Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <---------ANAC58                             <---------ANAC46                      ------>ZmHOX2a(1)                     --------->TOE2(3)                      <---------YAB1       ---------->DOF2    <-----------RAV1(1)      <---------ANAC58               <---------TOE1(3)   ------>ZmHOX2a(1) -------->YAB1   --------->GLK1(1)           <---------ANAC58                  --------------->AGL15 --------ATHB12  <---------GLK1(1)           <---------ANAC58   <-------TEIL   <---------------AGL15 ----->WOX13(1) ----------->ARR10      <---------DAG2       <---------TOE2(3) ----------------->AG -->RAV1(2)    <------ZmHOX2a(1)       <----------DOF2 <---------ZAT6      --------->GLK1(1)   aatcatatgttgcaagaggacatcctcaatggcttgctcaactttttgcgaatgagagtgttaagattcatgaacacatttcctaaagaagtttgaaatc  2020000                                                      <---------ANAC58                                                  <-------GAMYB                                          <------MYB83<---------ANAC58   --------->HSFB2a(1)                    <------MYB46(1)   --------->KAN4(1)--------->ANAC46     --------->MYB46(2)   <---------HSFB2a(1)                   --------->MYB59   <---------KAN4(1)--------->ANAC58    <--------P<---------At4g35610                          ------   <---------HSFC1(2)            ---------->DOF2  --------->At4g35610                 xxxxxxxxxxxxxxx   --------->HSFC1(2)     ---------->DOF2--------->MYB111(1)  ---------->DOF2   <---------REM1(2)  <---------KAN4(2) --------->ANAC58    <---------MYB55(1) ---------->DOF2  --------->ZAT6     <-----   ggagaatgttctaaacgagaacaagctacaaaggagaaagaggtaggttttcagttgccttcaaagaagcgataactcactctacatagtctgtcaagat  2020100                                                                              ---------->DOF2   <---- --->ARR11(3)        ---------->DOF2                               <---------TOE2(3)            ----- xxxxxxxx>smallRNA(le3)          <---------AHL20(2)                <---------YAB1        --------->ZAT14 ----ARR11(3)    <------ZmHOX2a(1)                            <------ZmHOX2a(1)          <---------ZAT14   gtttttggtatgtttaacaggaacaaaggaaggaattttttggctcatgcattgtcatcttgcaggattaagaatgttgacaaagacagagtttagtcct  2020200                                                                               <---------ALFIN1                                                                              --------->MYB46(3)                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             >>>>>>>>>>>>>>>>>LFY                                                                            <-----------GT1                                                                          <-----------HVH21                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                        ------->TEIL                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                  ----------->HVH21                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                                --------->ANAC55(2)                                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------DOF2                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ->ZmHOX2a(1)                  --------->ARR11(3)     <---------YAB1 <---------WOX13(1)            --   ttcaatcgggtttaagtctaaattttagtctaatatgttgaagtttaacagggattatcaattttcatgtgatggatgtcaccactgtattaatacgact  2020300                                --------->PCF2                      <------MYB83                              --------->MYB59                       <------MYB46(1)                           <---------GLK1(2)                        <---------MYB46(3)                           <xxxxxxxxxxxxxxxxsmallRNA(s)     --------->ARR14(2)                        --------->YAB1         <---------ARR14(2) <--------P                  --------->ANAC58             --------->ARR14(2) <---------MYB55(1)                  --------->ANAC55(1)         <---------MYB52(1)  <---------MYB52(1)                  --------->ANAC46           <---------DEAR3(2)  <---------MYB52(1)                  --------->ANAC58 <---------ALFIN1         <---------ARR14(2)           -------->P                  --------->ANAC55(2)  ---------->DOF2----------->HVH21                 <-----------GT1 --------->GT1    <---------ANAC55(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)<---------AtMYB61<-----------GT1<-   agagaaaaaaaaaaaaaaaaacgtaatcagattaggcccacttaagccggttctccttgacagaaccggttggttttttctgtgaattactaaccagttt  2020400            ------>ZmHOX2a(1)           --------->TOE2(3)           --------->TOE1(3)          ------>ZmHOX2a(2)         <------ZmHOX2a(2)                                  --------->ANAC46        <---------ARR14(2)                                --------->AtMYB61              <---------ANAC46        --------->ARR14(2)                               --------->MYB46(3)              <---------ANAC58      <---------DEAR3(2)                               <-----------GT1     --------->HSFB2a(2)     --------->ETT(1)                             <---------ANAC46         <---------HSFB2a(2)   <-----------HVH21              ---------->DOF2 ----------->GT1       --------->ARR14(2)  <-----------RAV1(1)             *TSS          ----------->GT1         <---------ARR14(2) ----------GT1       --------->TOE2(3)      <------ZmHOX2a(1)           --------->GLK1(2)<---------ANAC58   tatactgtcggatccttaaaaaacctcataaacccttgaagctcgaggaattgtgtaaaaccactccaatggcgattctggacaaattgtttcgagcatc  2020500                                                             --------->ANAC58                                                             --------->ANAC58             <------ZmHOX2a(2)                          <-------PIF5         <------NtERF2                                  ------->PIF5        <---------LBD16                              <---------ALFIN1                  --------->ANAC58        --------->LBD16                           --------->YAB1         <---------DEAR3(1)        ------>NtERF2                            <---------ATHB12       ---------->ID1 --------->ANAC58       <---------ANAC58                          --------->MYB46(3)  <-------TEIL      --------->ANAC46       <---------ANAC58                        --------->WOX13(1)<---------ARR11(3)  <---------ALFIN1       <---------ANAC46                     --------->ANAC58 <---------TGA1a        --------->MYB46(3)  <---------AtLEC2                          --------->ANAC58 --------->TGA1a      --------->ANAC46   tcgagcatggcgcggatcactctctcattctaaatccatggttccttcgcaatcaccacgggcacgagagcttcgtcgctgtttccaccacggtactcta  2020600                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                             <-------                                                               <---------ICU4              <---------                                                     <---------YAB1                       <---------HSFB2a(1)                                       <---------ANAC58       --------->ICU4              --------->HSFB2a(1)                  <---------YAB1       <---------ANAC58>>>>>>>>>ARR2                      <---------HSFC1(2) <---------ARR14(2)          ------>ZmHOX2a(2)<---------ARR14(2)                          --------->HSFC1(2)   gcgaattcaatttgtagataatttttggtgatcccttgatttcgagtgaatccatttgattgtaagaattgctaattagtttaaaaattggaactttcgg  2020700 ---->LBD16 ----LBD16 --->HSFB2a(2) ----HSFB2a(2)                       <---------MYB52(1) ---ANAC46                          --------->TOE2(3)             --------->YAB1 ---LBD16                     <---------YAB1                     <---------YAB1 --LBD16            <---------MYB52(1)      <---------YAB1    --------->ICU4 -DOF2         --------->GLK1(2)  ------>ZmHOX2a(2)         ------->TEIL     --------->YAB1   ggaattgagaacacaagaagctgttttgtcttatgatcccttaattttgatttttggtcatgtacttatgatgaagaaatgatactacttctctgtccaa  2020800                                                                                                   --                                                                                                   --                                                                                                  <--                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)                                                                                        --------->ARR11(3)                                                           ----------->GT1              <---------ARR14(3)                                             <------ZmHOX2a(1)                          --------->ARR14(3)                                            --------->ANAC58                            --------->ARR14(2)             <---------MYB52(1)             --------->ANAC46          ----------->GT1   <---------ARR11(3)         ---------->ID1                     --------->ANAC58        ---------->DOF2     --------->AGP1  --------->GLK1(2)                --------->YAB1      <---------At4g35610              <---------ARR14(2) <---------GLK1(2)              <----------DOF2        --------->At4g35610--------->WOX13(1)    -----   gtagaatctttgtctcttagttaaaagtttgggtctttgatattgcaggaaactttgagcagagtaattcaaaagtaaatcaagtcttgagatcttgcag  2020900  Previous    Next  AGI:  At4g04175.1    Description:  transposable element gene. pseudogene, similar to putative reverse transcriptase, blastp match of 28% identity and 7.7e-08 P-value to GP|14018103|gb|AAK52166.1|AC084831_20|AC084831 putative reverse transcriptase {Oryza sativa} Range:  from: 2018786    to: 2019961    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g04180.1    Description:  AAA-type ATPase family protein. similar to cell division cycle protein 48, putative / CDC48, putative [Arabidopsis thaliana] (TAIR:AT3G53230.1); similar to 26S proteasome regulatory complex subunit p42D, putative [Arabidopsis thaliana] (TAIR:AT1G45000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40865.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959) Range:  from: 2020434    to: 2023990    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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