Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                --------->YAB1                                             <---------YAB1                       --------->HSFB2a(2)                                           <---------CCA1(2)                      <---------HSFB2a(2)                                         --------->YAB1                           ------>ZmHOX2a(1)                                        <------ZmHOX2a(2)                         --------->LBD16                                    --------->HSFB2a(2)                          <---------LBD16             ==================================HOX2a_HOX2a         <---------ALFIN1        --------->ARR14(2)             <------ZmHOX2a(1)      <---------HSFB2a(2)          <---------------AGL15     <---------ARR14(2) -----ZmHOX2a(1)                 <-----------GT1<---------YAB1  <-----------GT1<---------YAB1      --   aggattacatttgtaggatgaaatgttttgaaatttttctcgatcatatcataatcggaaacattttctccacatagaattatcctggaagtgaatccga  1769500          <---------AHL20(1)          <---------AHL20(2)                               <---------YAB1          --------->AHL20(1)                  <---------ARR11(3)         --------->AHL20(2)        --------->LBD16       --------->YAB1         <---------AHL20(2)        ------>ZmHOX2a(1)  --------->WOX13(1)         --------->YAB1 <----------DOF2       --------->ARR11(3)   <----------DOF2          <-------- -------->DOF2          <---------DAG2        XXXXXXXXXXXXXXXXXXXX>MIR783         <---------AHL20(1)   acaaagcgaaattatattcacttacacttttttaatcctgaaaccgaagatttagtcattcatgtttgacttttggtaagataacatatttttgatgatc  1769600                                 <---------ARR11(3)                                 --------->ARR11(3)                                 <---------GLK1(2)                             <---------MYB52(1)                          ------>ZmHOX2a(2)                         <------ZmHOX2a(2)                        --------->AGP1                        --------->ARR14(2)                      --------->MYB46(3)                        <---------ARR14(2)                    <-----------GT1     --------->AtLEC2 <-   ------>MYB46(1)      <---------ARR11(3)               <----------DOF2       <---------ZAT6     <--   ------>MYB83         --------->ARR11(3)       <---------AHL20(2)      <---------TOE2(3)        <-- -YAB1<----------DOF2  <---------GLK1(1)        --------->AHL20(2)       <---------TOE1(3)   <-------   aaacctatctttgagagagacctagagatctgttagattttctctcgtgatttattcatcttttaaaccatcgtgaaggtagtgatgcaaaaacatcatg  1769700      <----------DOF2                   <---------TOE1(2)     <---------DAG2                 <------ZmHOX2a(2)                 <-------TEIL                 -- ---------DOF2                     --------->ARR14(2)                --------->CCA1(2)             <- -------ANAC58               --------->ETT(2)                 <----------DOF2                <------- -------ANAC58      ----------->GT1--------->AGP1            <---------ANAC58               --------- --ICU4           ---------->DOF2  <---------ARR14(2)        <---------ANAC58      <---------AHL20(2)   gcttttgcctttttctcttctaaagtaattttcgacagatcgagggttttgagaagcccatttgcttttagatacatttttgcatataatgtccatgtca  1769800         --------->LBD16        <---------HSFB2a(2)        --------->HSFB2a(2)        <---------HSFC1(1)        --------->HSFC1(1)                                                                        ---       <---------LBD16                                                   <---------YAB1           ---   <---------ICU4        <-------GAMYB                          --------->AHL20(2)                <-- ------->AHL20(2)       ----------->GT1                         <---------AHL20(2)          <-------- --------AHL20(2)    ------------>AtMYB77                *TSS ----------->TBP------------>CBF    ---- ----HVH21        ---------->DOF2                     --------->YAB1 --------->AHL20(2)     --------- >bZIP60(2)    --------->TOE2(3)     <----------DOF2 <---------YAB1 <---------AHL20(2)     --------->AHL20(2)   tataatttttccagaaacatcaaagacagttatatcaagctttgccaagttcgacatgataactatataaataatatgatacaatttgtcaaattaaaat  