Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           <-------TEIL                                                ------>ZmHOX2a(2)                                               --------->CCA1(2)            --------->ANAC46                               <---------HSFB2a(2)   <---------AHL20(2)     <---------ALFIN1                               --------->HSFB2a(2)   --------->AHL20(2) <<<<<<<<<GATA-1                          <---------DAG2       <------ZmHOX2a(2)        <<<<<<<<<GATA-4                          <----------DOF2     <---------ARR14(2)        <<<<<<<<<GATA-3                  --------->HSFB2a(2)         <---------AGP1            <<<<<<<<<GATA-2     <--------                  <---------HSFB2a(2)         --------->AGP1          --------->WOX13(1)  <xxxxxxxxxx              <---------AHL20(2)              --------->ARR11(3)   <-----------HVH21      <---------At4g35610         <------NtERF2 --------->ANAC58       <---------ARR11(3)<---------ANAC58      <-----------GT1  ------>ZmHOX2a(1)    --------->ANAC58       --------->ARR14(2)<---------ANAC58  <----------DOF2   tctcctctggctgcatttttttggaacgcttttccaaaacatatgcaagatctaaaaaattcatttccttgtcaatccacacatcttttttctgctttcc  1917400                            <----------DOF2                         <---------ALFIN1                      --------->ANAC46               <----------DOF2               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------ARR11(3)            --------->ARR11(3)   <----------DOF2                              --------->ATHB12         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    ------>ZmHOX2a(1) ---------->DOF2   <-----------GT1                              ----------->RAV1(2)                -- --DOF2<---------YAB1--------->MYB46(3) <----------DOF2     --------->At4g35610                   <-- xxxxxxxxxxxxsmallRNA(si3)  <---------DAG2                  <---------At4g35610           ------>ZmHOX2a(1)   cttcaaagtctgattatcttttatccaccacttttctttcttctttctcttcacatttggactgcttcctgatgcatcatccattggaagtcctgttgtt  1917500                                                                   <--------P                                                                  <-------GAMYB                                                                 --------->MYB55(2)                                                                 <------MYB83                                                            <---------YAB1                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <-------                              <-------TEIL              <-----------TGA1                   --------->YAB1                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <------MYB46(1)          --------->ICU4 ------->YAB1      --------->GLK1(2)            --------->TOE2(3)<---------MYB46(3)   xxxxxxxxxxxxxxx -------YAB1      <---------GLK1(2)          --------->ANAC46<-----------RAV1(1)<---------LBD16     -   atgataaactctctcagggagaatcgcataggttgatcagcaaatacaaaccacaattcgtcattgttggttagtattcttctctggagtaaatgatgaa  1917600                                             <------ZmHOX2a(1)     <---------ANAC46                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    --     <---------ANAC58               ----------------->AGL1                                         --     <---------ANAC58               <-----------------AGL1                  --------->ZAT6    <------ --YAB1                          <---------ARR14(2)                  --------->ALFIN1    ---------->DOF2 xxxxxxxx>smallRNA(fl3)      <---------At4g35610                  <---------TOE2(3)   <----------DOF2 -------->CCA1(2)    <-------TEIL--------->GLK1(1)    --------->GLK1(2)   <xxxxxxxxxxxxxxxxsmallRNA(i)   cgatatggcttgaaaatgctaagtccatttcagcgaattccactataggacccaagaatgtgtccattaatgtgttgaactctatcggctctaaagcttt  1917700                                                                       <------MYB83                                                                       <------MYB46(1)                                                                     <--------P                                                                <---------ANAC46                                                               ------>NtERF2                               <----------DOF2              --------->At4g35610 <<<<<<<GRF7               ------->TEIL                     <---------At4g35610 --------->HVH21        <---------YAB1               xxxxxxxxxxxxxxxx>smallRNA(i) ---->ZmHOX2a(1)      <------ZmHOX2a(1)            <-----------GT1 <xxxxxxxxxxxxxxxxsmallRNA(i) ----DOF2           <---------TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <----------DOF2   