Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    ------>ZmHOX2a(2)      --------->ANAC58                                                --------->ARR11(3)       --------->ANAC58         xxx                                                <---------AGP1           --------->ANAC46        <---             <---------YAB1                     <---------ARR11(3)     <---------ALFIN1          <---           --------->ATHB12           <--------P--------->AGP1        <---------REM1(2)          <---          <---------YAB1            ----------->GT1                 --------->ANAC46      --------->YAB1        <---------At4g35610        <---------TOE2(3)           <---------GLK1(2) ---------->DOF2 <---   <----------DOF2                 <---------YAB1<------ZmHOX2a(2) <---------HSFB2a(2)   <---------YAB1   ggctccttttagatgattaatccacttgctcttaaatatggttagtcatagatctaatccaaacacattctcgacacgcttcataaaggctataattttg  1761600                                                    ------>ZmHOX2a(1)          <---------CCA1(2) xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                 <-----------------AGL1   <----------DOF2 ------ANAC58                         --------->ANAC46                  <-----------GT1            -- ------AtLEC2                <----------DOF2   <---------GLK1(2)    --------->LBD16               <-- ------ANAC46       ---------->DOF2   --------->ANAC58         --------->MYB46(3)                 --- ------ANAC58  <---------ANAC46       --------->ANAC58       ----------->RAV1(1)       <---------ANAC46   cgtggtttgatgaagttgcgactaaagtctccttttaagaacgccacaagattcctccaatggcaacatccgagtaactttctatcttggaggggataga  1761700                                                                                                    <                                                                                                    -                                                                                                  ---             --------->ZAT14                                                                      <--             <---------ZAT18                                                                      <--             <---------ZAT14                                                                      ---             --------->ZAT18                                                                     <---     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                      <---------------AtSPL8  <-----------GT1                                                               --------------->AtSPL8 ------->CCA1(2)                                                        ---------->DOF2   <---------AHL20(2) -------ARR11(3)                         ----------->RAV1(1)      --------->ANAC46        --------->AHL20(2) ------>ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <-----------GT1--------->CCA1(2)   <---   gatatgaccatctagttcactaccttcttgacaaaaccatgtccaacagtgtctgggctaaatgttacccgtctcaaagatgtgagtacttataaattga  1761800          --------->MYB46(3)      <------ZmHOX2a(2)      <---------ATHB12                              ---------->DOF2 ---------ARR14(2)                             --------->ANAC58 -------->ARR14(2)                             --------->ANAC58          ------>ZmHOX2a(2) ------>HSFC1(2)                               ----------->GT1       <---------YAB1 -------HSFB2a(1)                             --------->DAG2     <<<<<<<<<RAP2.2 -------HSFC1(2)                             ---------->DOF2 <----------DOF2 ------>HSFB2a(1)                        <----------ID1   --------->GLK1(2)          ----------->GT1 ------TOE2(3)      <---------ATHB12   ---------->DOF2   <---------GLK1(2)        ---------->DOF2 ------TOE1(3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->DAG2--------->CCA1(2)<---------TOE2(3)   aggttccgatcatcgacccctaatcacttacttcaatctgaaaaagaaaaagcaaaaaggaatctttagatatgatcgcagactcaaaggtaataaacaa  1761900                                                                                  <---------ICU4                                                                                  --------->ATHB51                                                                                  --------->YAB1                                                                                  -------->ATHB1                                                                                  <--------HAHB4                     <---------REM1(1)                                           <---------YAB1                ---------->DOF2                       <---------KAN4(2)          <---------ATHB12            --------->WOX13(1)        --------->At4g35610               <---------At4g35610           <---------ICU4             <---------At4g35610            --------->ZAT14          <---------YAB1            <-----------RAV1(2)              <---------ZAT14 <-----------GT1          --------->ICU4   ------->GAMYB ---------->DOF2       <-----------HVH21 --------->ICU4          <---------ATHB12--------->MYB46(3)       *TSS       <------MYB83---------->DOF2 ---------->DOF2      <---------MYB52(2)<-----------GT1 <---------REM1(1)     <------MYB46(1)    <---------ATHB51 ---   gtctcccaactaatcattcaaagttgtaaccacataatccagatgaagcggtagagaataagcttggtcactgcagaagagcaattattacccaaagacg  1762000                                                                               <---------ATHB12                                                                              ------>MYB46(1)                                                          ------>ZmHOX2a(1)   ------>MYB83                                                         ============================================                                                         <---------------AGL15<---------ARR14(2)                                           <---------YAB1--------->TOE1(3)    --------->ARR14(2)                                           ======================HOX2a_HOX2a--------->AtMYB61                                           <------ZmHOX2a(2)      --------->AHL20(2)     <---------ANAC58                                          --------->ARR11(3)    --------->ANAC58  ===================                                --------->ZAT14          --------->TOE2(3) --------->MYB46(3)                                <---------ZAT18       --------->ARR11(3)  --------->ANAC58                                <---------ZAT14       <---------ARR11(3)  --------->ANAC58      -----                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->ANAC46     ------                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ARR11(3)     <---------ANAC58 ------>ALFIN1        <----------DOF2     <---------ARR11(3)    --------->ANAC58  ------>ZmHOX2a(1)   atgggggagtagtgaccaatagctctttgcacagtatactataagatcatagcaaaaatccttaacaagaaattacaaccaatcctccatagcttgatcg  1762100                                      ------>NtERF2                                      <---------RAP2.6(3)                       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <---------------AGL15                     --------------->AGL15                     --------->HSFB2a(2)              --------->ANAC55(2)                     <---------HSFB2a(2)              --------->ANAC58                    ----------------->AGL1            <---------ANAC55(2)                    ----------------->AG         <---------ICU4                    ------>ZmHOX2a(1)      --------->WOX13(1)---------->DOF2       ------->TEIL<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) =====================================MADS_MADS --------->ICU4                    --------->TOE2(3)<- =HOX2a_HOX2a       ----------------->AGL2  --------->ZAT14               <-----------GT1      <----- ---->At4g35610     ----------------->AGL3--------------->AtSPL8        <---------ARR11(3) ---------- >ZmHOX2a(2)  <----------DOF2        <---------ETT(1) --------->ANAC58<---------MYB52(1) <-------TEIL   ctgaaaatcaatctgcctttgttccataaagagcaattgccgacaatgtactcattacgcatgaggctctccattatctccattcctcagattcaaaggt  1762200                                       ----------->HVH21                                <---------RAP2.6(2)                           <---------------AtSPL8                           <---------------AtSPL3                          <---------YAB1                        --------->CCA1(2)                       --------->ARR14(2)                       <---------ARR14(2)                 ----------->HVH21 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     ---------->DOF2       <- --------At4g35610  ----------------->AGL1                       <---------At4g35610               xx ----ARR11(3) <---------ZAT6   --------->RAP2.6(3)               --------->At4g35610               <- >DOF2        --------->ICU4   --------->SPL7          ----------->GT1 --------->ARR11(3)        ----   ctgatgctatatggtagtgatgaccgatatgagtacggcctatgacagaatagaatggggttttattagctcagttcttgaaagactcagtttccatcag  1762300                                                                                                   <-                                                                                      ------>ZmHOX2a(2)                                                                                      ===============                                                                                     <------ZmHOX2a(2)                                                                                    <---------ARR11(3)                                                                                    <---------ARR14(3)                                                                                    <---------ARR14(2)                                                                                    --------->ARR14(2)                                                                                    --------->ARR11(3)                                                                                    --------->ARR14(3)                                                                                   --------->GLK1(1)                                                                                   <---------GLK1(1)                                                                                  ----------->ARR10<-                              --------->AHL20(2)                               <------NtERF2       --              --------->MYB59 <---------AHL20(2)                             <-----------RAV1(2)   --       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              --------->ANAC46         <-   ----------->HVH21      --------------->AGL15                           --------->ANAC58         <- --------ANAC58           <---------DAG2                                  --------->ANAC58<---------CCA1(2) xxxxxxxxxxxxxx>smallRNA(i)<----------DOF2                               --------->SPL7 ------>ZmHOX2a(1) --------ANAC58<---------At4g35610                                     <---------SPL7================ ----->ARR11(3)--------->At4g35610 --------->YAB1            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <--   ttcttgtgaccatagttagctactcttaccttttaaatgatactgctcaaggctccattgtcccacaacgaggcatacggcagggagatcctctatctcc  1762400              <---------ZAT14              --------->ZAT14           ------>ZmHOX2a(1) --------ARR11(3)                                                                                   - =================HOX2a_HOX2a                                                                    ---- --------ARR11(1)                                                                                ---- ------->ARR11(3)                                   <<<<<<<<<MYB2                               <---- ------->ARR14(2)  <---------ZAT18                  <<<<<<<<<MYB1                               ----- ----------ARR10   <---------ZAT14              --------->ZAT18                                 <---- --------ARR14(2)  --------->ZAT14              <---------ZAT18                                <----- =================HOX2a_HOX2a              ---------->DOF2                      --------->ALFIN1----- -------CCA1(2)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)----------->GT1    ------->TEIL    ---------->DOF2   atatctcttcatcctctgtagtgaagtcttgtctggcctctgttacaaagcgcagttagaaaataaactcacatgaatcaaggtgggaaacaaaagtccc  1762500  Previous    Next  AGI:  At4g03813.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 3.1e-16 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 1761951    to: 1763900    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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