Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <---------ARR14(2)                                                <------NtERF2                                              <---------DEAR3(1)                                            <---------bZIP60(2)                                            <---------ATERF1(1)                                          ------>NtERF2                                         ----------->HVH21                                        <------NtERF2                                        --------->ATERF1(1)                                      xxxxxxxxxxxxxxxx>smallRNA(i)  <-----------ARR10                                      <---------ANAC58       --------->DEAR3(2)                                      --------->ALFIN1      --------->ARR14(2)                                      <---------ANAC46     ============================HOX2a_HOX2a                               ----------->RAV1(2)         <------ZmHOX2a(1)                               <---------At4g35610 <---------DEAR3(1)                               --------->At4g35610 ---------->CDC5<---------MYB46(3)                             ------>ZmHOX2a(2)xxxxxxxxxxxxxxxx>smallRNA(s)                           <---------ARR14(2)--------->ATERF1(1) <---------ANAC46                           --------->ARR14(2)<---------LBD16<---------ARR14(2)                 ------                         xxxxxxxxxxxxxxxx>smallRNA(s)<---------LBD16--------->ARR14(2)         xxxxxx                        <------MYB46(1)<---------ATERF1(1)----------->HVH21              --------->ARR14(2)                        <------MYB83 <---------LBD16 <------NtERF2------>NtERF2          <---------ARR14(2)                      <--------P   xxxxxxxxxxxxxxxx>smallRNA(s)  <---------DEAR3(1)  ------>NtERF2                     --------->REM1(2)<---------ANAC58  <------NtERF2 <xxxxxxxxxxxxxxxxsmallRNA(s)                  <---------ANAC46 xxxxxxxxxxxxxxxx>smallRNA(i) <---------LBD16<---------At4g35610                 <---------LBD16 xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i)--------->GLK1(2)               <---------SPL7=====================================HOX2a_HOX2a  --------->At4g35610 xx               <-----------HVH21<----------CDC5 <---------ZAT2  <---------MYB52(1)   --------->LBD16           <xxxxxxxxxxxxxxxxsmallRNA(i)--------->LBD16<---------DEAR3(1)      --------->ARR14(2)<----    --------->ANAC46 <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ARR14(2) <---------ARR14(2)  <---------GLK1(2)  ==================================HOX2a_HOX2a --------->ZAT2<---------DEAR3(1)  --------->At4g35610  ------>ZmHOX2a(1)--------->LBD16xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---- ---TEIL   xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i)<------NtERF2------>ZmHOX2a(2)  xx -MYC3--------->ANAC46--------->ALFIN1<---------DEAR3(1)--------->ATERF1(1)   <---------ARR14(2)<---- >MYC3xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ATERF1(1)xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxxxx   catcctacacaagactcggtccgggtagggatcggctgaggcggggacgcggctcggcggaggaccggcgggtcttaactgatctgccgagaatcggccg  1804300                                                <---------ZAT6                                                <---------ANAC46                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        ------>ZmHOX2a(2)                                        xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                      --------->ARR14(2)                                      <---------ARR14(2)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxx>smallRNA(i)           ------>ZmHOX2a(2)       --------->ANAC58           xxxxxxxxxxxxxxxx>smallRNA(i)<------ZmHOX2a(2)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         --------->ARR11(3)        --------->ANAC46                       ------->TEIL    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------YAB1 --->RAP2.6(2)   <---------ALFIN1  --------->ANAC58                  <---------ANAC46 xxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->LBD16                    <---------ANAC58 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------LBD16                    <---------AtLEC2      --------->AHL20(2) --NtERF2<---------ARR11(3)      <---------ALFIN1                    <---------ANAC58    <---------ANAC55(2) -----SPL7<------ZmHOX2a(2)     <---------REM1(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -----RAP2.6(3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s)      <---------ANAC46xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   gactgatgtgcgatcttcccctctctgaattctctccacggatccgagtagtgtatggcatatagagcattgcatggacttgcatatgattaagtaaatg  1804400                                                                                           <---------MYB46(3)                                                                                           <------MYB83                                                                                           <------MYB46(1)                                                                                          <---------DEAR3(1)                                                                                          <---------AtMYB61                                                                                          --------->ALFIN1                                                                                        <---------ANAC58                                                                                        <---------ANAC58                                                       <---------ANAC58                --------->MYB55(2)                                                       <---------ANAC46                <---------MYB46(3)                                        --------->TOE1(2)                           --------->ATHB12                                 --------->YAB1        <---------ANAC58            <xxxxxxxxxxxxxxxxx                         =====================HOX2a_HOX2a                          ----------->HVH21     <---------ICU4      <------ZmHOX2a(1)      <------ZmHOX2a(1)                  --------->ICU4   <---------ANAC55(2)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <------NtERF2   --------->LBD16   <---------ANAC58   <---------LBD16  ------>ZmHOX2a(2)      ------>NtERF2   <---------LBD16   <---------ANAC58<----------DOF2     ================HOX2a_HOX2a           <---------LBD16 <-------   agattacttatggctctatgactttcaggaacgaatggtgatcgtgggaaggacttggcttaggcgcgagagactcaagaccgggatgatgggtggtgat  1804500                                      <---------ANAC58                                    --------->ARR14(2)                                      <---------ANAC46                 ------>ZmHOX2a(1)  <---------ARR14(2)                                <---------YAB1                         <----------DOF2    --------->GLK1(2)                            <---------ANAC58                       --------->ARR14(2) --------->DAG2    --------->ARR14(2)      <---------ANAC58                       <---------ARR14(2)---------->DOF2    <---------ARR14(2)      <---------ANAC46           <---------TOE2(2)   <---------ANAC58 xxxxsmallRNA(fl3)   --------->AHL20(2)            xxxxxxxxxxxxxxxx>smallRNA(i) <---------ATHB12 --YAB1          ------>ZmHOX2a(2)    <---------ANAC58 <---------TOE1(2)   <---------ANAC58    <-----   agttcggatagtctagggatcgattatatgacttgtaatagcttatatgcaaactcataggttgtatcgaatcctttgcttaatcaataaagtatccgat  1804600                                                                                           <xxxxxxxxx                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------------>MYB.PH3(1)                                 --------->ANAC58                          --------->MYB52(1) <xxxxxx                                 --------->ANAC55(1)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 --------->ANAC55(2)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 <---------ANAC55(2)                 --------->TOE2(3)    <----------                                 --------->ANAC46                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 --------->ANAC58                  ------->TEIL xxxxxxxxxxxxxxxx>smallRNA(s)                                <---------LBD16                   <---------GLK1(2)     <------NtERF2                               --------->MYB52(1)                 --------->ARR14(2) <xxxxxxxxxxxxxxx       --------->ZAT6 <---------AHL20(1)                      ---------->DOF2   <---------MYB52(1)     <-----------GT1  --------->ARR11(3)      --------->MYB52(1)----------->ARR10 xxxxxxxxxxxxxxxxxxx ----MYB52(1)        <---------CCA1(2) --------->YAB1        <------ZmHOX2a(1) <-----------HVH21   tgtttgtttactctattcgtctcatatattgaatcacggaatcatatggaacggattagactaggaaagaacctcataaacggttagggccgagtcactt  1804700                                                                                  --------->At4g35610                                                                              --------->LBD16                                                                         --------->At4g35610                                            ================================HOX2a_HOX2a                                            *TSS------>NtERF2            <---------At4g35610                                            ------>ZmHOX2a(2)            --------->ZAT2             xxxxxxxxxxxxxxxx>smallRNA(s)  <------ZmHOX2a(2)          <---------At4g35610  <---------ANAC46               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ZAT2  <---------ANAC58      --------->LBD16    =================================HOX2a_HOX2a  <---------ANAC58     --------->HSFB2a(2)--------->ARR14(2)     --------->ARR11(3) xxxxxxxsmallRNA(s)    <---------HSFB2a(2)<---------ARR14(2)     <---------ARR11(3) xxxxxxxxxxsmallRNA(s)<---------LBD16   --------->LBD16        xxxxxxxxxxxxxxxx>smallRNA(s) -HVH21  --------->ETT(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<-----------RAV1(1) xxxxxsmallRNA(fl3)   --------->SPL7  <---------LBD16         xxxxxxxxxxxxxxxx>smallRNA(s)         -- xxxx>smallRNA(se3) <---------SPL7  <---------SPL7 <----------DOF2   ------>ZmHOX2a(1)       <xxxxxxx   