1769900                                                                     --------->ANAC46                                                                     --------->ANAC58  --------->AHL20(2)                                                             <---------AHL20(1)    --------->AHL20(2)                                                             --------->AHL20(1)    <---------AHL20(2)                                                          --------->AHL20(2)       <---------AHL20(1)         ---------->DOF2                   ----------->RAV1(1)  <---------YAB1  --------->YAB1    <---------YAB1                <---------YAB1      --------->AHL20(1)       <---------AHL20(2)    ----------->TBP              <---------------AGL15--------->AHL20(2)      <---------AHL20(1)    <  --------->YAB1                 --------------->AGL15<---------AHL20(2)      --------->AHL20(1)  --- <---------YAB1                 --------->YAB1     --------->YAB1--------->YAB1<---------YAB1     --- ------>AHL20(1)               <---------YAB1 --------->TOE2(3) <---------AHL20(2) --------->AHL20(1) ------>AHL20(2)        <---------ANAC58--------->ANAC58  <---------AHL20(2)  --------->AHL20(2)  --- -------AHL20(2)    ---------->DOF2--------->YAB1--------->AHL20(2)  --------->ANAC58  <---------AHL20(2) -AHL20(2)        <---------HSFB2a(2)  --------->DAG2--------->AHL20(2)       <---------AHL20(2)  <-- ----->AHL20(2)   --------->HSFB2a(2) ---------->DOF2<---------AHL20(2)    --------->AHL20(2)    <--- >AHL20(2)--------->DAG2<---------ANAC58--------->ANAC58 <---------AHL20(2)--------->YAB1    --------   tttattataaaaaaagttttccaaaagcttgttttcataataaagcaacataaaaataatttatatattataagctataatataataaattaaaaaaaaa  1770000                                                      <------ZmHOX2a(1)                                                <---------YAB1     --------->ATERF1(1)                                             <----------DOF2       <------NtERF2                                            <---------ANAC58      --------->LBD16               -----                                            <---------ANAC58     <---------DEAR3(1)            <-----                                          ----------->ARR10      <---------ANAC46              ------      <------ZmHOX2a(1)                  <------NtERF2====================================HOX2a_HOX2a ---------YAB1            >>>>>>>>>ARR1<---------ANAC46         --------->ATERF1(1)           ------- ------>ATHB12            >>>>>>>>>ARR2<---------REM1(1)        <------NtERF2                 <------ ----->ATHB1             --------->ATHB12xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 <------ ------>YAB1            <---------YAB1 --------->ALFIN1       <---------DEAR3(1)              ------- -------ICU4        --------->YAB1     <---------ANAC58       --------->ALFIN1                ------- ------YAB1      <----------DOF2       <---------ANAC58 <------ZmHOX2a(2)                     <------ ->AHL20(2)--------->ARR14(2) <---------HSFB2a(2)   <---------TOE1(2)              ------>ZmHOX2a(2)   tcattgtaggaggtatactctttcatatgattgtagaagaggcgtagcttttcataggatcaaggaggcggagactaccatttgatccaaaatatagatc  1770100           <---------ANAC46     <---------YAB1  --------->TOE1(2)                                                                      <---------HSFB2a(2) ->ZmHOX2a(2)                         <---------TOE2(3)                             <---------YAB1 -ZmHOX2a(2)         <---------At4g35610                                           <---------AHL20(2) --->CCA1(2)     --------->ALFIN1--------->YAB1                                    --------->AHL20(2) -->AGP1  <---------LBD16<---------At5g28300      --------->AHL20(1)             <---------YAB1    -- ---ARR14(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------YAB1          ------>MYB83--------->HSFB2a(2) ---ARR11(3)  <---------AtMYB61 <---------YAB1    <---------AHL20(2)         ------>MYB46(1)      --- -->ARR14(2) <------NtERF2      --------->ICU4    --------->AHL20(2)       --------->TOE2(2)      <-- -->ARR11(3)--------->LBD16  <---------MYB52(1)  --------->AHL20(2)        --------->TOE1(2)      --- ---AGP1 ------>ZmHOX2a(2)  <-------GAMYB ----------->GT1          ----------->GT1--------->YAB1 <---   tgaacatatgatcgcggaggtagagcttaccgttatgatcaaggatgtaaattttattatacgaccaagaggcaaaacctactattataatcgagaagag  1770200                                  <---------AHL20(2)                                  --------->AHL20(2)                                --------->AHL20(2)                                             xxxxxx                                <---------AHL20(2)                                             ------                              <---------AHL20(2)     --------->AHL20(2)                      <-------                              --------->AHL20(2)     <---------AHL20(2)                      <-------                            <---------AHL20(2)   --------->ATHB12                 --------->TOE1(3)                          --------->AHL20(2)    --------->ICU4          <---------AHL20(2)   --------                          <---------AHL20(2)    <---------YAB1          --------->AHL20(2)   --------           --------->ANAC46 --------->AHL20(2)  <---------ATHB12   <---------AHL20(2)        <-------         <-----------GT1<---------AHL20(2)     <---------TOE2(3)   <---------YAB1 --------->TOE2(3)      <----------DOF2   --------->AHL20(2)    --------->YAB1       --------->AHL20(2)        <------- ------->CCA1(2)      <---------AHL20(2)     <---------AHL20(2)   --------->AHL20(2)         -------- ------>ARR14(2)      --------->AHL20(2)    <---------YAB1        <---------AHL20(1)        <-------- -------ARR14(2)    <---------AHL20(2)   --------->ICU4           --------->AHL20(1)  ---------->DOF2 ------>ARR11(3)    --------->AHL20(2)--------->AHL20(2) <---------AHL20(2)    <-----------GT1<------ZmHOX2a(2) ---ZmHOX2a(1)    --------->AHL20(2)  <---------AHL20(2) <---------ATHB51    xxxxxxxxxxxxxxxx>smallRNA(i)   gatatagtcttttactccatatatatatatatatatatatataatttttaatgatttaaattattcaatataatttaaatgttacctcaaaagcagatct  1770300                                                      <---------AHL20(2)      <---------ANAC58                     --------->ALFIN1      <---------ANAC46                   --------->ANAC55(2)      <---------ANAC58                   <---------ANAC58  <---------ANAC46                       <---------ANAC55(2)  <---------ANAC58 ------>ZmHOX2a(2)     <---------ANAC55(1)                         <---------AHL20(2)  <---------ANAC58<------ZmHOX2a(2)      <---------ANAC46                            --------->AHL20(2) xxxxxxxxxx>smallRNA(s)                  <---------ANAC58                            --------->AHL20(1) >ZmHOX2a(2)     <---------ARR14(2)    <---------DOF5.7(2)                          --------->AHL20(2) --ARR14(2)      --------->ARR14(2)    --------->MYB52(1)     <----------DOF2       --------->YAB1 --AGP1xxxxxxxxxxxxxxxx>smallRNA(s) <---------At4g35610 --------->ARR11(3)       --------->WOX13(1) ->ARR14(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->AHL20(2)        <---------ATHB12   --- ->AGP1--------->ZAT18              --------->At4g35610 <---------AHL20(1)--------->At5g28300   <---- ----ARR10     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <---------YAB1       ------->GAMYB        ------- --ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->AHL20(2)  --------->RAP2.6(3)   <------- ->ARR11(3)  <---------At4g35610 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->MYB52(1)  <---------AHL20(2) -CCA1(2)   --------->MYB52(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <-----------GT1<---------AHL20(1)   agagtcgtgcgtgctagcggatcgagagtcactcgtgcagataacgtgttgaatattatatattcttttttttaacggcaaatcaattatattatatcat  1770400  Previous    Next  AGI:  At4g03816.1    Description:  transposable element gene. copia-like retrotransposon family, has a 8.6e-22 P-value blast match to GB:BAA11674 ORF(AA 1-1338) (Ty1_Copia-element) (Nicotiana tabacum) Range:  from: 1764932    to: 1769857    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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