Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <-----------GT1                                    <---------MYB52(1)                              --------->ANAC58                              --------->ANAC58                              <---------O2                              --------->O2                              --------->TGA1a                              <---------TGA1a                              <---------ANAC55(2)                              --------->bZIP60(2)                           --------->TGA2(2)            ----------->RAV1(1)                          <-----------HVH21         --------->ANAC58                          <-----------TGA1          --------->ANAC46                         --------->bZIP60(2)        --------->ANAC58                         --------->ANAC46        <---------ARR14(2)                         --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         --------->ANAC55(2)     --------->ARR14(2)                         <---------ANAC55(2)    <----------TaMYB80               ---------->ID1 <---------REM1(1)       --------->ANAC58--------->ANAC46      ------->TEIL--------->WOX13(1) ----->RAV1(1)           <---------bZIP60(1)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -->RAV1(1)         ------>NtERF2<-------TEIL  ---------->TaMYB80--------->TOE2(3)        <---------- -ID1    <------NtERF2   --------->bZIP60(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------MYB52(1)   cagatgtagtcgtcgtttttggcgactacgtcacgtccgttttacgacgcatatacgacaacatgaacattagtagtcaattagtcgttattttacgact  1838400                                                    <---------HSFB2a(2)                                                 <---------YAB1                                              --------->AHL20(2)               --------->ARR14(2)             <---------AHL20(2)               <---------ARR14(2)             <---------AHL20(1)              <----------TaMYB80             --------->AHL20(2)             ---------->TaMYB80         <---------TOE2(3)           <------NtERF2                <---------TOE1(3)      --------->MYB52(2)      --------->MYB46(3) <---------AHL20(2)                            ------  <---------YAB1            --------->MYB52(1)--------->AHL20(1)                           --------->ANAC58 --------->AHL20(1)      --------->YAB1<-----------GT1               xxxxxxxxxxxxxxxx>smallRNA(i) -GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    --------->YAB1          ---------->ID1        --------->ANAC58   aaatatgttagtcggcatatactcgtatagtaacgactatttaacgattatattatagaagaaaaacgtttgtcgttacatagtcgcaaatggacgacaa  1838500                  --------->MYB52(2)                <---------MYB52(1)               <-------GAMYB              --------->MYB111(2)              --------->MYB55(2)           --------->ANAC58              <---------MYB46(3)           --------->ANAC58             <---------MYB55(1)         --------->TOE1(2)             <--------P<------NtERF2    --------->TOE2(2)            <-------GAMYB          <---------MYB52(2)                      <xxxxxxxxxxxxxxxxsmallRNA(s)           <---------MYB46(3)    ------>NtERF2              --------->YAB1 --------->ZAT2         <---------ZAT14   --------->ARR14(2)      --------->ARR14(2)      <---------At4g35610         <---------LBD16   <---------ARR14(2)      <---------ARR14(2)      --------->At4g35610  <----   <xxxxxxxxxxxxxxxxsmallRNA(s) --------->DEAR3(1)<---------CCA1(2)    --------->ANAC46 --------->ZAT14 ----->RAV1(1)<xxxxxxxxxxxxxxxxsmallRNA(s) --------->ANAC46 ----------->GT1<---------ZAT2     xxxxxxx   cattttccgactgcggttgttagtcgcccaatcggcgactaacatacgacacatatctgtaatcgtaaaatagtcgcaactgagtcgcagaatagtcgca  1838600                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           ------>MYB46(1)                                         <---------MYB59                                         <---------MYB111(1)                                        --------->ANAC55(1)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        --------->ANAC46                                  <------MYB46(1)     <---------REM1(1)                                 --------->MYB59   --------->MYB52(2)                                 --------------->AtSPL8                                 --------->MYB111(1)<-------GAMYB                                 <---------------AtSPL8             ----------->GT1   --------->MYB111(2)     ----------------->AGL1  <-----------RAV1(1)          <-------TEIL        <   <---------MYB46(3)--------->LBD16  --------->REM1(1)     ----------->GT1<---------AHL20(2) <xxxxxx ------DOF2        <---------LBD16<------MYB83     <---------MYB46(3)     --------->YAB1     -------- xxxxxxxxxxxxxxxx>smallRNA(fl3) <--------P ------>MYB83    <---------ZAT6<---------YAB1  <---------AHL20(2)   ttaagttgttggaaaacgttttccgcattgccaagttggtacacctaatttgtttgttgtagtcgtaaattagttataaaaattcgtctatataatcaaa  1838700                                                                                           ----------                                                                                           <xxxxxxxxx                                                                                           <------NtERF2                                                                                          xxxxxxxxxxx                                                                                          --------->LBD16                                       --------->YAB1                                    <---------ANAC46     <---------ALFIN1                 <---------ATHB12                                   <---------ANAC58  --------->ANAC46         --------->YAB1---------->DOF2                                 <---------ANAC58  --------->ANAC58        <---------ATHB12 ----------->GT1                               *TSS  --------->ANAC58  --------->ANAC58  <<<<<<<<<ARR2                                     <---------LBD16 -----------GT1     --------->ANAC58--------->WOX13(1)          --------->YAB1        xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->MYB46(3)      ------------>CBF         --------->YAB1 ->YAB1      <----------DOF2      ------------>CBF  ---------->DOF2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   attcacgacactcttctttcgcaaacaaatcaaaacaacaatcaaaagaaaaaaaaaagaaaacaatagaaatttagtttattctataatggcgggaaac  1838800                    <---------ARR14(2)                  <---------DEAR3(2)                 <---------DEAR3(1)                 <---------ANAC46               ------------>AtMYB77              --------->ALFIN1            <---------MYB46(3)            --------->MYB52(2)           --------->ALFIN1          <------NtERF2          <-------GAMYB                                                                    <------ZmHOX2a(1)         <---------MYB46(3)                                   <---------LBD16            <---------TOE1(2)        <---------ANAC46                                     <---------ANAC46       <-----------HVH21   <---------ICU4<---------RAP2.6(2)                         <---------O2          <---------ANAC55(2)   --------->YAB1<---------ANAC58                          --------->MYB52(1)      --------->ANAC46   --------->ATHB51<-------GAMYB                          ----------->HVH21     <---------ARR14(2)  --------->ICU4 <---------ANAC58                         ----------->TGA1     xxxxxxxxxxxxxxxxxxxxxx  <---------ATHB51<---------MYB46(3)             <-------TEIL<---------bZIP60(2)--------->ARR14(2) ->GT1  <---------RAP2.6(2)                     --------->GLK1(2)            --------->RAP2.6(2) xxxxxxxxxxxxxxsmallRNA(se3)                    --------->ARR14(1)         --------->At4g35610     <- xxxxxxxxxxxx>smallRNA(le3)                     --------->CCA1(2)          <---------At4g35610   <--- xxxxxxxx>smallRNA(fl3)                        --------->ARR11(1)      <-----------HVH21<-----------RAV1(2)   tacaattatggcggtagtggcggtttctatcgagattggatgtacaagagattcgatgaagtgacggggaatttgtcagccgaatacgtcgcaggagttg  1838900                                                       --------->AHL20(1)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------AHL20(2)    --------->YAB1                                     --------->AHL20(2)       --------->YAB1 --------->GLK1(1)                              --------->At5g28300   <---------ZAT6 <---------GLK1(1)                --------->ZAT14      <---------YAB1 <---------ANAC46 x>smallRNA(se3)                  <---------ZAT14     --------->AHL20(2)       --------->ICU4      <- -----ZmHOX2a(1)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------ANAC46       --------->ANAC46 ------TOE2(3)           <---------At4g35610   ----------->GT1  ------>ZmHOX2a(1) ----------->GT1  <-   aggaattcatgacattcgctaatagtcagcctatagtacagagttgtcgaggtaaattttattgtccttgtagtgtatgcaagaatgaaaaacacatcat  1839000                                                           <---------ANAC46                                                           <------MYB83                                                           <------MYB46(1)                                                          --------->MYB46(2)                                                          --------->MYB59                                                --------->ICU4                                    ------->TEIL<---------YAB1         <---------ZAT6          <---------ANAC55(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       -   <--------P                    --------->ANAC55(2)  <---------YAB1                      --------->GLK1(1) --------ANAC46                  --------->ANAC58  <---------YAB1         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------LBD16                   --------->ANAC58<---------ICU4    <---------AtLEC2       <---------GLK1(1)   ctcgggtagaagagttagtagtcatttgtttagtcacgaatttatgcctgattattatgtttggtataagcatggagaagaattgaatatggatatcgga  1839100                                                                         --------->ARR14(2)                                                                --------------->AGL15                                                               <-----------------AGL2                                                               ----------------->AGL3                                                               ----------------->AGL2                                                               <-----------------AGL3                                                             --------->ARR11(3)                                                             <---------ARR11(3)             <--------                                                             --------->ARR14(2)          ------->TEIL                   ------->TEIL                        <---------HSFB2a(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                <---------ANAC55(2)                    --------->HSFB2a(2)--------->CCA1(2) ---------              <------ZmHOX2a(1)              <------MYB46(1) <---------ARR14(2)  <---------DOF5.7(2)          --------->ARR14(2)                 <------MYB83<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---          <---------ARR14(2)     <---------ICU4      <---------REM1(1)   <---------ARR14(2)--------->AHL20(2)       --------->ANAC58          --------->YAB1   --------->ICU4<---------------AGL15  <-------TEIL       --------->ANAC46        --------->GLK1(2)  <-----------RAV1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->ANAC58   <---------ZAT6    --------->MYB46(2)<------ZmHOX2a(2) <---------WRKY38(1) <      <---------LBD16 <---------AHL20(2)    --------->MYB59 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  ----- ---------->GT1 --------->ANAC55(2)         --------->MYB111(1)<-------TEILxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   actagttacacggataggacgtattttagtgagaatcatgaagaagtaggtaatgttgtagaagatccatatgtggatatggtgaacgatgcatttaatt  1839200      <---------ANAC46                               --------->MYB111(1)      <---------ANAC58          --------->YAB1       <---------MYB46(3)              --------->MYB46(3)      <---------ANAC58       --------->YAB1         <--------P                    <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->ALFIN1  --------->ALFIN1            <---------YAB1                 <---------ANAC55(2) <---------ANAC46  <---------ANAC58            <---------ICU4                <---------ARR14(2) <---------O2 --------->YAB1 <---------ICU4   --------->ICU4                 --------->ARR14(2) <---------ANAC58  <---------ANAC58         <---------ICU4                   <---------MYB52(1) <---------ANAC58  <---------bZIP60(2)      --------->YAB1     --------->GLK1(2)--------->ANAC55(2) -AHL20(2)   <---------YAB1 --------->ICU4 <---------YAB1  <xxxxxxxxxxxxxxxxsmallRNA(i) --------->AtLEC2 >AHL20(2) --------->YAB1   <---------YAB1 --------->ICU4  --------->YAB1   <---------DEAR3(2) ------AHL20(2)    <---------O2<---------YAB1 <---------YAB1  <---------GLK1(2)<xxxxxxxxxxxxxxxxsmallRNA(s) ---------TOE2(3)  <---------ANAC46      --------->YAB1   <---------YAB1--------->ARR14(2) ---->YAB1<---------YAB1<---------PCF2  <---------YAB1 --------->ICU4   <---------ARR14(2)   ttaacgtggggtatgatgataacgtgggtcatgatgataactatcatcatgatggtagttatcagaatgtggaagagccggtccgtaaccattcaaataa  1839300  Previous    Next  AGI:  At4g03900.1    Description:  transposable element gene. CACTA-like transposase family (Tnp2/En/Spm), has a 3.9e-150 P-value blast match to GB:CAA40555 TNP2 (CACTA-element) (Antirrhinum majus) Range:  from: 1838789    to: 1842692    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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