agtggcttgggtcgagagaactcgtccggaatttaggcagtccggatcggggcctttcaaaaaccaaggtcctgctgctcccgatgctgaaatgaaacaa  1804800           --------->At4g35610        --------->ZAT2                                                    --------->At4g35610        <---------ZAT2                                             ----------->RAV1(1)         ------        --------->At4g35610                                      --------->ZAT18          --------->YAB1        <---------At4g35610                               --------->TOE2(3)            <----------DOF2      --------->MYB46(3)                                 <---------ANAC46 --------->ZAT2xxxxxxxxxxxxx    ----------->RAV1(1)--------->ANAC58                  --------->At4g35610         --------->At4g35610   --------->REM1(1)   --------->ANAC58                  <---------ANAC55(2)         <---------At4g35610 --------->GT1    <----------ID1                         ======================RAV<---------At4g35610 xxxxxxxxxxxxxsmallRNA(fl3)     --------->ZAT6           ----------->RAV1(2)      <---------ZAT14  <x   atggtacaacagctgctacagggacaagcatctagctctacagaaattgctaagaagttacctgaattgcaccataagctggactgcagctttaatgacc  1804900                                                                                         xxxxxxxxxxxx                                                           -------->P                   ------>ZmHOX2a(1)                                                           ------->TEIL---------->DOF2 --------->TOE1(2)                                                   --------->YAB1--------->ZAT14       <---------LBD16                                                --------->WOX13(1) ------->TEIL       ----------->RAV1(2)         --------->ALFIN1         <---------GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->LBD16     ---------->DOF2              <---------ARR14(2)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --->At4g35610<------NtERF2       --------->ARR14(2)    --------->At4g35610 <-----------GT1 xxx>smallRNA(i)          ---------->DOF2    <------ZmHOX2a(1)   <---------ZAT14 <------ZmHOX2a(1) xxxxxxxxxxxxxxxsmallRNA(i)      <---------At4g35610 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------   tgaatgccaaagtggaggcattgaataccaaagtcagatacttggaaggacaatcagcatctacctctgcacctaaagttacaggacttcctgggaagtc  1805000                              --------->ANAC58                              --------->ANAC46                              --------->ANAC55(1)                  --------->ANAC58                  --------->ANAC58                  --------->ANAC55(2)                  <---------ANAC55(2)                  --------->ANAC46                              -------->P                 <---------ZAT18        --------->ARR14(2)  ------>NtERF2                 --------->ZAT18 --------->WOX13(1)        >>>>>>>>>AtERF-4               <---------SPL7 --------->ANAC58           <---------ZAT2             <---------------AtSPL8 --------->YAB1       --------->ZAT2             <---------------AtSPL3<---------ATHB12      <---------At4g35610     --------->GLK1(2)<---------At4g35610                --------->At4g35610     --------->ARR14(2)       --------->ANAC55(2)   ------>ZmHOX2a(2)                 --------->ATHB12    <---------GLK1(2)--------->MYB52(1) <---------ARR14(2) >>>>>>>>>AtERF-3       <---------AHL20(2) xxxxxxxxxxx>smallRNA(le3)    <---------ANAC55(2) <---------ARR14(2)             --------->AHL20(2) --->GT1 ---------->DOF2 --------->At4g35610     <------ZmHOX2a(1)           <---------YAB1----------   aatacagaatccaaaggagtacgcaactgctcacgcaatcactatctgctaggatcgagagctgccaactcgacttgttctgatttaatcactgggacag  1805100                                                                                            ---------                                                                                           <---------LBD16                                                                                     <<<<<<<<<GATA-2                --------->HSFB2a(1)                                                  <<<<<<<<<GATA-3                --------->HSFC1(2)                                                   <<<<<<<<<GATA-4                <---------HSFB2a(1)                                   --------->ANAC46   <---------ZAT2                <---------HSFC1(2)                     --------->YAB1 --------->ANAC58   --------->ZAT2               --------->ANAC58                       --------->MYB46(3)             <<<<<<<<<GATA-1               --------->ANAC58           <---------MYB46(3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <---------SPL7              <-------GAMYB <---------ATHB12--------->ANAC58 <---------ALFIN1 ->HVH21--------->ALFIN1               <-----------RAV1(1)  <---------YAB1     <xxxxxxxxxxxxxxxxxxxxx   tgatgttcaagagggggacgcttctactcagattgaagtctctgttgttgaattcaaccattatgctggttctcgccatctcattcaatccacctcggaa  1805200  Previous    Next  AGI:  At4g03850.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.8e-131 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 1804744    to: 1806298    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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