cctgacagtcgagacaattttgaaggatgaatgctttgatacccttgtaatattatctacttcgctgcctggttggaacagtcttttagggaagaacagt  1917800                                                        <---------TOE2(3)                                                  <---------AHL20(2)                                                  --------->AHL20(2)                                   --------->TOE2(3)    <---------YAB1              *TSS               <-------TEIL     --------->AHL20(1)            <-----------GT1        --------->YAB1      <---------AHL20(2)    <---------AHL20(1)        ----------->TBP --------------->AtSPL8     --------->AHL20(2)   --------->AHL20(2)    ----------->GT1   ttttttgtactcatatttctcaaaacctgattaaatacattaacacagtcattaaattaacatagttttgaaatggttttaaaaaccatttttgtaaatc  1917900                                                        --------->TOE2(3)                                                        <----------DOF2                                                     --------->ARR11(3)                                                     <---------ARR11(3)          ---------->ID1          <---------ICU4 ---------->DOF2                                -----      <-----------TBP       --------->YAB1  ----------->GT1                         ---------->DOF2     ------->TEIL     --------->YAB1     --------->ANAC46                <-----------GT1 <---------ICU4   tattatgcatttgtagttttcgaaacataaacatagtcattacaagtcgtttaaagaactttaaaaacccttgtaaaaccatttttcaaagtcattacaa  1918000                                                                                                  ---                                                        ---------->DOF2                           <--                <-----------GT1    --------->YAB1  ------>ZmHOX2a(1)                         <-------          <----------DOF2          <---------ICU4  <----------DOF2                         <---------AHL20(2) ---->ANAC46 --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------MYB52(1)         --------->AHL20(2)   gtcgttttaagactttaataacccttgtaaaacacagtcattactccataatcctttttaaagaccgttttgaaacaattccaaaaacaaaattttaatc  1918100                                                                                         <------ZmHOX2a(2)                                                                                        --------->GLK1(2)                                                           <---------ATHB12             <---------AGP1                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          --------->ANAC46              --------->ARR11(3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)     ---                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------>ZmHOX2a(2)                 <xxxxxxxxxxxxxxxxsmallRNA(s)       -------->P                          <---------ARR11(3)                <---------At4g35610                 ------>MYB46(1)                     <---------ARR14(2)                --------->At4g35610                 ------>MYB83                        --------->ARR14(2)   ---------->DOF2       ----------->GT1         --------->MYB46(3)                    <------ZmHOX2a(1) --->ZmHOX2a(1)--------->DEAR3(1)       <----------DOF2  --------->WOX13(1)      <---------ANAC55(2) --------DOF2<---------At4g35610        <---------DAG2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     XXXXX ----GT1    --------->DEAR3(1)     <-----------GT1--------->AtMYB61        --------->AHL20(2) -------   cttttcaaagaacacagccgctgaaaatagaaacaaaaaacccttttccaaaccaactccaatcaactggtaacccataaattaagtgaggatctataaa  1918200                                   <---------TOE2(3)                            <---------At5g28300                   --------->WOX13(1)                                          <xxxxxxxxxxxxxxxxsmallRNA(s)               --------->YAB1      <---------TOE1(3)                         ----------->GT1 ------>AHL20(2)--------->TOE2(3) ---------->DOF2                       ------->GAMYB          <----- XXXXXXXXXXXXXXX>MIR403    <-----------GT1    <----------ID1         ----------->RAV1(1)       ------ -->AHL20(2)  <---------ATHB12<---------ZAT6  ----------->GT1       --------->REM1(1) <xxxxxxxxxxxxxx   ttaaaacacaaacccaaacatcaatctatttactgttaaagtttcaaaacgaaaaaactttgaaattgctacaacagagaagttaatcggcattcgaaat  1918300  Previous    Next  AGI:  At4g03990.1    Description:  transposable element gene. similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G04970.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G14140.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains domain HIPIP (high potential iron protein) (SSF57652) Range:  from: 1916459    to: 1917814    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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