Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <xx                                                                                                -----                                                                                                <xxxx                                                                                                xxxxx                                                                                                <----                                                                                               xxxxxx                                                                                              -------                                                                                              -------                                                                                             xxxxxxxx                                                                                             --------                                                                                            <--------                                                                                            <xxxxxxxx                                                                                            ---------                                                                                           xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <------NtERF2                                                                                         --------->LBD16                                                                                        --------->ANAC46                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                   ----------->HVH21                                   <---------HSFB2a(2)                                 --------->At4g35610                                   <---------LBD16                                 ----------->RAV1(2)                              --------->CCA1(2)                                 --------->ANAC55(2)                             <---------ARR11(3)                                 <---------At4g35610                             --------->ARR11(3)                                 <---------ANAC55(2)                             --------->ARR14(2)         <---------ARR14(2)  <-----------HVH21           <---------ICU4          <---------ARR14(2)<x         --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->TOE1(2)<xxxxxxxxxxxxxxxxxxxx ------>ANAC58            <xxxxxxxxxxxxxxxxsmallRNA(s)   --------->YAB1        ----------->ARR10----- ------>ANAC58         --------->ANAC58                 --------->ICU4        <------ZmHOX2a(1)------ ------>ANAC46         --------->ANAC58                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxx --->ARR14(2)        ---------->DOF2            --------->CCA1(2)  <------ZmHOX2a(1)  xxxxxxxxxxxxxxx -->RAV1(1)         --------->ARR14(2)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxx   acgcgaatgggtatttggaccagataagcccagtcacctgatgcagggagataagcgaataatgacctaggaactgaagaggagatattcgcggagcgga  1944000                          <---------ARR14(2)   <------ZmHOX2a(2)                          --------->ARR11(3)  --------->ARR11(3)                          --------->ARR14(2)  <---------ARR14(2)                         <xxxxxxxxxxxxxxxxsmallRNA(s)                         --------->GLK1(1)    <---------ARR14(3)             ----------->HVH21                <---------ARR11(3)             <xxxxxxxxxxxxxxxxsmallRNA(s)     --------->ARR14(2)            <-----------------AGL3            --------->DEAR3(2)                --------->ARR14(3)            ------>ZmHOX2a(2)            <xxxxxxxxxxxxxxxxsmallRNA(i)     --------->At4g35610            ========================HOX2a_HOX2a            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          <------ZmHOX2a(2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                         <---------ARR11(3)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->LBD16        <---------ARR14(2)      <xxxxxxxxxxxxxxxxsmallRNA(s)    ------>ZmHOX2a(2)                   --------->ARR11(3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->GLK1(1)       <---------ANAC58      <---------LBD16    <xxxxxxxxxxxxxxxxsmallRNA(i)             ------->PIF5     <xxxxxxxxxxxxxxxxsmallRNA(s)    <------ZmHOX2a(2)            <-------MYC3    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxx>smallRNA(i)<---------ANAC46   --------->ARR11(3)   <xxxxxxxxxxxxxxxxsmallRNA(s)              <-------MYC2   <---------ARR11(3)   <xxxxxxxxxxxxxxxxsmallRNA(i)              ------->MYC3  <---------GLK1(1)     <---------ARR14(2)   <---------GLK1(1)    ------->MYC2  --------->GLK1(1) xxxxxxxxxxxxxxxx>smallRNA(s)   <---------SPL7 ------->PIF4  <---------CCA1(2)------>MYB83      --------->GLK1(1)            <-------PIF4 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------LBD16        <------------OsbHLH66 <xxxxxxxxxxxxxxxxsmallRNA(s)        <---------GLK1(1)         <---------ALFIN1 xxxxxxxxxxxxxxxx>smallRNA(s)<-----------RAV1(2)   ----------->HVH21 <---------ANAC58 xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ARR14(3)       -------->P   --------->AGP1 -->TEIL   --------->At4g35610      --------->ARR14(2)       xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxsmallRNA(i)--------->ARR14(2)<---------At4g35610==============MYC_MYB xxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ARR14(2)    <---------ZAT2  <---------AGP1 -----ARR14(2)  <---------At4g35610 <---------ARR11(3)    --------->ZAT2 <---------CCA1(2) xxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->ARR11(3) <xxxxxxxxxxxxxxxxsmallRNA(i) ---->HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)------>ZmHOX2a(2) ------->MYC4 -->ZAT18 --------->ARR14(2) <---------LBD16 <---------At4g35610 <---------TGA1a xxxxxxxx>smallRNA(i)   ---------->TaMYB80--------->LBD16 --------->At4g35610 ->ATERF1(1)<---------MYB52(2)      <-----------ARR10--------->SPL7 <-------TEIL -At4g35610xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i)=========================HOX2a_HOX2a xxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(s)<-----------------AGL2 >At4g35610<---------At4g35610  ======================HOX2a_HOX2a--------->TGA1a xxxxxxxx>smallRNA(si3) <---------KAN4(2)--------->ANAC46 <---------At4g35610 xxxxxxsmallRNA(i) ------>MYB46(1) ====================HOX2a_HOX2a<-------PIF5 xx>smallRNA(i) --------->At4g35610===================HOX2a_HOX2a--------->O2<---------------AGL15 xx>smallRNA(s) <---------bZIP60(2)<------ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ARR14(3)<---------DEAR3(1)----------->ARR10 xxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---->ARR14(2)  <---------ANAC58=======================HOX2a_HOX2a<-------MYC4             --------->ANAC58 >NtERF2  <---------ARR14(2) <---------HSFB2a(2)<xxxxxxxxxxxxxxxxsmallRNA(i)----------------->AGL3 xxxxxxxxxxxxxxx>smallRNA(fl3)  =============HOX2a_HOX2a <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->ANAC58 x>smallRNA(i)  <---------ANAC58<------ZmHOX2a(1)<---------LBD16<xxxxxxxxxxxxxxxxsmallRNA(s) <------ZmHOX2a(1) xsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->LBD16<---------O2--------------->AGL15<--   cctgatatctcggaactgacctgccgaatatccaggaggatctccgcagatcccggacggagctaccacgtgcgtagatctatataagggagcaaggacg  1944100                                              --------->ZAT6                                           --------->ZAT14                                    <------                                          <----------DOF2                                ---------->DOF2                                          <---------DAG2                                --------->AHL20(2)                                       <---------ALFIN1                                 <---------AHL20(2)                                     --------->ANAC58                                <--------HAHB4                                     --------->ANAC58                                --------->ATHB51                                 --------->ANAC58                                    <---------ICU4                                 --------->ANAC58                                   --------->ICU4                                 <---------ALFIN1                                   <---------YAB1                                <---------ZAT18                         ---------->DOF2<---------YAB1 -------ANAC46        <---------ZAT18<---------ALFIN1          <-----------GT1    --------->YAB1   acttgtaagacacattcaatctagttcacattggcacacacacactttacacttgtaatctcatttcacattgtaaaagctctgtcataattaaagtcca  1944200                                                <----------DOF2                                          --------->ZAT6                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                      ------>ZmHOX2a(2)                                      <-------                                     --------->CCA1(2)                                    xxxxxxxxxxx                                     <------ZmHOX2a(2)                                xxxxxxxxxxxxxxx                                    --------->ARR11(3)                               xxxxxxxxxxxxxxxx                                    <---------ARR14(2)                              --------->GLK1(1)                                    --------->ARR14(3)                              <---------GLK1(1)                                    <---------AGP1                                  xxxxxxxxxxxxxxxxx                                    --------->AGP1   --------->YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                    --------->ARR14(2)     --------->YAB1          >>>>>>>>>>GATA-1                                    <---------ARR14(3)     --------->TOE1(3)    xxxxxxxxxxxxxxxx>smallRNA(s)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->TOE2(3)  <---------ANAC46------- -TEIL        <-----------GT1       <---------ARR11(3)   <---------ARR11(3)   <---------ZAT6 --------   ttcgttcttagcaatataactctcaaggtttcagtgaagatctagcactcctttctcataatcttaaatacaaatctctagtgtggatttcagaacccac  1944300            --------->ALFIN1          <-----------RAV1(1)       ------>NtERF2      <---------ANAC46      --------->DEAR3(1)      --------->RAP2.3(2)      --------->RAP2.3(3)     <xxxxxxxxxxxxxxxxsmallRNA(s)     --------->RRTF1(1)     --------->ATERF1(1)     --------->DEAR4(2)     <------NtERF2     --------->ORA47(2)     --------->RAP2.3(1)    <---------RAP2.3(1)    <xxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          <------ZmHOX2a(2)    <xxxxxxxxxxxxxxxsmallRNA(se3)                                           --------->ARR14(2)    ------>NtERF2                                                           <---------ARR14(2)    <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <------ZmHOX2a(2)    <---------RRTF1(1)                                              --------->YAB1    <---------ATERF1(1)                     <---------At4g35610     ------->GAMYB   <xxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->At4g35610    --------->MYB46(3)   <---------DEAR3(1)                   --------->DEAR3(1)        ------>MYB46(1) ----------AGL3                      <---------ALFIN1             ------>MYB83------>ZmHOX2a(2) xxxxxxxxx>smallRNA(se3)      --------->KAN4(2)                  --------->MYB52(1) xxxxxxxx>smallRNA(l2)       --------->KAN4(1)                 --------->MYB46(3) xxxxxxxx>smallRNA(si3)     <------ZmHOX2a(2)             --------->YAB1    *TSS xxxxxx>smallRNA(le3)      --------->ARR11(3)           <------------CBF    ------->TEIL ---->RAV1(1)              <---------ARR11(3)        ------------>CBF--------->ARR11(3) --------->AGL3<---------PCF2<---------KAN4(1)       xxxxxxxxxxxxxxxx>smallRNA(i)                <---   atttggcgccgtctgtggggacagaaatagatcattccaacaccgaagctaacacatcaattgtgaccaacgatcatggatcccaattcatccaattcat  1944400                                                              ------>ZmHOX2a(2)                                                              ===============HOX2a_HOX2a                                                             <---------GLK1(1)                                                             ================HOX2a_HOX2a                                                             --------->GLK1(1)                                                            <-----------ARR10                                                    ------>MYB46(1)                                                    ------>MYB83                                                  --------->DEAR3(1)                                                  <---------ALFIN1                                                  --------->AtMYB61                                                 --------->At4g35610                                                 --------->ATERF1(1)  --------->HSFB2a(2)                                                <---------ATERF1(1)   ------>ZmHOX2a(1)                                          --------->SPL7    <---------ARR11(3)          -------->P                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------ANAC58              --------->MYB52(1)     ------->TEIL       <---------ANAC58           --------->bZIP60(1)--------->MYB46(3)   ------>ZmHOX2a(2)              <---------ANAC55(2)<xxxxxxxxxxxxxxxxsmallRNA(i)  <------ZmHOX2a(2)               <---------bZIP60(1)<---------MYB55(2)  <---------At4g35610            xxxxxxxxxxxxxxxx>smallRNA(s)<------ZmHOX2a(2)  --------->At4g35610          ----------->TGA1<---------ALFIN1       <---------HSFB2a(2) <---------ARR14(3)       --------->MYB52(1)----------------------->TaNAC69(2) --------->ARR14(3)   ------>ZmHOX2a(2) <---------SPL7      --------->ARR11(3) --------->ARR14(2)  <------ZmHOX2a(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------TOE2(3) --------->ARR11(3) <---------ARR14(2) <---------ANAC55(2)  --------->ARR14(2)    <-------TEIL <---------AGP1     --------->ARR14(2) <---------ANAC46--------->MYB52(1)        <--------P --------- <---------ARR14(2)--------->At4g35610 --------->ANAC55(2)  <---------ARR14(2)<---------TOE2(2)------ <---------ARR11(3)<---------At4g35610 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-----------RAV1(2)    - ------LBD16   <-----------HVH21<---------TGA2(2)<---------At4g35610----------->RAV1(2)     ---------   cgggatctggcttaccagttcagatcccaaacgatgacgttacggacgggcacctcccaacggatctccctcctggagcccaggttgatgttatccataa  1944500                                          ----------->HVH21                                         ------>ZmHOX2a(2)                                        <---------At4g35610                                        --------->At4g35610                                       <---------AGP1             --------->ANAC58                                       <---------ARR11(3)      --------->LBD16              ---------      --------->LBD16                  --------->ARR14(2)     --------->ANAC46              ---------    <---------LBD16                    <---------ARR14(2)     --------->ANAC58    --------->ANAC58 >TOE1(3)                           <---------HSFB2a(2)       --------->ANAC58    --------->ANAC58 --->MYB52(1)<---------ARR11(3)     --------->HSFB2a(2)      <---------LBD16 <------NtERF2  --------- ---------->HVH21    xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------ALFIN1<---------ANAC46 <-------- >TOE2(3)    --------->ARR11(3)    <---------LBD16 <-----------GT1--------->ANAC58--------->ANAC46  -   cagtgacccggagaacatctcccaaaactcgaattcttctggatctgacaaaatcactccccctccgcaaacaaggggcggaaaacgaaacatcacgata  1944600                                                                                      <--------HAHB4                                                                                      <---------ICU4                                                                                    <---------ARR11(3)                                                                                    --------->ARR11(3)                                                                                   --------->YAB1                                                                                  <---------ATHB12                                                                             --------->ANAC58                                                      ------>MYB46(1)        --------->ANAC46                                                   <---------ZAT2            --------->ANAC58                                                  ------>NtERF2             <---------LBD16                                                 ------>NtERF2              ------>NtERF2                                                ----------->HVH21           --------->LBD16                                               --------->LBD16            ---------->CDC5                                               <------NtERF2              <---------LBD16                                              <---------ATERF1(1)      <---------At4g35610                                              --------->ANAC58         <---------GLK1(1)                                              --------->ANAC58         --------->GLK1(1) ------->GAMYB           ------>MYB83         --------->ANAC46         --------->ZAT2<---------YAB1 >ANAC46                 -------->P          --------->DEAR3(1)        --------->At4g35610 >ANAC58             ------>NtERF2           <---------LBD16           <---------ZAT2--------->ICU4 >ANAC58            --------->LBD16    <---------GLK1(2)   <---------ATHB12<---------ANAC46 -YAB1--------->MYB52(1) ------>MYB46(1) <-------TEIL ------>MYB83    ----------->ARR10--------->TOE2(3) -------->MYB46(3)<---------LBD16  <---------ATHB12--------->ZAT2    <------NtERF2--------->ICU4 <<<<   caacctccaaacggagataacccggccaacctgtctaatcaggttcgcccgcgacctgccaatgaattggccgagctccgcgcaatgatcattaacttga  1944700                                                   <---------PCF2                                                   <-----------HVH21                                              ===================RAV                                              <-----------RAV1(1)                                         --------->LBD16                                         <------NtERF2                              ------->MYC3                                         ------>NtERF2 --------->At4g35610          <-------MYC3                                        --------->RRTF1(3)                        xxxxxxxxxxxxxxxxxxx                                        --------->ANAC46<------ZmHOX2a(1)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                        --------->DEAR3(1)                  <---------AtLEC2                                     --------->ANAC46<-----------RAV1(2)  --------->ANAC58                        <---------ANAC46--------->RAP2.6(2)        --------->ARR14(2)      ----------                        <---------ANAC58--------->RAP2.3(2)   --------->ANAC58    xxxxxxxxxxxxxxxxxxx                        <---------ANAC58--------->RRTF1(2)    --------->ANAC58--------->ANAC58                       <---------LBD16 --------->RAP2.3(1)  --------->CCA1(2) --------->ANAC58  -----                --------->ANAC58     <---------DEAR3(1)<---------At4g35610--------->ANAC58--------->ALFIN1 <<<<<<WRKY26   --------->ANAC58    <xxxxxxxxxxxxxxxxsmallRNA(i)   <---------ARR14(2)   <---------ANAC46   tcaacttaaccaaaaaccaagaaattgcgcattgcaacctcgccgcaattgtgggtcaggagagacgcgattccactcgcatggcacatgaggtagagcg  1944800                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                             ------>ZmHOX2a(2)                                                             ====================================HOX2a_HOX2a                                                            =====================================HOX2a_HOX2a                                                            --------->CCA1(2)                                                            <------ZmHOX2a(2)                                                            <---------At4g35610                                --------->TOE1(2)          --------->AGP1                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              --------->ARR14(2)           <---------ARR14(2)          <------ZmHOX2a(2)                           --------->ANAC58      --------->ARR14(2)   xxxxxxxxxxxxxxxx>smallRNA(i)                           --------->ANAC46      <---------ARR14(2)   <---------At5g28300                           --------->ANAC58     <---------ZAT2    <---------------AtSPL3        -----                          --------->LBD16     <-----------RAV1(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          ------>NtERF2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------ARR14(2)                <---------HSFC1(2)    --------->GLK1(1)    <---------AGP1             --------->ARR14(2)         <--------P      --------->LBD16   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>NtERF2  <----      --------->LBD16    --------->ANAC46 ------>ZmHOX2a(1)--------->ARR14(2)   --------->MYB46(3)     <---------ANAC46   xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------>ZmHOX2a(1)    <---------LBD16     <---------LBD16   ==========================HOX2a_HOX2a --------->DEAR3(1) >smallRNA(si3) --------->HSFC1(2)   <---------GLK1(1)     --------->ARR11(3)   ----------->HVH21 >DOF2<---------TOE1(2)<---------ALFIN1   =========================HOX2a_HOX2a --------->LBD16  ----- xx>smallRNA(le3)     --------->ANAC46<---------GLK1(1)    <---------ARR11(3) <xxxxxxxxxxxxxxxxsmallRNA(s) ---->ZAT18  <------ZmHOX2a(1)<---------ARR14(2)--------->ZAT2----------->HVH21--------->HSFB2a(2)   cgatatcgcgggtaaggaggtttccccccgcgaaactgggattcctgcccaggtccccatagatctgacaggtaccgtctccccgaccgatcctactccg  1944900  Previous    Next  AGI:  At4g04050.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 2.2e-207 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays) Range:  from: 1944376    to: 1950429    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version