatcatatcttcaaagatttcatttttcgagattttttggagaataggtgtgataattaacatgagaacggttcaaattctaagagttgtat  2142600      <----------TaMYB80     <---------ARR14(2)     --------->ARR14(2)                                                       --------->ARR14(2)     ---------->TaMYB80         <---------ZAT18                               --------->GLK1(2)  <------MYB46(1)           --------------->AtSPL8                           <---------GLK1(2)  <------MYB83            <-----------GT1                <-----------GT1   --------->LBD16  <-------- <---------AtMYB61       <---------YAB1             <---------MYB52(1)    <---------HSFB2a(2) ---------RAV1(1)        <---------AHL20(2)        <-------GAMYB          --------->HSFB2a(2) ------>ALFIN1          --------->AHL20(2)  <----------DOF2             ------>ZmHOX2a(1) <---------ARR11(3)   gtgttggtatatgccttctctctcatttttattgtcccctctatccctttctccgttattctccagttttgttcctccagaatccaaaacaatatcaccg  2142700                                                      --------->At4g35610   <-------TEIL            -            <---------ARR14(2)             --------->DAG2                --------->LBD16            -      <---------DEAR3(1)                  ---------->DOF2              <---------LBD16              <   <---------ZAT2                    --------------->AGL15          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ZAT2                    <---------------AGL15      --------->TOE2(3)                   < ---GT1 <------NtERF2               ----------------->AGL3   <---------GLK1(2)                     --   attgaagctcggcgtttcccatttgttttgtcgaggtaaccatataaagtcgaagcagttgtcgattcttaattccggttcagttcgatttgtgttctga  2142800                                 --------->GLK1(1)                                 <---------GLK1(1)                              --------->LBD16                            ----------->RAV1(2)                          --------->ARR14(2)                          <---------ARR14(2)                         <------NtERF2                         <---------At4g35610                         --------->ATERF1(1)                        <<<<<<<<<AtERF-1                        <---------ERF1                        <---------ATERF1(1)                        <---------RRTF1(1)                        <<<<<<<<<AtERF-2                        <<<<<<<<<AtERF-7                        <<<<<<<<<AtERF-5                        <<<<<<<<<AtERF-4                        <<<<<<<<<AtERF-3                        ------>NtERF2                        <---------ORA47(2)                        <---------RAP2.3(1)                        <---------DEAR3(2)                          <---------ARR11(3)                       <---------RAP2.6(2)                 <------NtERF2                       <---------RAP2.3(2)                ------>NtERF2                       <---------RAP2.3(3)                --------->LBD16                       *TSS --------->At4g35610          --------->ATERF1(2)                       <---------ANAC58                  --------->DEAR3(1)                       <---------DEAR3(1)                <---------DEAR3(1)                       <---------ATERF1(2)               <---------ATERF1(2)              <---------ANAC46------>ZmHOX2a(1)         --------->ATERF1(1)            <-----------TBP------>NtERF2                <---------LBD16      <---------LBD16  <---------ANAC46                ------>NtERF2--------->ARR11(3) -------->AHL20(2)     <---------DREB2C(2)             --------->ZAT2 -------->AHL20(1)     <---------RRTF1(3)              <---------ATERF1(1) ---------AHL20(1)     <---------ANAC58               ----------->HVH21 ---------AHL20(2)     <---------RRTF1(2)             --------->DEAR3(1) ------->AHL20(2)     --------->RAP2.6(3)           --------->At4g35610  <---------LBD16   aataaatttctgggttttgtagatggcggctcctgaactccctcatcgtataatcgctgccggcgaagaagttcttggggagagggcaaatgtttacaac  2142900                                                                                <-------GAMYB                                                                               <---------AtMYB61                                                                               --------->MYB111(1)                                                                               <---------MYB46(3)                                                                               --------->MYB111(2)                                                                               --------->MYB55(2)                                                                             <---------ANAC46                                                                             <-------GAMYB                                                                             <---------ANAC58                                                                             <---------ANAC58                                                                            <------MYB46(1)                   --------->ICU4                                          --------->MYB55(2)              --------->ANAC46                   --------->LBD16           <---------MYB46(3)            <---------AtLEC2                   <---------LBD16            <---------MYB55(1)           <---------REM1(2)                 --------->ARR14(2)          <---------MYB52(1)       --------->GLK1(2)                 --------->ANAC58     --------->HSFB2a(1)      --------->ARR14(2)                 --------->ANAC58     <---------HSFB2a(1)     <---------GLK1(1)      <---------GLK1(2)   --------->ANAC46   <---------ARR14(2)     ------>ZmHOX2a(1)<---------GLK1(2)      <---------ARR14(2)  --------->ANAC58  <---------GLK1(1)--------->GLK1(1) --------->MYB52(2)      <---------ARR11(3)  --------->ANAC58  --------->GLK1(1)<---------GLK1(1)<--------P       <-----    <---------YAB1<----------DOF2   <------ZmHOX2a(1)      <------ZmHOX2a(1)<------MYB83<-----------GT1   aagatgaagattctacatggcattatcgacgcattagaggaagacgaaatccggctcatcaggaactctcctctcggtgggttgttggattttccaaaca  2143000                                                                      ------>ZmHOX2a(2)                                                                     <------ZmHOX2a(2)                                                                     --------->CCA1(2)                                                                    <---------ARR14(2)                                                                    <---------AGP1                                                                    --------->AGP1                                                                    --------->ARR14(2)                                                                    --------->ARR14(3)                                                                    <---------ARR14(3)   ----------->RAV1(2)      <---------At4g35610                     <---------ARR11(3)  ------>NtERF2         <---------DAG2                              --------->ARR11(3) --------->ANAC58       <----------DOF2                            <---------GLK1(1) --------->ANAC58  <---------ANAC58<------MYB83                   ----------->ARR10         --------- --------->ANAC46  <---------ANAC58<------MYB46(1)            --------->MYB52(1)          --------->REM1(1) ----MYB52(2)   <----------DOF2 <---------AtLEC2        ---------->DOF2    <--------P     <---------ALFIN1   aacccgcctggtctactactttcgggctttatctgcttggtcgcaagttggacattgacaaagccaacgagatctgggtagtttatgctggtacacctgt  2143100                                                                                     --------->At4g35610                                                                                     <---------At4g35610                                      <---------ANAC58                            <---------At4g35610                                      <---------ANAC46                           <---------ARR14(2)                             <---------ANAC58       ----------->RAV1(2) ---------->DOF2                             <---------ANAC58   <---------ARR14(2)    --------->ANAC58            <--                            --------->MYB52(2)  --------->ARR14(2)    --------->ANAC58            ---                        <------MYB46(1)<----------DOF2   <---------ANAC58        --------->ARR14(2)                        <------MYB83  <---------ANAC58   <---------ANAC58       --------->ZAT18  <--- -->RAV1(2)       <-------TEIL       <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->MYB52(1)     ----------   tcgattttctctgcgagagtttcatttggttactggccttgcttgtgggcgataccctgacttgccaaaaaaacgaaagaagggaactgctgagaaagag  2143200          <---------ZAT18                                                                          <-          <---------ZAT14                                                                          --          --------->ZAT14                                                                          <-        --------->ANAC46                                                                        <----       <---------At5g28300                                                                      <----   <---------MYB52(1)                                                                           <---- <---------ANAC58                                 <---------ZAT6                               <----- <---------ANAC46                               <---------ANAC58                            <-------- <---------ANAC58                               <---------ANAC46                       ------>ZmHOX2a(2) -------ARR14(2)                                <---------ANAC58                      <------ZmHOX2a(2) ------>GLK1(2)                             ------->TEIL<-----------GT1              <---------ARR14(2) ------GLK1(2)                             <---------CCA1(2)                         --------->ARR14(2) >DOF2<-----------GT1                 <-----------GT1   --------->YAB1         --------->DEAR3(2)----   attccgttttacagcactctgtttgagcttgagtctgatgttactgtatctcgtgttatcacgatgcttaagaagaaggttaccgacgatccgtctttgc  2143300  Previous    Next  AGI:  At4g04390.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28250.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) Range:  from: 2142823    to: 2147222    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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