Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     --------->LBD16                                                                  <---------ANAC58                                                                  <---------ANAC58                                                                  <---------ANAC46                                                                ------>MYB46(1)       --------->REM1(1)                                        ------>MYB83   ------>MYB83                                                 -------->P   ------>MYB46(1)                                              --------->MYB52(1) <---------MYB111(1)                                           --------->MYB55(1) --MYB83                                                      --------->AtMYB61 --MYB46(1)                                             --------->ANAC58    <---------YAB1 ----------AtSPL8                             --------->ANAC58<---------MYB111(1) --->MYB111(1)                                --------->ANAC58<---------MYB59 --------->AtSPL8           --------->At4g35610         --------->ANAC58  --------->YAB1      <------   gtaccaactacatctcatttcagattaatgagcttaactacagaagggaaggaatcggaagaaacctaccgtggtatcaaaattgaaatttgtcaacttt  1874300                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                    --------->ARR14(3)                    --------->ARR14(2)                    <---------ARR14(2)                                     --------->CCA1(2)                    <---------ARR14(3)                                    --------->ARR14(2)                    <---------ARR11(3)                                  ----------->ARR10                    --------->ARR11(3)                               --------->TOE1(2)                    <-----------ARR10                                --------->TOE2(2)            <--                    <---------AGP1            --------->CCA1(2)     ----------->RAV1(2)           ---                  ----------->ARR10          <----------ID1       <<<<<<<<<GT-1         --------->ATHB12 ----DOF2       <---------At4g35610<---------ZAT6                 <-----------GT1   <------ZmHOX2a(1)   caaaaattttgaattctcagaagatcttaatctcttagtgtgaagaagagacaagagagagattagatttacctgagatttgcagaggaatcaatggtcg  1874400                                                                                     --------->YAB1                                                                                     <---------ICU4                                                                                    --------->ICU4                                                                                  --------->YAB1               --------->ALFIN1                                          --------->ARR14(2)        ---------->DOF2                                                  <---------ARR14(2)      <------NtERF2                                                      <---------GLK1(2)     --------->LBD16        <---------ATHB12                             <---------ARR11(3)    --------->LBD16  --------->ZAT18                                     --------->ARR11(3)   <---------LBD16 --------->ZAT2                                      ----------->ARR10 -------ARR14(2)   <---------At4g35610                             <---------At4g35610 ------>ARR14(2)   --------->At4g35610                           <---------HSFB2a(2)<---------ATHB12   aattcgccggaaaagaggtggagctcaccaatggagactgaaattgaatttgaagtgtctcaaaatttcagaagagatactctctaatcatcacaacaac  1874500                                             <---------RAP2.6(2)                                             <---------ANAC58                      <---------WOX13(1)                                             <---------ANAC58                   <---------AHL20(2)                                             <---------ANAC46              --------->LBD16                                            --------->ATERF1(1)          <---------LBD16                                            <------NtERF2               <---------ZAT2                                           <---------ERF1               --------->ZAT2                                          --------->ALFIN1              --------->At4g35610                                          <---------DEAR3(1)            ------>NtERF2                                        <---------MYB46(3)             --------->DEAR3(1)                                       <---------AtMYB61            --------->ANAC46                                    --------->ALFIN1                --------->ANAC58                                    ----------->HVH21               --------->ANAC58                                 <---------DEAR3(1)         <------NtERF2--------->ATERF1(1)  <------                                <---------At4g35610       <---------DEAR3(1)<------NtERF2    --------   gagaaaatgagagattggagagtaccatgagttgagcggtgatggtggcggtctgattcgtcggagttaaacgcagccggagttaattgatggtgaagat  1874600                                                                                                <----                                                                                        ---------->DOF2                                                                                      --------->MYB46(3)                                                                                     *TSS --------->DAG2                                                                                     ------>MYB83                                                                                     ------>MYB46(1)                    <---------ANAC55(2)                                             ----------->RAV1(1)                    --------->ANAC58                                               ------->GAMYB<----                    --------->ANAC58                                               --------->AtMYB61                   <---------LBD16                                                --------->MYB46(3)                 ----------->HVH21                                                <---------MYB52(2)                <-----------HVH21                                                 <---------MYB55(2)             <---------bZIP60(2)          --------->CCA1(2)                      --------->ANAC58 ---At4g35610<---------ANAC46  <---------ANAC46                                  -------->P  -------- ->ICU4    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <-----------GT1  --------->ANAC58   gactgtgatgttgtgatgtgtcacggacgagaggcctggatgagagacgaagagaagtctcttgtttcaccagaacgaagagcaaccaacaaaaggtgaa  1874700                       <---------GLK1(2)                       --------->ARR14(2)            --------->ARR14(2)            <---------ARR14(2)          --------->LBD16         <---------ANAC46               ---------->DOF2         <---------ANAC58          <---------------AGL15        <---------LBD16<---------ARR14(2)                   <---------ANAC58     <-------GAMYB  <---------TOE2(3)<-----------TBP   <---------ZAT2     --------->At4g35610--------->GLK1(1)              --------->ZAT2     <---------At4g35610<---------GLK1(1)      >>>>>>>>>TBF1<---------ANAC46 -----TOE2(3)  <------MYB46(1)     --------------->AGL15    <---------ANAC58 -----TOE1(3)  <------MYB83        <----------DOF2>>>>>>>>>TBF1                     <----------ID1 ->ALFIN1<---------ANAC58         --------->TOE2(3)   --------->GLK1(2)    <---------ANAC46   ggtttgcagttgcggataggttatggattcccattacctttataaagaagaagaagaagctggtgtgagactaagtgtcgaagaatgagacaagggagaa  1874800                                                                                      <---------TOE2(3)                                                                                      <---------TOE1(3)                                                                                   <---------YAB1                                                      <---------MYB46(3)         --------->ATHB51                                                     <---------ANAC46            --------->ATHB12                                        <---------ANAC46                         <---------ICU4                                --------->YAB1     --------->ALFIN1              <--------HAHB4                                --------->TOE2(3)<---------ANAC58               --------->ICU4                        <---------At4g35610      <---------ANAC58              <----------DOF2                  <-----------ARR10     <---------ANAC58                     --------->LBD16   <---------YAB1 <---------ARR11(3)    <---------ANAC58                   <---------LBD16   <-------   agactcttattgtaagagagggtcttagctactatcttagtgtcgttttaggcttgtgggtgtatttaagcactgcttccgcattattagggtttttatc  1874900                                                                --------->ZAT18                                                                <-------TEIL          <---------ATHB12            <---------CCA1(2)   ---------->DOF2      <------ZmHOX2a(2)             <---------CCA1(2)  --------->TOE2(3)     <---------ARR11(3)      --------->RVE1(1)         --------->TOE1(3)     --------->ARR11(3)     <---------ARR11(3)    <---------HSFB2a(2)                            <--- ----GT1--------->WOX13(1)  --------->ARR11(3)    --------->HSFB2a(2)                   <----------DOF2   ttatgaagatcaatcaaacaaactttctaaaatctctcttatctctcttcttctcgaccttaaaggtgcaatacttctctccctccatttctttctgttc  1875000                                   <--------P                                <---------AtMYB61                               <------NtERF2                              --------->LBD16                       <----------DOF2                      <---------ANAC58                  --------->At4g35610                      <---------ANAC58                  <---------At4g35610                   <---------MYB52(1)                  --------->GLK1(2)              <---------ZAT2                  --------->At4g35610                  --------->ARR14(2)            --------->ANAC58           <---------ANAC58  --------->DEAR3(1)        <---------ARR14(2)            --------->ANAC58           <---------ANAC58 <---------LBD16           <---------GLK1(2)       ---------->DOF2 -------DOF2      <---------At4g35610      ---------->DOF2              <---------YAB1--------->At4g35610   ttttcatatcagggcttatcagttgctttcgccggaggtagccatcaaagtagtcggaatctgagtttgattttgtcattgaaaggcaagctccatcttc  1875100                                                   ----------->GT1                                                  <---------LBD16                                                 <---------bZIP60(2)            <-------GAMYB                                                 <---------ANAC46              <---------MYB46(3)                                               --------->MYB52(1)              --------->MYB55(2)                            ---------->DOF2   ----------->HVH21            <---------AtMYB61                       --------->ALFIN1       <---------SPL7<-------TEIL  <------NtERF2             <                 --------->ZAT2               ----------->TGA1           --------->LBD16          <--                 <---------ZAT2    <------ZmHOX2a(1)----------->GT1     --------->DEAR3(1)        ---     <---------HSFB2a(2) <------NtERF2      --------->At4g35610        <---------LBD16         <-----     --------->HSFB2a(2)<---------MYB46(3)  <---------At4g35610 <---------TOE2(2)              ------    <---------ETT(2)<---------DEAR3(1)     <---------MYB46(3)   <---------TOE1(2)      --------->ALFIN1   tccatgtcgagaacaagagagctcggtggggaaaggaggagacgatggctgacggggaaaaattcgtatgttcgccggaggtcgttggagtctggcagtg  1875200  Previous    Next  AGI:  At4g03935.1    Description:  other RNA Range:  from: 1869050    to: 1874685    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g03940.1    Description:  unknown protein Range:  from: 1873622    to: 1875231    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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