Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->ARR11(3)      <---------ARR11(3) ------>ZAT2 ------>ATERF1(1) -----GAMYB -------ZAT2 ----NtERF2 -------At4g35610 ------>At4g35610 ------RAP2.3(1) ------ERF1 ------ATERF1(1) -->NtERF2                 --------->YAB1 -----RAP2.3(3)           <---------YAB1 -----RAP2.3(2)        --------->ICU4                         ----------->GT1 -----DEAR3(1)         <---------YAB1                      <------ZmHOX2a(1) -----RAP2.6(2)     <---------YAB1                      --------->HSFB2a(2)  --------->At4g35610 --->RAP2.6(3)    ----------->GT1                       <---------HSFB2a(2)--------->ZAT18   <------- ->DOF2--------->CCA1(2)--------->YAB1             <---------TOE1(2)       <---------ZAT18 <---------ZAT14   ggctgagagatattagaaacttgttattatcataagcttgtaacagagtttcttaggtctaggagagtgatatagagtgagcttgaatactagtgaaggg  2138200                                                       --------->HSFB2a(2)                                                       --------->LBD16     <---------O2                                                       <---------HSFB2a(2) <---------TGA1a   --------                                                  <---------ARR14(2)   <---------HSFB2a(2)   <-------      <-----------HVH21                           --------->ARR14(2)   --------->HSFB2a(2)   --------    --------->ALFIN1<---------YAB1              <---------ZAT18        <-----------RAV1(2)  --------- --ANAC46 <---------ANAC46    --------->ZAT6 <---------ANAC46      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   tatcgagtggtcacttgtaattctccttgtaaacactatctctgatttagtggattccgagaacagtctcgtcccagacgtagcatctattgatgtgaac  2138300       ------>MYB46(1)       ------>MYB83     <---------MYB59     <---------MYB46(2)                                     <---------ANAC58                --------- ->ZAT14                                                    <---------ANAC58                <-------- --ZAT14                                                   <---------LBD16            <---------ALFIN1 ->ZAT18        <---------ANAC46            <---------YAB1<-----------GT1            <---------ZAT14 -->HVH21     <---------ANAC46        <---------ZAT18<---------YAB1                  --------->ZAT14   tgggttaccaaacttgctgtgtgttctctgtttctgttcttgcactctcattgttcttattttcgggtctacttgtgttctgttctcaacactgttgtaa  2138400                     <---------ANAC46                                              <------MYB83  <---                  <---------AtMYB61                                                <------MYB46(1)              <---------ANAC58     <---------MYB46(3)                            <---------WOX13(1)              <---------ANAC58 <------MYB46(1)                                  <---------GLK1(2)<---          <---------ANAC58<---------ANAC46     --------->DAG2           <---------ICU4           <--- ------->GAMYB<---------ANAC46 <------MYB83   ---------->DOF2         --------->ARR14(2)        ----- -->GT1 <-----------GT1 <---------ANAC46   --------->ANAC58           <---------ARR14(2)        <---- -REM1(1) <---------ANAC58<---------YAB1   --------->ANAC58<---------YAB1 ------>ZmHOX2a(1)<---------TOE2(3)   caacgacaattttcttgcttgtggtgttgtgtttggtttgttctcaagaaaagtcgacgttttgagtgatcaaatccttacagattggtattagaggttt  2138500                                ------------>MYB.PH3(1)                        <---------ZAT6                    <---------ZAT14                    --------->LBD16                  <---------LBD16       <-----------GT1                                       <------ ------MYB46(3) --------->ARR14(2)  --------->At5g28300                                       ------- ---MYB46(1)    <---------ARR14(2) ----------->GT1             <---------TOE2(3)   <---------MYB46(3) ---MYB83<---------MYB52(1)   <---------MYB52(2)            --------->CCA1(2)      <---------ANAC46 ---->MYB59--------->MYB52(2) --------->MYB46(3) --------->HSFB2a(2)            <---------MYB46(3) -----AtMYB61 <---------MYB46(3)--------->MYB52(1)         --------->ARR11(3)  <---------AtMYB61-----   ggttacagtccgtttgtggttccgcagtgttaacaaacggttaaaccatgtctggagcaaggatataggttgagaagttcgatggtcgtggagattacac  2138600                                                                       --------->DEAR3(1)                                                                      <------NtERF2                                                                     ------>NtERF2                                <-----------RAV1(1)                 --------->DEAR3(1)    ---------->DOF2  --------->ZAT18                             ----------->HVH21                ---  *TSS               ----------->HVH21                       <---------At4g35610                  <-- -----------AGL1   --------->At4g35610                       --------->At4g35610           <-------TEIL ---------->AGL1   <---------At4g35610 <---------ANAC58      --------->ZAT2               --------->GLK1(2) ---->ANAC46     <---------CCA1(2)     <---------ANAC58     --------->GLK1(2)       --------->CCA1(2)   gatggggaaagagaagctcatagctcacagtgatatgttgggcttgagttctgttctaagagaagctgagacgccgatggggaaagatagagattcagag  2138700                                         <----------DOF2                                      <------                                       <---------HSFC1(2)                                     -------                                  --------->ALFIN1                 ---------->DOF2  <---------ANAC58   --------->At4g35610       ---------->DOF2          --------->DAG2                <---------ANAC58 ------>GLK1(1)         ----------->GT1--------->HSFC1(2)  <------ZmHOX2a(1)        <---------ANAC46 -------GLK1(1)---------->DOF2 --------->DAG2        ---------->DOF2              <---------YAB1   aaatctgatgaagaagagaaagaagaatgtgaaaaggtggaagcttttgaagagaaaaagaggaaaactagaagcaccatcgttttgagtgtttcagata  2138800           <---------LBD16        <---------HSFC1(2)        <---------HSFB2a(1)        --------->HSFB2a(1)                          <---------CCA1(2)                       <-------        --------->HSFC1(2)                         --------->CCA1(2)                         --------   <---------HSFB2a(2)                            <---------ARR11(3)                         --------   --------->HSFB2a(2)          ---------->DOF2   --------->ARR14(2)          <-------TEIL   <------- ---ARR14(2)   --------->ARR14(2)   --------->ARR11(3)       --------->At4g35610            <-------- -->ARR14(2)   <---------ARR14(2)   <---------ARR11(3)       <---------At4g35610   <---------ARR11(3)   gggttttggaagcctcggataggctctacatgtctaaagctctcccaaaccagatatatctgaagcagaagctctatagattcaagatgtctgagaatct  2138900       <------MYB46(1)       <------MYB83       ----------->GT1                                                        ======================= --ARR14(2)                              <---------ARR14(2)                   <------ZmHOX2a(2)    <- ->ARR14(2)               --------------->AGL15                              <-----------ARR10    <-- ->GLK1(2)                <---------------AGL15  --------->ARR11(3)         <------ZmHOX2a(1)     --- ----ARR10               <-----------------AGL3  <---------ARR11(3)   <---------At4g35610   <-------- -GLK1(2)            ------->TEIL        --------->ARR14(2)           --------->At4g35610<-----------RAV1(1)   gtctatggaaggtaatatcgatgaatttcttcatatagtagcagatttagagaacttaaatgttttagtctctgatgaggatcaaaccatattgttgttg  2139000        ------>ZmHOX2a(1)                                                              ------>NtERF2       --------->TOE2(3)                                                            --------->At4g35610 <-----------GT1               <---------ARR14(2)                                   --------->ZAT2 ==============HOX2a_HOX2a     --------->ARR14(2)                                   <---------At4g35610 ----------HVH21              <------ZmHOX2a(1)                                    <-----------RAV1(1) -------bZIP60(1)           <---------TOE2(3)        <--------P      --------->ANAC55(2)           -- ------>bZIP60(1)           <---------TOE1(3)  <---------AGP1        <---------ANAC55(2)    --------- -MYB46(3)             --------->At4g35610 ---------->DOF2  <---------ZAT14      <---------At5g28300   atgtcacttcctaagtcgtttgatcagttgaaggatactttgcaatatagctctggtaagactgtattgacacttgatgaagttactgctgccatttatt  2139100  Previous    Next  AGI:  At4g04380.1    Description:  transposable element gene. copia-like retrotransposon family, has a 7.5e-248 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 2138602    to: 2142188    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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