Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            -----------                                                                               --------->AtLEC2                                                                   --------->ANAC46     <---------ANAC46                                                       -------->HAHB4        xxxxxxxxxxxxxxxx>smallRNA(le3)                                                       --------->ATHB12     <---------MYB52(1)   <---                                                      <---------YAB1        --------->ARR14(2)  <----    <----------DOF2                                   --------->ICU4xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -------->DOF2                                      --------->YAB1 --------->ANAC58     <---------ANAC58 ----DOF2                        --------->ZAT6     <---------ICU4 --------->ANAC58     <---------ANAC58   taaaagcttttaaaatcccttgtaaattatctataacacttacttatgttttaaaaatgattgtaaactacgcaaacagttatgcaaatgccttgtaaat  1930000                 <---------TOE1(3)           --------->AHL20(2)          <---------MYB52(1)         --------->At5g28300         <-------GAMYB        ----------->GT1                                                                       <------    ----------->HVH21                                                                 <------MYB46(1)    --------->ANAC46<----------DOF2            <---------ANAC55(2)                    <------MYB83 -- >GT1----------->RAV1(1)                     <-----------GT1                       <---------ARR14(2) ------ICU4<---------AHL20(2)   ----------->GT1--------->ANAC55(2)                 --------->ARR14(2) -----ATHB12     <---------TOE2(3)      <----------DOF2    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)-------   cattctacgacagttaattaagctttaaaaacgattgtaaaactttattacctgttgtgagatagaactctctcaaggagaaacagataggttgagaatc  1930100                                                                       --------->GLK1(2)                                      --------->ZAT2                   --------->ARR14(2)                                      --------->At4g35610              --------->ARR11(3)                                      <---------ZAT2<---------ZAT6     <---------ARR11(3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ARR14(2)                                xxxxxxxxxxxxxxxx>smallRNA(s)      --------->LBD16                              <-----------GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        --------->HSFB2a(2)                     ------>ZmHOX2a(1)<---------At4g35610        <---------HSFB2a(2)                     <----------DOF2 <-----------RAV1(1)  <---------GLK1(2)                     <xxxx        ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------LBD16                <xxxxx -----ARR10         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->ARR11(3)         xxxxxxxxxxxxxxxx ------->ZAT6       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ARR11(3)         xxxxxxxxxxxxxxxx -->GLK1(2)        ------>ZmHOX2a(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------YAB1   xxxxxxxxxx   aactctaaaccaaagagttgatccttttgttttcactctctgctgcatgagatagtgaaagattttcccagaaaatctgattcccttcttagccttcatt  1930200                             <---------MYB52(2)                              <---------DAG2 xxxxxxxxxxxxsmallRNA(i)--------->ANAC58                                     <----------DOF2 xxxxxxxxxxxxxxxxxsmallRNA(si3) ------->TEIL                            ------>ZmHOX2a(1) xxxxxx>smallRNA(s2)    --------->ANAC58                    <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxx>smallRNA(i2)   --------->ANAC46   --------->At4g35610 ---------->DOF2 xxxxxxxxxxxxx>smallRNA(l2)--------->MYB52(1)--------->HSFB2a(2)      <xxxxxxxxxxxxxxxxsmallRNA(fl3)   tttggtcccaattcaactagaagaccaagaaacgaacttctaatcttctgaaataaacactcgcctaaagcttcctctactttactaactaaattccaat  1930300                                                    ------>ZmHOX2a(2)                                                   <------ZmHOX2a(2)                                                   ==========================HOX2a_HOX2a                                                  <---------ARR14(2)                                                  <---------ARR11(3)                                                  --------->ARR11(3)                                    <---------ALFIN1=========================HOX2a_HOX2a                                   =======================HOX2a_HOX2a                              <---------GLK1(2)   --------->ARR14(2)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       --------->ZAT14            --------->AGP1                       <---------ZAT18            <---------AGP1        <---------GLK1(1)                       --------->ZAT18 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       <---------ZAT14 <---------DAG2          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->ANAC46                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ANAC58                   *TSS                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ANAC58<-----------GT1   xxxxxxxx               --------->ARR14(2)  ========================HOX2a_HOX2a  --------->GLK1(1) --------->At4g35610               <---------ARR14(2)  ------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxx            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------CCA1(2)    <------ZmHOX2a(1)   <---------At4g35610    <---------YAB1xxxxxxxxxxxxxxxx>smallRNA(s)  ----------->ARR10    --------->ICU4    <xxxxxxxxxxxxx   ccaagtattgttgaacggttcccagtgcaatagattcctcaccttctctgtagatctgttcaggcaatgtaaggatttcactctctgaatccatctgcaa  1930400                                                                                 --------->ARR11(3)                                                                                 <---------ARR11(3)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                <---------GLK1(1)                                                                         ------>ZmHOX2a(2)                                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                        <------ZmHOX2a(2)                                                                       --------->ARR14(2)                                                                       <---------ARR14(2)                                                                       <-----------ARR10                                                                       <---------AGP1                                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      <---------CCA1(2)                                                                     <---------DEAR3(2)            <-                      ------>ZmHOX2a(2)                             <xxxxxxxxxxxxxxxxsmallRNA(i)   <-                     <------ZmHOX2a(2)                         <---------At5g28300                 <-                    <---------ARR14(2)                         <---------DOF5.7(2)xxxxxxxxxxxxxxxx>smallRNA(s)                    --------->ARR14(2)                   xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxx                    --------->AGP1                       xxxxxxxxxxxxxxxx>smallRNA(i)  --------->LBD16                    <---------AGP1                      xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx                    <---------ARR11(3)                  --------->MYB52(1)      <xxxxxxxxxxxxxxxxsmallRNA(s)                   <---------CCA1(2)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------                   --------->At4g35610               --------->YAB1xxxxxxxxxxxxxxxx>smallRNA(s)<-----               <-----------TGA1           <---------AHL20(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxx               <-----------HVH21         --------->AHL20(2)  xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxx      <---------YAB1--------->ARR11(3)  ----------->TBP ------------>MYB.PH3(1)xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxx>smallRNA(se3)<---------AHL20(2)    ----------->TBP<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(fl3)  --------->AHL20(2)     <---------YAB1<-----------HVH21  <---------LBD16 xxxxxxxxxxsmallRNA(se3)    ----------->TBP       --------->YAB1 <xxxxxxxxxxxxxxxxsmallRNA(s)  <-----   aacatgttatgaaacatcgtcagatctactataaaatcgactataaaatcgattataaaaacggttaccgtcggatctatcgatatctctggggattgtt  1930500                            <---------At4g35610    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ANAC46          <------NtERF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                            <--- xx>smallRNA(i2)            --------->At4g35610                                                 <---- --------ANAC46          <---------MYB52(1)                    <---------At4g35610              <---- --------ANAC58         <-----------HVH21                      <------NtERF2                    <---- --------ANAC58        --------->ANAC46                      <---------WRKY12                   <---- xxx>smallRNA(s)    --------->ARR14(2)                     <-----------TGA1                     <---- >smallRNA(i)       <---------ARR14(2)                     <-----------HVH21                    ----- ---CBF         ------>ZmHOX2a(2)                        <-------TEIL                          <----- ----ANAC58   <---------ARR11(3)                      <---------GLK1(1)                      <------- xxxxxxxxxxxxsmallRNA(se3)<---------WRKY12          <------ZmHOX2a(1)          <---------HSFB2a(2)<-- xxxxxxxxxx>smallRNA(s2)<-----------TGA1           ----------->GT1 <----------DOF2   ----------->GT1 x>smallRNA(i2)--------->At4g35610             xxxxxxxxxxxxxxxx>smallRNA(i)    --------->HSFB2a(2)xxx ----ANAC58   --------->ARR11(3)            XXXXXXXXXXXXXXXXXXXXX>MIR2933A/B   <---------LBD16<------   tgcgtcgtagagaaatgatctgaatccgtcagcgaagaacagatttatcggagaggaaattcgtcagcgattttggggtttctcggagagaaaatttgtc  1930600                                                                                                    <        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                -       <---------ANAC46                                                                           xxx     <---------YAB1              <------NtERF2                                                 ------ xxxxxxxxxxxxxxxx>smallRNA(s)  <---------DEAR3(1)                                              <----- ------RAP2.3(1)              <---------MYB52(1)                                              xxxxxxx -----DEAR3(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <------NtERF2             xxxxxxx -----RAP2.3(3)          <xxxxxxxxxxxxxxxxsmallRNA(s)    <------ZmHOX2a(1)                    <------ -----DREB2C(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     ------>NtERF2            xxxxxxxxx -----DEAR4(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-------TEIL    <xxxxxxxxxxxxxxxxsmallRNA(i) -----At1g77200         <---------GLK1(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------YAB1   <------ZmHOX2a(1) ---->ETT(1)           <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i)            xxxxxxxxx ----ORA47(1)         <------ZmHOX2a(1)   <---------ANAC46 <---------GLK1(1) <---------ANAC46-------- ----RAV1(1)         ----------->GT1xxxxxxxxxxxxxxxx>smallRNA(s)  <---------DEAR3(1)       ---------- ----NtERF2      xxxxxxxxxxxxxxxx>smallRNA(i)    XXXXXXXXXXXXXXXXXXXXX>MIR2933A/B        <xxxxxxxxxxx xxxxxxxxxxxxx>smallRNA(i) <-------TEIL <---------YAB1  ----------->GT1 --------->ICU4 xxxxxxxxxxxxxx -----HVH21 XXXXXXXXXXXXXXXXXXXXX>MIR2933A/B    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)XXXXXXXXXXXXXXXXX   ggcgattttgagtgaaatcggagaggaaattcgttggcgattttgagtgaaatcggagaggaaattcgtcggcaattttgagtgaaatcggagaggaaat  1930700   <------NtERF2  <---------ATERF1(1)  ------>NtERF2  --------->LBD16 <---------DEAR3(1) --------->DEAR3(1) --------->ATERF1(2) <---------ATERF1(2) ---------LBD16               --------->HSFB2a(1) -------->ATERF1(1)           <---------HSFC1(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   --------->WRKY38(1) --->ARR14(2)                 <---------HSFB2a(1) ----ARR14(2)              <------ZmHOX2a(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             < xxxxxxxxxxxxxxxx>smallRNA(se3)      --------->WRKY12xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <- xxxxxxxxxxxxxxxx>smallRNA(si3)  <-------TEIL <----------ID1                                       <- ---GLK1(1) <---------ANAC46  --------->HSFC1(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            ---- xxxxxxx>smallRNA(s)      ----------->GT1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              ---- xxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i)                                        xxxx --->ARR10<---------YAB1 ----------->GT1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <----- ->GT1xxxxxxxxxxxxxxxx>smallRNA(s)  <---------MYB52(1)                                  <xxxxxxxxxxxx xxxxxsmallRNA(s)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                ----------->GT1    ------ xx>smallRNA(i)        <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <xxxxxxxxxxxx XXXX>MIR2933A/B       --------->ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        ------->TEIL --   tcgccggcgattttgagtgaaatcggataggaaaattcgttggccaaaacgaagaagtttgtgccaaaacgaattgtattgtgaaacgaatgtgaaacct  1930800                                                                                                xxxxx                                                                                                xxxxx                                                                                                xxxxx                                                                                               <xxxxx                                                                                              <xxxxxx --------->WOX13(1)         ----------------->AGL1                                            <xxxxxx ---------ICU4     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                    <xxxxxxxx --------YAB1  --------->ANAC58               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ----------->GT1 --------ATHB12--------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               --------->DAG2  < -->MYB46(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 xxxxxxxxxxxxxxxxxx -->MYB83xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ZAT6                   xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ---------->DOF2              ---------->DOF2  xxxxxxxxxxxxxxxxxx ----MYB59<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <------ZmHOX2a(1)---------->DOF2---- xxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxx --->TOE2(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->YAB1 xxxxxxxxxxxsmallRNA(fl3)   ----------------->AG<xxxxxxxxxxxxxxxxsmallRNA(i)  <-----------GT1<xxxxxxx ------->ICU4xxxxxxxxxxxxxxxx>smallRNA(i)  <--------P<---------ICU4   <------ZmHOX2a(1)   <---------YAB1   aatcattcagtaagggtaagacagtcatttgccatattagaaagggtagttttaaaaatggccttcaggaaaggacatttttacaaaaggttattagaat  1930900  Previous    Next  AGI:  At4g04010.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G44500.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) Range:  from: 1925650    to: 1930394    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version