Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <------ZmHOX2a(1)                                              --------->LBD16                                             <---------LBD16                                             --------->HSFB2a(2)                                       --------------->AGL15                                       <---------------AGL15                <---------ARR11(3)    ----------------->AGL2                --------->ARR11(3)    ======================================================MADS_MADS            ---------->DOF2           ----------------->AGL1   <---------HSFB2a(1)  ------->GAMYB ----------------->AG   --------->HSFB2a(1) --------->MYB46(3)    <---------HSFB2a(2)            <---------------AGL15   aggaaacgttctactaaaggtctcaaccgcatgagacatttccaattccaggaatcagagaccaattcttgagaagtccaaaaattagaaacagaggcat  1651600                                                              --------->ARR14(2)                                                              --------->MYB52(1)                                                              <---------ARR14(2)                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               ------>ZmHOX2a(2)                                              =============HOX2a_HOX2a                                              <------ZmHOX2a(2)                                             --------->ARR14(3)  ------->GAMYB                                             --------->ARR11(3)  --------->ANAC46                                             --------->ARR14(2)  --------->DEAR3(1)                                             <---------ARR14(2)  --------->RAP2.6(2)                                             <---------ARR11(3) --------->MYB46(3)                                             <---------ARR14(3)<---------At5g28300                                             <---------GLK1(2)<-----------GT1                                           ----------->ARR10<---------KAN4(2)                                         ---------->DOF2   --------->YAB1                                 <---------ZAT18       ---------->DOF2    --------->ANAC58                                 <---------ZAT14    ------>ZmHOX2a(1)     --------->ANAC58               ----------->GT1   --------->ZAT14 ------>ZmHOX2a(1)     <---------ATHB12  <-------GAMYB   cccctagaccctgtagatggtgatacctatgccagtccacccataaagatcctcctccaaagaataaccgccaaacaagcttcagattgagggttgtatt  1651700                                                                  --------->TOE1(3)                                                                  --------->TOE2(3)                                                                  --------->AtMYB61                                                                ------>NtERF2                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                              ----------->HVH21                                                            --------->ANAC58                                                            <---------O2                                                            --------->ANAC58                                                            --------->ANAC46                                                            --------->O2                      xxxxxxx                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                          <---------ALFIN1                   <-------                                                       <---------WRKY18(1)                  ---------                                                      <---------ETT(2)                      ---------                                                      --------->WRKY12                      ---------                                                      --------->WRKY38(1)                   <--------                                                    <-------GAMYB <xxxxxxxxxxxxxxxxsmallRNA(s)<------NtERF2                                    <----------DOF2xxxxxxxxxxxxxxxx>smallRNA(i)            --------->RAP2.3(1)       <-----------GT1------>MYB83<---------At4g35610 --------->WRKY45         <---------YAB1------>NtERF2  --------->TOE2(3)   ------>MYB46(1)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------YAB1   ccattcttaaaaccgcatgatacctagccctccctcagcttttggtaagaagactgttgaccacgcgaccttagccttgttgtgattttcaatgccgcca  1651800                                                                                            <--------                                                                                           --------->ICU4                                                                                       --------->LBD16                                                                                      --------->ANAC55(2)                                                                                      ----------->GT1                                                                                      --------->ANAC58                                                                                      <---------ANAC55(2)                                                                                      --------->ANAC58                                                                                      --------->ANAC46         <---------ANAC55(2)                                                      --------->DEAR3(1) xxxxxxxxxxxxxxxx>smallRNA(se3)                                                 xxxxxxxxxxxxxxxxxxxxx --RAP2.6(3)                                                                    ---------->DOF2 >ATERF1(2)                                              ---------->DOF2       <---------ALFIN1   --- >RAP2.3(3)                                  <---------MYB52(1)                --------->ANAC46   --- >RAP2.6(2)                     <----------DOF2     --------->At4g35610      --------->AtMYB61  ----- -ATERF1(2)            --------->GLK1(2)------->TEIL<---------ZAT2        <-----------GT1<---------ICU4   gaccatagaaaacgtgagcatagagactctatttctttgatgcatccattagggagcttgaaagtagtaatccaaaaaaccacacagcccgtaattacca  1651900                                  <------ZmHOX2a(2)         --------->ZAT14         <---------ARR11(3)      --------->At4g35610        --------->ARR11(3)                                              ----     --------->MYB52(1)         <---------GLK1(1)                                                <---   <---------ATHB12    ---------->DOF2                                                          <----  --------->ANAC58    ------->GAMYB               --------->LBD16                           ---------  --------->ANAC58   --------->ANAC58            ----------->GT1                            <------ZmHOX2a(2) --------->WOX13(1) ------>MYB83--------->GLK1(1)<---------ANAC55(2)                       <---------ARR11(3) ---GT1 ------->GAMYB--------->ANAC58         -------->P<-----------GT1                ---------->DOF2 xx>smallRNA(se3)   ------>MYB46(1)           ------>MYB46(1)                        <---------YAB1 ------>ANAC58     --------->MYB52(1)         ------>MYB83             <---------TOE1(3)   --------->ARR11(3) ------>ANAC58    --------->AtMYB61          <---------ALFIN1<----------DOF2  <-----------GT1 ------- ----->DOF2      --------->MYB46(3)------>ZmHOX2a(2)   <---------GLK1(1)     *TSS--------->TOE2(3)---   aagcaatcaactgaagtctaccaacgaaagagagagatctcactgcccaacccgtgaatttccctttaatcttatggtttttatcttattaaagatcaat  1652000                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    <---------ZAT18                                                                 <-----------RAV1(1)                                                                <---------DEAR3(1)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                             <---------DEAR3(2)                                                             <------MYB46(1)                                                             <------MYB83                                                            <---------MYB46(3)                                                          <-------GAMYB                  --------->AHL20(2) ----->AHL20(2)                            --------->YAB1<---------DEAR3(2)           <---------AHL20(1) ------AHL20(2)                       --------->AHL20(2) <---------SPL7               --------->AHL20(1) -----ATHB12                          <---------AHL20(2) <---------MYB46(3)     ----------->GT1     < --->CBF                      ----------->TBP           <---------DREB2C(2) <---------AHL20(2)   >>>> -->WOX13(1)             --------->ZAT6 --------->YAB1  <---------At1g77200 --------->AHL20(2)------- ------>WOX13(1)--------->YAB1<---------YAB1          <-----------HVH21   <-----------TBP<---------AHL20(2)   taatcaaacctttctaaatcatatgtaagactataaatgttttaataaaaacgacttgtcggtcggtctgtgggctatataaatgtaatatataaatggt  1652100                  ----------->GT1              --------->AHL20(2)              <---------AHL20(2)                               <---------AHL20(2)              --------->AHL20(1)      --------->TOE2(3)   <---------AHL20(1)             <---------AHL20(2)     <---------YAB1        --------->AHL20(1)       <---------ANAC55(2)      --------->AHL20(1)     --------->AHL20(2)       ----------->GT1          <---------ARR11(3)     --------->YAB1 --------->AHL20(1)             --------->ARR11(3)    <---------YAB1                               -- --------->AHL20(2)           --------->AHL20(1)     --------->AHL20(2)                     <-------- <---------AHL20(2)           <---------AHL20(1)     <---------AHL20(2)                    --------->AHL20(2) <---------AHL20(1)           <---------ARR11(3)     --------->AHL20(1)               --------->ARR11(3) ---------------AGL15         --------->ARR11(3)    --------->YAB1         ----------->GT1 <---------AHL20(2) >>>>>GT-1   --------->AHL20(2) <---------AHL20(1) --------->ICU4  ----------->GT1    <---------ARR11(3) ---->GT1--------->AHL20(2)--------->AHL20(2) <---------YAB1 <---------AHL20(2)       <---------GLK1(2)   taataaaataagtaaataatttgtaaaaaaaaaatattttcattagttatgaaattataatatataaaaatgtgaaaatgtgaaaatagatttttaaatt  1652200                                                                                          -----------                                                                                       --------->ANAC58                                                                                       --------->ANAC55(1)                                                                                    --------->ARR14(2)                                            <---------AHL20(2)                    --------->ANAC58                                     <---------AHL20(2)                     --------->MYB46(3)                       ---------->DOF2      --------->AHL20(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    --------->YAB1   --------->AHL20(2)                <------ZmHOX2a(1)--------->LBD16                    --------->AHL20(2) <---------TOE2(3)            <-----------RAV1(2)--------->ANAC58                   <---------YAB1   <---------AHL20(2)             --------->At4g35610<---------LBD16                --------->AHL20(2)  --------->AHL20(2)           <------ZmHOX2a(1)--------->ANAC46              ----------->GT1    <---------AHL20(2)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->DAG2     --------->AHL20(2)            <-----------RAV1(2) --------->ANAC58  < ------->AHL20(2)  --------->ICU4--------->AHL20(2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) - -AHL20(2)  ---------->DOF2     <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ANAC46   ttaaaatactttcaaaaagtaattataaagttttttaaattaatatttaaaatgtattaatgcatcaggagcaggagaaccatcacgacccgcaacaaga  1652300                                                                     ----------->RAV1(2)                                                                    -------->P                                                                    ------>MYB46(1)                                                               -------->P                     <---------At4g35610                    --------->MYB46(3)                     --------->ZAT2                    <------ZmHOX2a(1)                     --------->At4g35610            <-----------RAV1(2)                    ----------->RAV1(1)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <-------TEIL                     <-------TEIL------>MYB83                ------->PIF5                      --------->ALFIN1  ------>MYB83                <-------PIF5                     <-------PIF5  ------>MYB46(1)               <---------bZIP60(2)               ------->PIF5<---------MYB111(1)               <---------ANAC46                 <---------bZIP60(2)------>MYB83               <---------ANAC58                 <---------ANAC58 --------->MYB46(3)            --------->ANAC46                    <---------ANAC46 ------->GAMYB        <-----------HVH21    --------->AtLEC2--------->ANAC46--------->AtMYB61  ---------->DOF2--------->ALFIN1   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->MYB46(3)   --------->DEAR3(2) >RAV1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ANAC58--------->ANAC46                   -- xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          <--- --------->DOF2<---------ANAC58    <xxxxxxxxxxxxxxxxxxsmallRNA(se3)------>MYB46(1)       <---------ARR11(3)   gcaaaagagccatcacgacgtgcagcagtccctgcaagagaaccatcacgacgtgcaggagaaccaacccaacctgcagaaggaacatcaagaccatcaa  1652400                                                          <---------ZAT2                                                          <---------At4g35610                                                   --------->At4g35610                                                   <---------At4g35610                                                   --------->ZAT2                                                   <---------ZAT2                                                   <-------GAMYB                      <xxxxxxxxxxxxxx                                                  --------->MYB52(2)           --------->ANAC46                                                  <---------MYB46(3)           --------->ANAC58                                               ------------>AtMYB77            --------->ANAC58                                      --------->ANAC46    --------->ZAT2       <---------ALFIN1  <-----------RAV1(2)                --------->At4g35610  --------->At4g35610<---------ALFIN1 ------->ANAC46           <---------ICU4    --------->ALFIN1                <---------ZAT18    ------ ------ALFIN1  ---------->DOF2       <---------At4g35610 ------>NtERF2    ------>NtERF2     ---------   cacatcaggttgaactccaaagacttcataatcgcattcagcgcaagtcgggcagttgccagctcatccattaccctgcccacaccagtcttcaacacca  1652500  Previous    Next  AGI:  At4g03726.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 1650715    to: 1651977    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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