Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            --------->ANAC58                                                                          --------->ANAC55(2)                                                                          --------->ANAC46                                                                          <---------ANAC55(2)     <xx                                                   <--------ATHB1         --------->ANAC55(1)    <---                                                   <---------ICU4         --------->ANAC58       <---                                                   --------->ATHB51       <---------TGA1a        ----                  <---------ANAC55(1)              --------->YAB1         --------->TGA1a        ----             --------->ATHB12                     --------->ICU4          --------->O2           ----             <---------AHL20(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <---            --------->AHL20(2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxx -------STY1(1)   <---------ANAC46  --------->HSFB2a(2)   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxx ------>STY1(1)   <------MYB83 <----------DOF2    <---------ATHB51   ------>ZmHOX2a(1)<---------TOE2(3) ----->TOE1(2)    <------MYB46(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------O2<---------TOE1(3) ----->TOE2(2)   --------->MYB111(1)<---------HSFB2a(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)------   ctaggggttttctatttattaggtgtatattgtcttttctagtactaaaacaataatggctaagtctcatcctcacacgtaagagattaaggttgagaat  1870000                         <xxxxxxxxxxxxxxxxsmallRNA(i)                     --------------->AGL15                     <---------------AGL15                     <---------MYB59 xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          --------->ZAT18 ------AHL20(1)      --------->TOE1(3)                                       <---------ZAT14 ------AHL20(2)      --------->TOE2(3)                   <---------AHL20(2)  --------->ZAT14 ----->ARR11(3)     ----------------->AG            <-------TEIL   <---------------AGL15 ----->AHL20(2)     ================================================================MADS_MADS ----->AHL20(1)     ----------------->AGL3       ------>MYB46(1)   --------------->AGL15 ------ARR11(3)     <-----------------AGL3       ------>MYB83     ----------------->AGL1 >smallRNA(si3)     ===============================================================MADS_MADS xxxxxxxxxxxxxxxx>smallRNA(si3)                <---------MYB59    ----------------->AGL3 --->GLK1(2)   --------->YAB1               <-----------GT1     <-----------GT1                     <   atattgtattgttgttagcataacctaaaatggatgaaaccaatttctaccaaattcatttttttttagccatttagagtacagtggaaaacaagtattt  1870100                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                <----------DOF2              <xxxxxxx                                                        <---------ALFIN1                     ------>MYB83                                          ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---                                        <---------At4g35610<----------DOF2                   ------>MYB46(1)                                        --------->At4g35610<---------DAG2         xxxxxxxxxxxxxxxxxxx       --------->ZAT18          <----------DOF2         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxx  ---------->DOF2           <---------CCA1(2)     --------------->AtSPL8  <----------DOF2  <---------MYB59 ---------MYB52(2)     <<<<<<<<<TBF1    --------->ZAT2 xxxxxxxxxxxxxxxx>smallRNA(i)--------->YAB1----   caactaaagtactctaagacaattcttcttctatcttttatgagctgaaaattttggaccacttttcttttctgttctttgtggataataaaaccaaact  1870200                                                                                  <------------CBF                                                                                 <---------AHL20(2)                                                                                 --------->ATHB12                                                                                --------->AHL20(2) <-                         --------->ZAT14      ------>ZmHOX2a(2)                 <---------AHL20(2)<--      --------->YAB1     <---------ZAT14      ============================HOX2a_HOX2a             --- xxxxxxxxxxxxxxxxsmallRNA(si3)              <---------ARR11(3)              <---------YAB1    ------- ------ZAT14          <------------CBF   <---------WOX13(1)        ------>ZmHOX2a(1)          <------ xxx>smallRNA(se3) <-----------GT1      <------------CBF           <---------------AGL15      <------ xxxxxxxxxxxxxx>smallRNA(i2)           <<<<<<<<<RAP2.2---------->DOF2   <------------CBF      ------- ----->ZAT14 ------------>CBF         <---------TOE2(3)           --------->TOE2(3)      ------------   tcactgaattatagcttcaattcacattgcactgaatttttagattgatctcaaaataaagtttttttcctaaatattgtcatttattgaatacaattaa  1870300                                                                              --------->AHL20(2)  ----------->GT1                                                       --------->ARR11(3) --------AHL20(2)                                                       <---------ARR11(3) -------AHL20(2)                                                       --------->YAB1 ------>AHL20(2)         <---------ANAC58               ------>ZmHOX2a(1)     ----------->TBP -->AHL20(1)             <---------ANAC58           <---------ALFIN1  <---------TOE2(3) ---AHL20(1)         <----------DOF2       --------->AtMYB61          <---------YAB1 ----------->GT1 ---AHL20(2)        <---------ANAC58       <---------ALFIN1           <---------TOE1(3)   --------->ICU4 -->AHL20(2)        <---------ANAC58    --------->AtMYB61 <----------DOF2 --------->AHL20(2) >CBF     --------->ATHB12<----------DOF2 --------->MYB46(3) --------->YAB1   <---------AHL20(2)    -   ttaaatgtaaattgattaagttgctttgctttgtatataagaccaccatcgctccctcctctttcatcagttaagataatataaattcagtaattaagag  1870400                          <---------TOE1(3)                          <---------TOE2(3)                         ---------->DOF2                         <---------DOF5.7(2)          <<<<<<<<<<<<<<<<<LFY                      <-------GAMYB               <---------YAB1        <---------ZAT6                     <---------MYB46(3)        ------>ZmHOX2a(1)  --------->ATHB12                     <------MYB46(1)          --------->TOE2(3) <-------GAMYB                     <------MYB83       <-----------GT1        <---------MYB46(3)         <---------YAB1 ---------->GT1  <-----------RAV1(1)<----------DOF2--------->YAB1<---------YAB1---------->DOF2   agaagaaataaacacaaaaatgttggttaaagttttctcttttttcatccttatgataacaatggtggttattggtgttagcaaagaatattgtgatgac  1870500                                            <-----------TGA1                                            <-----------HVH21                                           --------->O2                                           --------->ANAC46                                        <-                                           --------->bZIP60(2)                                    <--                                    <---------At4g35610                                           <--                                    --------->At4g35610                                           <--                          <---------At4g35610                            --------->ATHB12         <--                          --------->At4g35610                  <---------O2     --------->YAB1    <--                   <-----------RAV1(1)    ------>ZmHOX2a(1)    --------->O2  --------->YAB1   -------               <----------DOF2      <---------ZAT2             --------->ANAC46<---------YAB1 <------               <---------DAG2       --------->ZAT2 <---------LBD16     <---------ANAC46    xxxxxxxxxx   aaacactcatgtcaaaactttttgttggagcttaagacagcttcctcgtcactctcggagattagacgtcgtgacttattgatcatcgttttgaagaatt  1870600                        <---------WOX13(1)         <------ZmHOX2a(2)        <---------ARR11(3)    ----------->HVH21        --------->ARR11(3)    --------->ALFIN1        <---------ARR14(2)  <---------ANAC46        --------->ARR14(2)<------MYB83   --------->LBD16    --------->ATHB12  --------->CCA1(2) --------->SPL7      --------->ICU4    <---------ARR14(2) <---------LBD16     <---------YAB1    --------->ARR14(2) --------SPL7xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------ANAC46     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -------ANAC55(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  --------->ANAC58 -------ANAC58  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    --------->ANAC58 -------ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                 --------->ATHB12      --------->ZAT18 -->GLK1(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                      --------->YAB1       <------ZmHOX2a(1) ---GLK1(1)<---------DDF1 <------MYB46(1)<-------TEIL              <---------YAB1     <------ZmHOX2a(1) xxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <------ZmHOX2a(1)    <---------YAB1   ccgtgcggaagatcgacatggctatgattggtgtgatggaagatacaaaacaacatgaggagatggagaatgataagctatgtttgaaggaggacacaaa  1870700                                                      --------->GLK1(1)             --------->ARR14(2)                                             <---------ANAC46               <---------CCA1(2)                                           <---------ZAT14           <---------ARR14(2)                                           --------->ZAT14           --------->GLK1(1)    --------->ANAC58                                       ====================HOX2a_HOX2a     <---------MYB52(1)                                       =================================HOX2a_HOX2a <---------ARR11(3)                                       ==============================HOX2a_HOX2a    --------->ARR11(3)                                     --------->ARR14(2)              <---------GLK1(1)------>ZmHOX2a(2)                                 =============HOX2a_HOX2a        ============================HOX2a_HOX2a                                 <------ZmHOX2a(1)    <---------GLK1(1)   <---------DAG2  --------->ANAC58                       <xxxxxxxxxxxxxxxxsmallRNA(s) <------ZmHOX2a(1)--------->ARR14(2)--------->TOE1(2)                      <------NtERF2  <---------ARR14(2)          <------ZmHOX2a(1)  <---------AGP1                   --------->ATERF1(1) ------>ZmHOX2a(2)      ===============================HOX2a_HOX2a           --------->ICU4     --------->CCA1(2)--------->ALFIN1 ----------->GT1     <---------ARR14(2)       <------ZmHOX2a(1) ---------->DOF2  <---------MYB52(1)  <------ZmHOX2a(1)    <---------CCA1(2)<   tctatttgaggagatgatggagtcggcaaaagataggatgatccgttcagtggaggaactcttaggaggagaattcccttatcttggatcttacgaaaac  1870800                                                                                         --------->ZAT2                                                                                         --------->At4g35610                                                                                         <---------At4g35610                                                                                       <---------ALFIN1                                                                                     <---------ALFIN1                                --------->bZIP60(2)                                  ----------->RAV1(1)                                --------->REM1(1)                                 --------->ANAC58            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  --------->ANAC58    <---------O2 <---------ANAC58                                           <---------DEAR3(2)    <---------TGA1a            <-------TEIL                <---------DEAR3(1)  --------->ALFIN1    --------->O2 <---------ANAC46                          <---------bZIP60(2)<-----------HVH21    --------->TGA1a         <---------STY1(2)           ----------->HVH21   --------->MYB55(2)  <---------ALFIN1          --------->STY1(2)  --------->ANAC46------>NtERF2<---------MYB46(3)   <--- ---------ALFIN1 <---------ANAC58         ------->TEIL  ----------->TGA1 <-----------HVH21       ----   atccacacttggctcagtggcgttcttactagctacatcacatgtatcgacgaaattggtgacggtgcctataaacgtcgggtcgagccacagcttcaag  1870900  Previous    Next  AGI:  At4g03935.1    Description:  other RNA Range:  from: 1869050    to: 1874685    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g03930.1    Description:  pectinesterase. similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G27980.1); similar to pectin methylesterase, putative [Arabidopsis thaliana] (TAIR:AT1G11590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69682.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectinesterase, catalytic; (InterPro:IPR000070); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) Range:  from: 1870420    to: 1872385    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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